Wall clock time and date at job start Tue Mar 31 2020 11:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47118 * 2 1 4 4 H 1.09001 * 109.47393 * 307.73397 * 3 2 1 5 5 C 1.50702 * 109.47491 * 187.73412 * 3 2 1 6 6 C 1.38237 * 119.99824 * 260.89116 * 5 3 2 7 7 C 1.38238 * 119.99653 * 179.76191 * 6 5 3 8 8 C 1.38227 * 119.99987 * 0.50566 * 7 6 5 9 9 C 1.38235 * 120.00061 * 359.74157 * 8 7 6 10 10 C 1.38227 * 120.00196 * 81.15485 * 5 3 2 11 11 N 1.46906 * 109.47479 * 67.73299 * 3 2 1 12 12 C 1.46959 * 111.00068 * 269.86838 * 11 3 2 13 13 C 1.53045 * 109.36492 * 183.18442 * 12 11 3 14 14 N 1.46956 * 109.36458 * 301.60042 * 13 12 11 15 15 C 1.46905 * 110.99834 * 183.19025 * 14 13 12 16 16 H 1.09000 * 109.46876 * 189.60684 * 15 14 13 17 17 C 1.52995 * 109.47172 * 309.60301 * 15 14 13 18 18 C 1.53001 * 109.47461 * 69.60678 * 15 14 13 19 19 C 1.50699 * 109.46981 * 63.47883 * 18 15 14 20 20 H 1.08001 * 120.00422 * 4.99062 * 19 18 15 21 21 C 1.37878 * 120.00015 * 184.99051 * 19 18 15 22 22 N 1.31517 * 119.99933 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00233 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46987 * 89.99668 * 23 21 19 25 25 H 1.48500 * 109.46958 * 210.00015 * 23 21 19 26 26 H 1.48499 * 109.46648 * 330.00042 * 23 21 19 27 27 C 1.46952 * 110.88617 * 59.31922 * 14 13 12 28 28 C 1.46959 * 110.99588 * 33.66366 * 11 3 2 29 29 H 1.09000 * 109.47243 * 166.96606 * 1 2 3 30 30 H 1.09003 * 109.47476 * 286.97033 * 1 2 3 31 31 H 1.09000 * 109.47336 * 46.97496 * 1 2 3 32 32 H 1.08997 * 109.47073 * 239.99827 * 2 1 3 33 33 H 1.09005 * 109.47058 * 119.99677 * 2 1 3 34 34 H 1.08002 * 120.00117 * 359.97438 * 6 5 3 35 35 H 1.08004 * 119.99733 * 180.22211 * 7 6 5 36 36 H 1.08008 * 119.99843 * 179.72498 * 8 7 6 37 37 H 1.08002 * 119.99968 * 179.97438 * 9 8 7 38 38 H 1.08010 * 119.99822 * 0.02562 * 10 5 3 39 39 H 1.09001 * 109.48674 * 63.21725 * 12 11 3 40 40 H 1.09000 * 109.50602 * 303.16478 * 12 11 3 41 41 H 1.08996 * 109.49053 * 181.63008 * 13 12 11 42 42 H 1.09000 * 109.50983 * 61.57383 * 13 12 11 43 43 H 1.09002 * 109.47625 * 180.02562 * 17 15 14 44 44 H 1.09000 * 109.46908 * 60.00402 * 17 15 14 45 45 H 1.09001 * 109.47184 * 300.00541 * 17 15 14 46 46 H 1.08992 * 109.47063 * 183.47796 * 18 15 14 47 47 H 1.08999 * 109.46823 * 303.48580 * 18 15 14 48 48 H 0.96996 * 119.99994 * 179.97438 * 22 21 19 49 49 H 1.09000 * 109.48926 * 60.64828 * 27 14 13 50 50 H 1.08999 * 109.49111 * 180.71390 * 27 14 13 51 51 H 1.09001 * 109.49207 * 296.77975 * 28 11 3 52 52 H 1.08996 * 109.48817 * 56.84562 * 28 11 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.5681 1.9947 -0.8127 5 6 3.5348 1.4468 -0.1912 6 6 4.3709 1.5852 0.9009 7 6 5.7421 1.5843 0.7261 8 6 6.2771 1.4555 -0.5420 9 6 5.4409 1.3224 -1.6346 10 6 4.0698 1.3180 -1.4592 11 7 1.7084 2.0791 1.2817 12 6 0.3939 2.7333 1.2204 13 6 0.1214 3.4500 2.5449 14 7 0.1713 2.4767 3.6449 15 6 -0.1603 3.1133 4.9266 16 1 0.0481 2.4199 5.7413 17 6 0.6854 4.3760 5.1027 18 6 -1.6439 3.4869 4.9418 19 6 -2.4781 2.2350 4.8542 20 1 -2.0017 1.2660 4.8750 21 6 -3.8497 2.3265 4.7475 22 7 -4.4301 3.5065 4.7226 23 14 -4.8839 0.7746 4.6396 24 1 -5.2680 0.3398 6.0065 25 1 -6.1080 1.0498 3.8453 26 1 -4.0975 -0.2994 3.9812 27 6 1.4857 1.8225 3.7063 28 6 1.7583 1.1058 2.3817 29 1 -0.3634 -1.0012 -0.2318 30 1 -0.3634 0.3000 0.9829 31 1 -0.3634 0.7012 -0.7513 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.9528 1.6905 1.8912 35 1 6.3954 1.6887 1.5798 36 1 7.3484 1.4593 -0.6790 37 1 5.8589 1.2222 -2.6255 38 1 3.4164 1.2147 -2.3131 39 1 -0.3778 1.9832 1.0473 40 1 0.3856 3.4581 0.4063 41 1 -0.8655 3.9116 2.5123 42 1 0.8773 4.2187 2.7051 43 1 0.4398 4.8482 6.0540 44 1 0.4770 5.0695 4.2880 45 1 1.7424 4.1098 5.0919 46 1 -1.8763 4.0144 5.8669 47 1 -1.8651 4.1311 4.0907 48 1 -5.3949 3.5709 4.6471 49 1 2.2575 2.5725 3.8794 50 1 1.4935 1.0976 4.5203 51 1 1.0020 0.3373 2.2218 52 1 2.7451 0.6442 2.4142 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559567909.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:07 Heat of formation + Delta-G solvation = 43.398797 kcal Electronic energy + Delta-G solvation = -27957.652617 eV Core-core repulsion = 24536.166567 eV Total energy + Delta-G solvation = -3421.486050 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.32684 -38.72750 -36.89179 -33.52070 -32.26689 -31.28455 -31.03256 -30.67213 -29.79273 -27.30322 -26.73054 -24.43615 -23.70362 -22.87205 -22.39503 -21.96414 -20.57412 -19.64313 -18.49999 -16.99552 -16.26651 -16.08239 -15.65378 -15.12833 -14.85155 -14.72339 -14.52861 -14.26284 -13.97928 -13.89293 -13.55929 -13.21462 -12.96583 -12.88054 -12.56112 -12.28905 -12.03445 -11.91183 -11.76570 -11.64875 -11.63243 -11.38344 -11.15929 -11.03379 -10.93182 -10.84865 -10.64264 -10.57639 -10.50009 -10.33605 -10.07431 -9.86855 -9.14531 -8.95412 -8.93884 -8.69391 -8.24678 -8.05707 -7.39014 -5.87356 -3.84580 1.31883 1.38883 3.38552 3.44953 3.49388 3.72811 4.01744 4.55610 4.59161 4.64966 4.85191 4.90574 4.96748 5.07755 5.09361 5.24406 5.33009 5.43637 5.46189 5.49183 5.50796 5.56745 5.66351 5.71025 5.76608 5.81065 5.84547 5.89618 5.94776 5.98354 6.00905 6.01680 6.04494 6.08175 6.19054 6.24653 6.33236 6.42022 6.45090 6.50232 6.53455 6.63428 6.63977 6.73554 6.97785 7.03566 7.22024 7.26844 7.57636 7.71308 7.94712 8.06447 8.14408 8.60126 9.20603 9.76524 11.24687 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018892 B = 0.003492 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.785176 B = 8017.161851 C = 8892.190126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.147 4.147 3 C 0.120 3.880 4 H 0.085 0.915 5 C -0.063 4.063 6 C -0.101 4.101 7 C -0.125 4.125 8 C -0.130 4.130 9 C -0.124 4.124 10 C -0.120 4.120 11 N -0.527 5.527 12 C 0.048 3.952 13 C 0.060 3.940 14 N -0.508 5.508 15 C 0.087 3.913 16 H 0.066 0.934 17 C -0.182 4.182 18 C 0.031 3.969 19 C -0.485 4.485 20 H 0.058 0.942 21 C 0.050 3.950 22 N -0.904 5.904 23 Si 0.887 3.113 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.275 1.275 27 C 0.054 3.946 28 C 0.045 3.955 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.135 0.865 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.033 0.967 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.039 0.961 46 H 0.014 0.986 47 H 0.022 0.978 48 H 0.257 0.743 49 H 0.031 0.969 50 H 0.071 0.929 51 H 0.055 0.945 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.481 -4.221 -11.103 21.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.185 4.185 3 C 0.012 3.988 4 H 0.103 0.897 5 C -0.064 4.064 6 C -0.118 4.118 7 C -0.143 4.143 8 C -0.148 4.148 9 C -0.142 4.142 10 C -0.139 4.139 11 N -0.251 5.251 12 C -0.079 4.079 13 C -0.069 4.069 14 N -0.232 5.232 15 C -0.020 4.020 16 H 0.084 0.916 17 C -0.241 4.241 18 C -0.006 4.006 19 C -0.524 4.524 20 H 0.076 0.924 21 C -0.149 4.149 22 N -0.545 5.545 23 Si 0.716 3.284 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.200 1.200 27 C -0.075 4.075 28 C -0.082 4.082 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.153 0.847 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.051 0.949 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.058 0.942 46 H 0.032 0.968 47 H 0.040 0.960 48 H 0.066 0.934 49 H 0.049 0.951 50 H 0.089 0.911 51 H 0.073 0.927 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 18.287 -4.141 -11.108 21.793 hybrid contribution -0.590 -0.744 -0.136 0.959 sum 17.697 -4.885 -11.244 21.528 Atomic orbital electron populations 1.22079 0.95021 1.01699 1.03180 1.22188 0.96622 0.96954 1.02779 1.20648 0.91354 0.93859 0.92989 0.89691 1.19856 0.95058 0.98424 0.93076 1.21327 0.92652 0.97996 0.99873 1.21199 0.95458 1.00578 0.97060 1.21095 0.99424 1.01241 0.93008 1.21032 0.93534 1.01078 0.98570 1.20942 0.95127 1.01227 0.96595 1.62331 1.30243 1.30039 1.02530 1.22454 0.89259 0.98167 0.98022 1.22127 1.01438 0.93517 0.89777 1.62281 1.25816 1.30833 1.04247 1.21888 0.98378 0.92224 0.89554 0.91562 1.22501 0.99204 1.00595 1.01783 1.19170 0.87484 0.96990 0.96959 1.21127 0.90710 0.92956 1.47583 0.92384 1.24987 0.98162 0.95510 0.96202 1.69962 1.09718 1.22599 1.52255 0.86668 0.79880 0.84096 0.77757 1.21065 1.21610 1.19998 1.22154 0.91311 0.97819 0.96236 1.22476 1.00661 0.94385 0.90711 0.92788 0.90747 0.92669 0.91859 0.90840 0.84701 0.86455 0.86642 0.86512 0.86481 0.92376 0.91273 0.89403 0.94888 0.92755 0.92728 0.94202 0.96803 0.96013 0.93377 0.95082 0.91071 0.92670 0.90822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 8.24 37.16 0.31 -1.65 16 2 C -0.15 -1.62 4.86 -26.74 -0.13 -1.75 16 3 C 0.12 1.39 2.17 -68.86 -0.15 1.24 16 4 H 0.09 0.97 7.56 -51.93 -0.39 0.58 16 5 C -0.06 -0.72 5.07 -104.63 -0.53 -1.25 16 6 C -0.10 -1.16 8.67 -39.58 -0.34 -1.51 16 7 C -0.12 -1.29 10.05 -39.59 -0.40 -1.69 16 8 C -0.13 -1.24 10.05 -39.59 -0.40 -1.64 16 9 C -0.12 -1.18 10.05 -39.59 -0.40 -1.58 16 10 C -0.12 -1.24 9.73 -39.59 -0.39 -1.62 16 11 N -0.53 -6.96 3.86 -227.87 -0.88 -7.84 16 12 C 0.05 0.72 5.19 -3.77 -0.02 0.70 16 13 C 0.06 1.04 4.67 -3.77 -0.02 1.02 16 14 N -0.51 -9.37 4.31 -226.49 -0.98 -10.35 16 15 C 0.09 1.75 2.26 -67.71 -0.15 1.60 16 16 H 0.07 1.35 7.96 -51.93 -0.41 0.94 16 17 C -0.18 -3.14 8.37 37.16 0.31 -2.83 16 18 C 0.03 0.78 4.41 -27.88 -0.12 0.65 16 19 C -0.49 -13.40 8.80 -34.44 -0.30 -13.71 16 20 H 0.06 1.61 7.75 -52.49 -0.41 1.20 16 21 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 22 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16 23 Si 0.89 21.94 29.54 -169.99 -5.02 16.91 16 24 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 27 C 0.05 0.82 5.38 -3.77 -0.02 0.80 16 28 C 0.05 0.61 3.41 -3.76 -0.01 0.60 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.08 4.78 -51.93 -0.25 0.83 16 31 H 0.05 0.63 7.93 -51.93 -0.41 0.22 16 32 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 33 H 0.07 0.85 5.90 -51.93 -0.31 0.54 16 34 H 0.14 1.62 5.04 -52.49 -0.26 1.35 16 35 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 36 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 37 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 39 H 0.06 0.92 4.86 -51.93 -0.25 0.67 16 40 H 0.07 0.94 7.98 -51.93 -0.41 0.53 16 41 H 0.09 1.75 6.42 -51.93 -0.33 1.42 16 42 H 0.03 0.56 6.40 -51.93 -0.33 0.23 16 43 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.05 0.95 6.38 -51.93 -0.33 0.62 16 45 H 0.04 0.62 6.89 -51.93 -0.36 0.26 16 46 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.02 0.58 6.48 -51.93 -0.34 0.24 16 48 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 49 H 0.03 0.47 6.90 -51.93 -0.36 0.11 16 50 H 0.07 1.07 8.04 -51.93 -0.42 0.66 16 51 H 0.06 0.80 4.88 -51.93 -0.25 0.55 16 52 H 0.07 0.89 5.59 -51.93 -0.29 0.59 16 LS Contribution 379.97 15.07 5.73 5.73 Total: -1.00 -29.42 379.97 -11.91 -41.33 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -8.64 Total: 1.84 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: -2.86 Total: -21.27 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: -1.12 Total: -44.54 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.42 -11.91 -41.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559567909.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.732 kcal (2) G-P(sol) polarization free energy of solvation -29.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds