Wall clock time and date at job start Tue Mar 31 2020 11:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47293 * 2 1 4 4 H 1.09003 * 109.47218 * 52.37769 * 3 2 1 5 5 C 1.50697 * 109.47489 * 172.37777 * 3 2 1 6 6 C 1.38238 * 119.99809 * 69.92236 * 5 3 2 7 7 C 1.38241 * 119.99717 * 179.77045 * 6 5 3 8 8 C 1.38234 * 120.00012 * 0.50082 * 7 6 5 9 9 C 1.38230 * 120.00083 * 359.75262 * 8 7 6 10 10 C 1.38234 * 120.00374 * 250.19666 * 5 3 2 11 11 N 1.46898 * 109.47160 * 292.37905 * 3 2 1 12 12 C 1.46963 * 111.00011 * 207.69834 * 11 3 2 13 13 C 1.53050 * 109.36474 * 183.16807 * 12 11 3 14 14 N 1.46962 * 109.38114 * 301.63624 * 13 12 11 15 15 C 1.46898 * 110.99900 * 183.17841 * 14 13 12 16 16 H 1.09002 * 109.47291 * 54.99634 * 15 14 13 17 17 C 1.52997 * 109.47081 * 294.99894 * 15 14 13 18 18 C 1.52999 * 109.47269 * 174.99804 * 15 14 13 19 19 C 1.50702 * 109.47130 * 295.00165 * 18 15 14 20 20 H 1.08004 * 120.00015 * 359.97438 * 19 18 15 21 21 C 1.37875 * 120.00053 * 180.02562 * 19 18 15 22 22 N 1.31513 * 120.00086 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99954 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46969 * 89.99933 * 23 21 19 25 25 H 1.48502 * 109.47319 * 209.99724 * 23 21 19 26 26 H 1.48497 * 109.47294 * 330.00031 * 23 21 19 27 27 C 1.46955 * 110.88245 * 59.30722 * 14 13 12 28 28 C 1.46947 * 111.00168 * 331.52371 * 11 3 2 29 29 H 1.09000 * 109.47156 * 172.07740 * 1 2 3 30 30 H 1.08992 * 109.47237 * 292.07808 * 1 2 3 31 31 H 1.08998 * 109.47198 * 52.07988 * 1 2 3 32 32 H 1.09002 * 109.47127 * 239.99928 * 2 1 3 33 33 H 1.09002 * 109.47597 * 120.00267 * 2 1 3 34 34 H 1.08000 * 120.00166 * 359.97438 * 6 5 3 35 35 H 1.08003 * 119.99942 * 180.23062 * 7 6 5 36 36 H 1.07998 * 119.99649 * 179.72419 * 8 7 6 37 37 H 1.08001 * 120.00013 * 179.97438 * 9 8 7 38 38 H 1.07997 * 119.99870 * 359.97438 * 10 5 3 39 39 H 1.08994 * 109.46568 * 63.21503 * 12 11 3 40 40 H 1.08999 * 109.50595 * 303.15044 * 12 11 3 41 41 H 1.08994 * 109.49165 * 181.65643 * 13 12 11 42 42 H 1.09002 * 109.48642 * 61.61215 * 13 12 11 43 43 H 1.08998 * 109.47679 * 59.99821 * 17 15 14 44 44 H 1.09001 * 109.47404 * 180.02562 * 17 15 14 45 45 H 1.09001 * 109.47369 * 300.00053 * 17 15 14 46 46 H 1.09000 * 109.47040 * 55.00026 * 18 15 14 47 47 H 1.08994 * 109.47195 * 174.99987 * 18 15 14 48 48 H 0.96999 * 120.00207 * 180.02562 * 22 21 19 49 49 H 1.09005 * 109.48557 * 60.64981 * 27 14 13 50 50 H 1.08999 * 109.49165 * 180.68647 * 27 14 13 51 51 H 1.09005 * 109.49064 * 56.84330 * 28 11 3 52 52 H 1.09000 * 109.50831 * 296.78864 * 28 11 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5696 1.9942 0.8140 5 6 3.5351 1.4467 0.1884 6 6 4.3603 0.9883 -0.8215 7 6 5.7321 0.9966 -0.6504 8 6 6.2781 1.4536 0.5345 9 6 5.4527 1.9071 1.5463 10 6 4.0812 1.9036 1.3733 11 7 1.7061 2.0799 -1.2807 12 6 2.6695 3.1403 -1.6082 13 6 2.2429 3.8304 -2.9059 14 7 2.1701 2.8363 -3.9858 15 6 1.8362 3.4737 -5.2665 16 1 2.5526 4.2684 -5.4746 17 6 0.4271 4.0648 -5.1899 18 6 1.8918 2.4312 -6.3849 19 6 3.3071 1.9381 -6.5421 20 1 4.0889 2.3294 -5.9079 21 6 3.6042 0.9881 -7.4961 22 7 2.6524 0.5118 -8.2686 23 14 5.3587 0.3773 -7.6914 24 1 5.5743 -0.7988 -6.8107 25 1 5.5925 -0.0133 -9.1049 26 1 6.3041 1.4584 -7.3137 27 6 1.2064 1.7764 -3.6580 28 6 1.6333 1.0859 -2.3605 29 1 -0.3633 -1.0179 -0.1416 30 1 -0.3633 0.3862 0.9522 31 1 -0.3633 0.6315 -0.8107 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.9335 0.6268 -1.7453 35 1 6.3770 0.6420 -1.4408 36 1 7.3496 1.4559 0.6697 37 1 5.8793 2.2637 2.4722 38 1 3.4363 2.2579 2.1638 39 1 3.6600 2.7040 -1.7370 40 1 2.6958 3.8706 -0.7995 41 1 2.9718 4.5976 -3.1665 42 1 1.2642 4.2903 -2.7684 43 1 0.3873 4.8076 -4.3931 44 1 0.1791 4.5374 -6.1403 45 1 -0.2895 3.2702 -4.9818 46 1 1.2410 1.5937 -6.1336 47 1 1.5584 2.8827 -7.3193 48 1 2.8613 -0.1568 -8.9396 49 1 0.2159 2.2127 -3.5289 50 1 1.1794 1.0464 -4.4670 51 1 0.9042 0.3186 -2.1000 52 1 2.6118 0.6259 -2.4984 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559567908.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:04 Heat of formation + Delta-G solvation = 31.081899 kcal Electronic energy + Delta-G solvation = -28330.566453 eV Core-core repulsion = 24908.546302 eV Total energy + Delta-G solvation = -3422.020151 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.64063 -39.72599 -37.97991 -35.27872 -34.09237 -32.62931 -31.86655 -31.48640 -31.06992 -29.18392 -27.78097 -25.58637 -25.00651 -24.64111 -23.57104 -22.73775 -21.83465 -20.88965 -19.83810 -18.35070 -17.87347 -17.49058 -16.58017 -16.32855 -16.20543 -16.05164 -15.80729 -15.52562 -15.29033 -15.05789 -14.60043 -14.50667 -14.29725 -14.06153 -13.86272 -13.68153 -13.48464 -13.22131 -13.09528 -12.84512 -12.71987 -12.62712 -12.56966 -12.42495 -12.38533 -12.20399 -11.96876 -11.88899 -11.73825 -11.63564 -11.47228 -11.23516 -11.09161 -10.91311 -10.47460 -9.82377 -9.55138 -9.16502 -8.84777 -8.10436 -6.14661 0.44074 0.51178 1.39268 1.39324 1.50450 2.45616 2.81978 3.06417 3.13439 3.27844 3.72420 3.86224 4.00675 4.05547 4.10718 4.17748 4.23381 4.27629 4.36272 4.41718 4.45168 4.50015 4.51981 4.54509 4.62346 4.64885 4.68786 4.70995 4.82430 4.93078 4.93539 4.98082 5.03529 5.10064 5.11785 5.14380 5.18308 5.20442 5.23454 5.30885 5.34256 5.49841 5.52541 5.59598 5.65563 5.69672 5.71862 5.90270 6.10347 6.13759 6.16296 6.34961 6.47550 6.56129 6.98680 7.50852 9.01522 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011472 B = 0.004609 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.042953 B = 6073.029029 C = 7171.434396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.123 4.123 3 C 0.125 3.875 4 H 0.104 0.896 5 C -0.110 4.110 6 C -0.127 4.127 7 C -0.138 4.138 8 C -0.127 4.127 9 C -0.123 4.123 10 C -0.115 4.115 11 N -0.517 5.517 12 C 0.058 3.942 13 C 0.057 3.943 14 N -0.528 5.528 15 C 0.094 3.906 16 H 0.061 0.939 17 C -0.171 4.171 18 C 0.037 3.963 19 C -0.496 4.496 20 H 0.054 0.946 21 C -0.001 4.001 22 N -0.938 5.938 23 Si 0.951 3.049 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.268 1.268 27 C 0.064 3.936 28 C 0.052 3.948 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.137 0.863 37 H 0.146 0.854 38 H 0.143 0.857 39 H 0.043 0.957 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.041 0.959 43 H 0.064 0.936 44 H 0.055 0.945 45 H 0.049 0.951 46 H -0.001 1.001 47 H -0.010 1.010 48 H 0.258 0.742 49 H 0.038 0.962 50 H 0.055 0.945 51 H 0.098 0.902 52 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.209 2.848 22.964 23.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C 0.017 3.983 4 H 0.122 0.878 5 C -0.111 4.111 6 C -0.145 4.145 7 C -0.156 4.156 8 C -0.145 4.145 9 C -0.141 4.141 10 C -0.133 4.133 11 N -0.241 5.241 12 C -0.070 4.070 13 C -0.071 4.071 14 N -0.253 5.253 15 C -0.014 4.014 16 H 0.079 0.921 17 C -0.229 4.229 18 C 0.000 4.000 19 C -0.535 4.535 20 H 0.072 0.928 21 C -0.197 4.197 22 N -0.580 5.580 23 Si 0.777 3.223 24 H -0.205 1.205 25 H -0.211 1.211 26 H -0.193 1.193 27 C -0.065 4.065 28 C -0.076 4.076 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.125 0.875 35 H 0.134 0.866 36 H 0.155 0.845 37 H 0.164 0.836 38 H 0.161 0.839 39 H 0.061 0.939 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.059 0.941 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.018 0.982 47 H 0.009 0.991 48 H 0.067 0.933 49 H 0.056 0.944 50 H 0.074 0.926 51 H 0.116 0.884 52 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -0.248 2.742 22.820 22.986 hybrid contribution 0.949 -0.595 -1.103 1.572 sum 0.701 2.147 21.717 21.834 Atomic orbital electron populations 1.21776 0.94161 1.01795 1.02608 1.21818 0.97288 0.94590 1.02389 1.20944 0.88920 0.95785 0.92606 0.87809 1.20589 0.96817 0.99128 0.94588 1.21286 0.94350 1.00072 0.98837 1.21304 0.95093 1.00742 0.98458 1.21387 1.00866 0.98892 0.93344 1.21439 0.93559 0.99407 0.99646 1.21297 0.95701 0.99470 0.96842 1.62650 1.47897 1.11577 1.01953 1.22300 0.94460 0.94043 0.96166 1.22173 1.00045 0.94136 0.90753 1.62181 1.49241 1.12089 1.01740 1.21598 0.94260 0.95781 0.89759 0.92064 1.22345 0.98087 1.00684 1.01822 1.19056 0.95849 0.93222 0.91880 1.21434 0.95127 1.21095 1.15799 0.92809 1.25775 1.00609 0.97286 0.96035 1.70083 1.33976 1.31083 1.22871 0.85657 0.81045 0.78623 0.76942 1.20479 1.21095 1.19280 1.22047 0.93560 0.94495 0.96352 1.22503 1.00278 0.94800 0.90004 0.92450 0.91583 0.92492 0.92580 0.90666 0.87536 0.86606 0.84543 0.83624 0.83919 0.93892 0.89627 0.91113 0.94118 0.91675 0.92586 0.93213 0.98234 0.99129 0.93288 0.94429 0.92647 0.88379 0.95115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.19 71.98 0.66 -1.96 16 2 C -0.12 -2.45 4.72 30.59 0.14 -2.31 16 3 C 0.13 2.65 2.63 44.17 0.12 2.76 16 4 H 0.10 1.90 7.90 -2.39 -0.02 1.88 16 5 C -0.11 -2.47 3.59 -19.87 -0.07 -2.54 16 6 C -0.13 -3.46 6.76 22.27 0.15 -3.30 16 7 C -0.14 -3.51 10.05 22.27 0.22 -3.28 16 8 C -0.13 -2.59 10.05 22.27 0.22 -2.37 16 9 C -0.12 -2.17 10.05 22.27 0.22 -1.95 16 10 C -0.11 -2.12 9.67 22.27 0.22 -1.91 16 11 N -0.52 -13.36 4.54 -874.90 -3.98 -17.34 16 12 C 0.06 1.61 4.60 86.31 0.40 2.01 16 13 C 0.06 1.77 5.25 86.31 0.45 2.23 16 14 N -0.53 -20.23 4.41 -870.48 -3.84 -24.07 16 15 C 0.09 3.93 2.30 44.91 0.10 4.03 16 16 H 0.06 2.61 8.11 -2.39 -0.02 2.59 16 17 C -0.17 -5.91 8.49 71.98 0.61 -5.30 16 18 C 0.04 1.95 4.27 29.85 0.13 2.07 16 19 C -0.50 -28.43 8.84 25.60 0.23 -28.20 16 20 H 0.05 3.09 7.74 -2.91 -0.02 3.06 16 21 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 22 N -0.94 -57.77 13.29 21.45 0.28 -57.48 16 23 Si 0.95 46.00 29.54 68.60 2.03 48.02 16 24 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 25 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 26 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 27 C 0.06 2.33 4.82 86.31 0.42 2.74 16 28 C 0.05 1.57 3.83 86.31 0.33 1.91 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 1.19 6.40 -2.39 -0.02 1.18 16 32 H 0.06 1.31 5.94 -2.39 -0.01 1.30 16 33 H 0.07 1.34 8.13 -2.39 -0.02 1.32 16 34 H 0.11 3.40 4.79 -2.91 -0.01 3.39 16 35 H 0.12 2.92 8.06 -2.91 -0.02 2.90 16 36 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 37 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 38 H 0.14 1.92 7.97 -2.91 -0.02 1.89 16 39 H 0.04 1.35 4.91 -2.39 -0.01 1.34 16 40 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.07 2.17 8.12 -2.39 -0.02 2.15 16 42 H 0.04 1.21 6.60 -2.39 -0.02 1.20 16 43 H 0.06 1.95 6.59 -2.39 -0.02 1.93 16 44 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.05 1.74 6.46 -2.39 -0.02 1.72 16 46 H 0.00 -0.03 6.11 -2.39 -0.01 -0.05 16 47 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 48 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 49 H 0.04 1.31 6.46 -2.38 -0.02 1.30 16 50 H 0.06 2.42 6.07 -2.39 -0.01 2.41 16 51 H 0.10 2.69 4.56 -2.38 -0.01 2.68 16 52 H 0.03 1.06 4.86 -2.39 -0.01 1.05 16 Total: -1.00 -64.63 378.59 0.40 -64.23 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.89 Total: 21.60 kcal Atomic # 6 Polarization: -39.98 SS G_CDS: 5.02 Total: -34.96 kcal Atomic # 7 Polarization: -91.36 SS G_CDS: -7.53 Total: -98.89 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -64.63 0.40 -64.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559567908.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.311 kcal (2) G-P(sol) polarization free energy of solvation -64.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds