Wall clock time and date at job start Tue Mar 31 2020 11:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47293 * 2 1 4 4 H 1.09003 * 109.47218 * 52.37769 * 3 2 1 5 5 C 1.50697 * 109.47489 * 172.37777 * 3 2 1 6 6 C 1.38238 * 119.99809 * 69.92236 * 5 3 2 7 7 C 1.38241 * 119.99717 * 179.77045 * 6 5 3 8 8 C 1.38234 * 120.00012 * 0.50082 * 7 6 5 9 9 C 1.38230 * 120.00083 * 359.75262 * 8 7 6 10 10 C 1.38234 * 120.00374 * 250.19666 * 5 3 2 11 11 N 1.46898 * 109.47160 * 292.37905 * 3 2 1 12 12 C 1.46963 * 111.00011 * 207.69834 * 11 3 2 13 13 C 1.53050 * 109.36474 * 183.16807 * 12 11 3 14 14 N 1.46962 * 109.38114 * 301.63624 * 13 12 11 15 15 C 1.46898 * 110.99900 * 183.17841 * 14 13 12 16 16 H 1.09002 * 109.47291 * 54.99634 * 15 14 13 17 17 C 1.52997 * 109.47081 * 294.99894 * 15 14 13 18 18 C 1.52999 * 109.47269 * 174.99804 * 15 14 13 19 19 C 1.50702 * 109.47130 * 295.00165 * 18 15 14 20 20 H 1.08004 * 120.00015 * 359.97438 * 19 18 15 21 21 C 1.37875 * 120.00053 * 180.02562 * 19 18 15 22 22 N 1.31513 * 120.00086 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99954 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46969 * 89.99933 * 23 21 19 25 25 H 1.48502 * 109.47319 * 209.99724 * 23 21 19 26 26 H 1.48497 * 109.47294 * 330.00031 * 23 21 19 27 27 C 1.46955 * 110.88245 * 59.30722 * 14 13 12 28 28 C 1.46947 * 111.00168 * 331.52371 * 11 3 2 29 29 H 1.09000 * 109.47156 * 172.07740 * 1 2 3 30 30 H 1.08992 * 109.47237 * 292.07808 * 1 2 3 31 31 H 1.08998 * 109.47198 * 52.07988 * 1 2 3 32 32 H 1.09002 * 109.47127 * 239.99928 * 2 1 3 33 33 H 1.09002 * 109.47597 * 120.00267 * 2 1 3 34 34 H 1.08000 * 120.00166 * 359.97438 * 6 5 3 35 35 H 1.08003 * 119.99942 * 180.23062 * 7 6 5 36 36 H 1.07998 * 119.99649 * 179.72419 * 8 7 6 37 37 H 1.08001 * 120.00013 * 179.97438 * 9 8 7 38 38 H 1.07997 * 119.99870 * 359.97438 * 10 5 3 39 39 H 1.08994 * 109.46568 * 63.21503 * 12 11 3 40 40 H 1.08999 * 109.50595 * 303.15044 * 12 11 3 41 41 H 1.08994 * 109.49165 * 181.65643 * 13 12 11 42 42 H 1.09002 * 109.48642 * 61.61215 * 13 12 11 43 43 H 1.08998 * 109.47679 * 59.99821 * 17 15 14 44 44 H 1.09001 * 109.47404 * 180.02562 * 17 15 14 45 45 H 1.09001 * 109.47369 * 300.00053 * 17 15 14 46 46 H 1.09000 * 109.47040 * 55.00026 * 18 15 14 47 47 H 1.08994 * 109.47195 * 174.99987 * 18 15 14 48 48 H 0.96999 * 120.00207 * 180.02562 * 22 21 19 49 49 H 1.09005 * 109.48557 * 60.64981 * 27 14 13 50 50 H 1.08999 * 109.49165 * 180.68647 * 27 14 13 51 51 H 1.09005 * 109.49064 * 56.84330 * 28 11 3 52 52 H 1.09000 * 109.50831 * 296.78864 * 28 11 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5696 1.9942 0.8140 5 6 3.5351 1.4467 0.1884 6 6 4.3603 0.9883 -0.8215 7 6 5.7321 0.9966 -0.6504 8 6 6.2781 1.4536 0.5345 9 6 5.4527 1.9071 1.5463 10 6 4.0812 1.9036 1.3733 11 7 1.7061 2.0799 -1.2807 12 6 2.6695 3.1403 -1.6082 13 6 2.2429 3.8304 -2.9059 14 7 2.1701 2.8363 -3.9858 15 6 1.8362 3.4737 -5.2665 16 1 2.5526 4.2684 -5.4746 17 6 0.4271 4.0648 -5.1899 18 6 1.8918 2.4312 -6.3849 19 6 3.3071 1.9381 -6.5421 20 1 4.0889 2.3294 -5.9079 21 6 3.6042 0.9881 -7.4961 22 7 2.6524 0.5118 -8.2686 23 14 5.3587 0.3773 -7.6914 24 1 5.5743 -0.7988 -6.8107 25 1 5.5925 -0.0133 -9.1049 26 1 6.3041 1.4584 -7.3137 27 6 1.2064 1.7764 -3.6580 28 6 1.6333 1.0859 -2.3605 29 1 -0.3633 -1.0179 -0.1416 30 1 -0.3633 0.3862 0.9522 31 1 -0.3633 0.6315 -0.8107 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.9335 0.6268 -1.7453 35 1 6.3770 0.6420 -1.4408 36 1 7.3496 1.4559 0.6697 37 1 5.8793 2.2637 2.4722 38 1 3.4363 2.2579 2.1638 39 1 3.6600 2.7040 -1.7370 40 1 2.6958 3.8706 -0.7995 41 1 2.9718 4.5976 -3.1665 42 1 1.2642 4.2903 -2.7684 43 1 0.3873 4.8076 -4.3931 44 1 0.1791 4.5374 -6.1403 45 1 -0.2895 3.2702 -4.9818 46 1 1.2410 1.5937 -6.1336 47 1 1.5584 2.8827 -7.3193 48 1 2.8613 -0.1568 -8.9396 49 1 0.2159 2.2127 -3.5289 50 1 1.1794 1.0464 -4.4670 51 1 0.9042 0.3186 -2.1000 52 1 2.6118 0.6259 -2.4984 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559567908.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:05 Heat of formation + Delta-G solvation = 47.403146 kcal Electronic energy + Delta-G solvation = -28329.858711 eV Core-core repulsion = 24908.546302 eV Total energy + Delta-G solvation = -3421.312409 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.58611 -38.50320 -36.78944 -33.69127 -32.38733 -31.55178 -30.89706 -30.20063 -29.83335 -27.29350 -26.67615 -24.28810 -23.63346 -23.01784 -22.55189 -21.81083 -20.58550 -19.63996 -18.45861 -16.84592 -16.39398 -16.14135 -15.41533 -15.09650 -14.90991 -14.64316 -14.47118 -14.25509 -13.99749 -13.89673 -13.49053 -13.32245 -12.98239 -12.89259 -12.60169 -12.30860 -12.04408 -11.92249 -11.72252 -11.57149 -11.43671 -11.34423 -11.25816 -11.01539 -10.95137 -10.78034 -10.66935 -10.54478 -10.40080 -10.28947 -10.11632 -9.78295 -9.11522 -8.96099 -8.91735 -8.64211 -8.25232 -8.03563 -7.38522 -5.88523 -3.86072 1.32603 1.40624 3.38022 3.44363 3.48513 3.74165 4.13023 4.55414 4.58812 4.66535 4.80296 4.95690 4.98871 5.07709 5.10132 5.29024 5.36127 5.39470 5.48373 5.55535 5.56537 5.58758 5.69137 5.76567 5.81938 5.84512 5.88958 5.90915 5.92447 6.00835 6.03225 6.04815 6.08487 6.12487 6.22957 6.29860 6.36809 6.41503 6.46903 6.53394 6.59547 6.62304 6.68207 6.76931 7.00466 7.02298 7.23424 7.29362 7.58575 7.72870 7.96094 8.06468 8.14301 8.59415 9.20132 9.75557 11.23408 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011472 B = 0.004609 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.042953 B = 6073.029029 C = 7171.434396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.123 3.877 4 H 0.086 0.914 5 C -0.105 4.105 6 C -0.110 4.110 7 C -0.118 4.118 8 C -0.124 4.124 9 C -0.125 4.125 10 C -0.115 4.115 11 N -0.522 5.522 12 C 0.052 3.948 13 C 0.054 3.946 14 N -0.510 5.510 15 C 0.087 3.913 16 H 0.068 0.932 17 C -0.183 4.183 18 C 0.029 3.971 19 C -0.488 4.488 20 H 0.060 0.940 21 C 0.051 3.949 22 N -0.903 5.903 23 Si 0.887 3.113 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.276 1.276 27 C 0.057 3.943 28 C 0.040 3.960 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.132 0.868 35 H 0.122 0.878 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.033 0.967 43 H 0.040 0.960 44 H 0.053 0.947 45 H 0.052 0.948 46 H 0.020 0.980 47 H 0.018 0.982 48 H 0.257 0.743 49 H 0.032 0.968 50 H 0.093 0.907 51 H 0.085 0.915 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.730 1.971 19.815 19.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.015 3.985 4 H 0.104 0.896 5 C -0.107 4.107 6 C -0.127 4.127 7 C -0.136 4.136 8 C -0.142 4.142 9 C -0.143 4.143 10 C -0.134 4.134 11 N -0.246 5.246 12 C -0.076 4.076 13 C -0.075 4.075 14 N -0.234 5.234 15 C -0.021 4.021 16 H 0.086 0.914 17 C -0.242 4.242 18 C -0.008 4.008 19 C -0.527 4.527 20 H 0.078 0.922 21 C -0.148 4.148 22 N -0.544 5.544 23 Si 0.716 3.284 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.201 1.201 27 C -0.071 4.071 28 C -0.087 4.087 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.150 0.850 35 H 0.140 0.860 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.051 0.949 43 H 0.060 0.940 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.038 0.962 47 H 0.036 0.964 48 H 0.066 0.934 49 H 0.050 0.950 50 H 0.111 0.889 51 H 0.103 0.897 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.772 1.857 19.655 19.758 hybrid contribution 1.096 -0.318 -0.161 1.153 sum 0.325 1.539 19.494 19.558 Atomic orbital electron populations 1.21823 0.94945 1.01612 1.02426 1.21854 0.96727 0.95158 1.02675 1.20854 0.88859 0.95273 0.93563 0.89574 1.20572 0.96910 0.98859 0.94345 1.21412 0.93697 0.98605 0.99033 1.21201 0.95258 0.99642 0.97476 1.21126 0.99583 0.99551 0.93929 1.21070 0.93685 1.00591 0.98963 1.20988 0.95021 1.00399 0.96974 1.62639 1.48188 1.12068 1.01723 1.22376 0.95087 0.93642 0.96525 1.22137 0.99565 0.94675 0.91088 1.62283 1.48624 1.11027 1.01486 1.21890 0.92454 0.97525 0.90244 0.91396 1.22500 1.00382 1.00452 1.00823 1.19218 0.97600 0.92753 0.91211 1.21169 0.94116 1.21220 1.16198 0.92225 1.24988 0.96605 0.96981 0.96217 1.69960 1.31926 1.30392 1.22166 0.86669 0.85799 0.79048 0.76881 1.20994 1.21620 1.20061 1.22189 0.93297 0.95436 0.96197 1.22660 1.00882 0.94569 0.90615 0.93011 0.93021 0.91075 0.90850 0.91787 0.85020 0.86034 0.86455 0.86483 0.86420 0.92449 0.91528 0.91276 0.94909 0.94048 0.92743 0.92930 0.96224 0.96428 0.93352 0.95017 0.88903 0.89741 0.93407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.19 37.15 0.34 -1.16 16 2 C -0.13 -1.35 4.72 -26.74 -0.13 -1.48 16 3 C 0.12 1.43 2.63 -68.87 -0.18 1.24 16 4 H 0.09 0.95 7.90 -51.93 -0.41 0.54 16 5 C -0.11 -1.27 3.59 -104.63 -0.38 -1.65 16 6 C -0.11 -1.48 6.76 -39.58 -0.27 -1.75 16 7 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 8 C -0.12 -1.38 10.05 -39.59 -0.40 -1.78 16 9 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 10 C -0.12 -1.26 9.67 -39.58 -0.38 -1.64 16 11 N -0.52 -7.07 4.54 -227.89 -1.04 -8.11 16 12 C 0.05 0.75 4.60 -3.76 -0.02 0.73 16 13 C 0.05 0.87 5.25 -3.76 -0.02 0.85 16 14 N -0.51 -9.61 4.41 -226.49 -1.00 -10.61 16 15 C 0.09 1.77 2.30 -67.72 -0.16 1.61 16 16 H 0.07 1.43 8.11 -51.93 -0.42 1.01 16 17 C -0.18 -3.20 8.49 37.16 0.32 -2.88 16 18 C 0.03 0.73 4.27 -27.88 -0.12 0.61 16 19 C -0.49 -13.53 8.84 -34.44 -0.30 -13.83 16 20 H 0.06 1.67 7.74 -52.48 -0.41 1.26 16 21 C 0.05 1.46 5.46 -17.82 -0.10 1.37 16 22 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 23 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 C 0.06 1.01 4.82 -3.77 -0.02 0.99 16 28 C 0.04 0.60 3.83 -3.77 -0.01 0.58 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.80 6.40 -51.93 -0.33 0.47 16 32 H 0.07 0.86 5.94 -51.93 -0.31 0.55 16 33 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 34 H 0.13 1.98 4.79 -52.49 -0.25 1.73 16 35 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 36 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 37 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.12 1.06 7.97 -52.49 -0.42 0.65 16 39 H 0.06 0.91 4.91 -51.93 -0.25 0.66 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.07 1.10 8.12 -51.93 -0.42 0.67 16 42 H 0.03 0.52 6.60 -51.93 -0.34 0.18 16 43 H 0.04 0.65 6.59 -51.93 -0.34 0.31 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.05 0.92 6.46 -51.93 -0.34 0.59 16 46 H 0.02 0.52 6.11 -51.93 -0.32 0.20 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 49 H 0.03 0.55 6.46 -51.93 -0.34 0.22 16 50 H 0.09 1.90 6.07 -51.93 -0.32 1.59 16 51 H 0.08 1.14 4.56 -51.93 -0.24 0.91 16 52 H 0.05 0.78 4.86 -51.93 -0.25 0.53 16 LS Contribution 378.59 15.07 5.71 5.71 Total: -1.00 -29.25 378.59 -11.87 -41.12 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -8.64 Total: 3.00 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -2.62 Total: -21.80 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: -1.30 Total: -44.97 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.25 -11.87 -41.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559567908.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.525 kcal (2) G-P(sol) polarization free energy of solvation -29.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds