Wall clock time and date at job start Tue Mar 31 2020 11:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47118 * 2 1 4 4 H 1.09001 * 109.47393 * 307.73397 * 3 2 1 5 5 C 1.50702 * 109.47491 * 187.73412 * 3 2 1 6 6 C 1.38237 * 119.99824 * 260.89116 * 5 3 2 7 7 C 1.38238 * 119.99653 * 179.76191 * 6 5 3 8 8 C 1.38227 * 119.99987 * 0.50566 * 7 6 5 9 9 C 1.38235 * 120.00061 * 359.74157 * 8 7 6 10 10 C 1.38227 * 120.00196 * 81.15485 * 5 3 2 11 11 N 1.46906 * 109.47479 * 67.73299 * 3 2 1 12 12 C 1.46959 * 111.00068 * 269.86838 * 11 3 2 13 13 C 1.53045 * 109.36492 * 183.18442 * 12 11 3 14 14 N 1.46956 * 109.36458 * 301.60042 * 13 12 11 15 15 C 1.46905 * 110.99834 * 183.19025 * 14 13 12 16 16 H 1.09000 * 109.46876 * 189.60684 * 15 14 13 17 17 C 1.52995 * 109.47172 * 309.60301 * 15 14 13 18 18 C 1.53001 * 109.47461 * 69.60678 * 15 14 13 19 19 C 1.50699 * 109.46981 * 63.47883 * 18 15 14 20 20 H 1.08001 * 120.00422 * 4.99062 * 19 18 15 21 21 C 1.37878 * 120.00015 * 184.99051 * 19 18 15 22 22 N 1.31517 * 119.99933 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00233 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46987 * 89.99668 * 23 21 19 25 25 H 1.48500 * 109.46958 * 210.00015 * 23 21 19 26 26 H 1.48499 * 109.46648 * 330.00042 * 23 21 19 27 27 C 1.46952 * 110.88617 * 59.31922 * 14 13 12 28 28 C 1.46959 * 110.99588 * 33.66366 * 11 3 2 29 29 H 1.09000 * 109.47243 * 166.96606 * 1 2 3 30 30 H 1.09003 * 109.47476 * 286.97033 * 1 2 3 31 31 H 1.09000 * 109.47336 * 46.97496 * 1 2 3 32 32 H 1.08997 * 109.47073 * 239.99827 * 2 1 3 33 33 H 1.09005 * 109.47058 * 119.99677 * 2 1 3 34 34 H 1.08002 * 120.00117 * 359.97438 * 6 5 3 35 35 H 1.08004 * 119.99733 * 180.22211 * 7 6 5 36 36 H 1.08008 * 119.99843 * 179.72498 * 8 7 6 37 37 H 1.08002 * 119.99968 * 179.97438 * 9 8 7 38 38 H 1.08010 * 119.99822 * 0.02562 * 10 5 3 39 39 H 1.09001 * 109.48674 * 63.21725 * 12 11 3 40 40 H 1.09000 * 109.50602 * 303.16478 * 12 11 3 41 41 H 1.08996 * 109.49053 * 181.63008 * 13 12 11 42 42 H 1.09000 * 109.50983 * 61.57383 * 13 12 11 43 43 H 1.09002 * 109.47625 * 180.02562 * 17 15 14 44 44 H 1.09000 * 109.46908 * 60.00402 * 17 15 14 45 45 H 1.09001 * 109.47184 * 300.00541 * 17 15 14 46 46 H 1.08992 * 109.47063 * 183.47796 * 18 15 14 47 47 H 1.08999 * 109.46823 * 303.48580 * 18 15 14 48 48 H 0.96996 * 119.99994 * 179.97438 * 22 21 19 49 49 H 1.09000 * 109.48926 * 60.64828 * 27 14 13 50 50 H 1.08999 * 109.49111 * 180.71390 * 27 14 13 51 51 H 1.09001 * 109.49207 * 296.77975 * 28 11 3 52 52 H 1.08996 * 109.48817 * 56.84562 * 28 11 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.5681 1.9947 -0.8127 5 6 3.5348 1.4468 -0.1912 6 6 4.3709 1.5852 0.9009 7 6 5.7421 1.5843 0.7261 8 6 6.2771 1.4555 -0.5420 9 6 5.4409 1.3224 -1.6346 10 6 4.0698 1.3180 -1.4592 11 7 1.7084 2.0791 1.2817 12 6 0.3939 2.7333 1.2204 13 6 0.1214 3.4500 2.5449 14 7 0.1713 2.4767 3.6449 15 6 -0.1603 3.1133 4.9266 16 1 0.0481 2.4199 5.7413 17 6 0.6854 4.3760 5.1027 18 6 -1.6439 3.4869 4.9418 19 6 -2.4781 2.2350 4.8542 20 1 -2.0017 1.2660 4.8750 21 6 -3.8497 2.3265 4.7475 22 7 -4.4301 3.5065 4.7226 23 14 -4.8839 0.7746 4.6396 24 1 -5.2680 0.3398 6.0065 25 1 -6.1080 1.0498 3.8453 26 1 -4.0975 -0.2994 3.9812 27 6 1.4857 1.8225 3.7063 28 6 1.7583 1.1058 2.3817 29 1 -0.3634 -1.0012 -0.2318 30 1 -0.3634 0.3000 0.9829 31 1 -0.3634 0.7012 -0.7513 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.9528 1.6905 1.8912 35 1 6.3954 1.6887 1.5798 36 1 7.3484 1.4593 -0.6790 37 1 5.8589 1.2222 -2.6255 38 1 3.4164 1.2147 -2.3131 39 1 -0.3778 1.9832 1.0473 40 1 0.3856 3.4581 0.4063 41 1 -0.8655 3.9116 2.5123 42 1 0.8773 4.2187 2.7051 43 1 0.4398 4.8482 6.0540 44 1 0.4770 5.0695 4.2880 45 1 1.7424 4.1098 5.0919 46 1 -1.8763 4.0144 5.8669 47 1 -1.8651 4.1311 4.0907 48 1 -5.3949 3.5709 4.6471 49 1 2.2575 2.5725 3.8794 50 1 1.4935 1.0976 4.5203 51 1 1.0020 0.3373 2.2218 52 1 2.7451 0.6442 2.4142 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559567909.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:06 Heat of formation + Delta-G solvation = 27.681448 kcal Electronic energy + Delta-G solvation = -27958.334173 eV Core-core repulsion = 24536.166567 eV Total energy + Delta-G solvation = -3422.167606 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.35574 -39.77689 -38.10923 -35.18950 -33.91874 -32.19481 -32.06153 -31.75237 -31.04206 -29.18184 -27.80867 -25.68242 -25.16250 -24.47811 -23.22692 -22.85625 -21.79171 -20.82507 -19.89408 -18.33750 -17.81412 -17.31644 -16.79095 -16.49637 -16.04219 -15.96306 -15.73638 -15.45347 -15.33778 -15.05279 -14.57251 -14.38044 -14.18621 -13.89933 -13.88211 -13.67157 -13.43188 -13.26154 -13.05553 -12.86903 -12.83720 -12.76650 -12.55218 -12.40120 -12.36038 -12.11172 -12.02029 -11.99333 -11.69718 -11.56358 -11.52683 -11.30673 -11.07808 -10.86832 -10.46325 -9.69929 -9.48295 -9.15475 -8.82454 -8.08074 -6.12062 0.55893 0.63074 1.41360 1.41848 1.53112 2.47914 2.87394 3.04390 3.14172 3.29962 3.76619 3.91978 4.06989 4.12411 4.15182 4.21233 4.27938 4.29730 4.37490 4.40558 4.44650 4.45074 4.48658 4.55023 4.62052 4.63726 4.70405 4.77600 4.82053 4.84831 4.93966 4.97369 5.03245 5.03659 5.06412 5.14798 5.19011 5.22413 5.25221 5.31200 5.32168 5.45872 5.51603 5.67766 5.70856 5.74293 5.80479 5.91411 6.11304 6.19509 6.25783 6.36384 6.49480 6.57577 7.01146 7.53074 9.04056 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018892 B = 0.003492 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.785176 B = 8017.161851 C = 8892.190126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.139 4.139 3 C 0.124 3.876 4 H 0.087 0.913 5 C -0.076 4.076 6 C -0.117 4.117 7 C -0.134 4.134 8 C -0.134 4.134 9 C -0.127 4.127 10 C -0.127 4.127 11 N -0.524 5.524 12 C 0.056 3.944 13 C 0.067 3.933 14 N -0.526 5.526 15 C 0.096 3.904 16 H 0.063 0.937 17 C -0.170 4.170 18 C 0.038 3.962 19 C -0.492 4.492 20 H 0.055 0.945 21 C -0.004 4.004 22 N -0.941 5.941 23 Si 0.953 3.047 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.268 1.268 27 C 0.056 3.944 28 C 0.054 3.946 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.127 0.873 35 H 0.131 0.869 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.131 0.869 39 H 0.046 0.954 40 H 0.081 0.919 41 H 0.053 0.947 42 H 0.038 0.962 43 H 0.055 0.945 44 H 0.049 0.951 45 H 0.062 0.938 46 H -0.012 1.012 47 H -0.003 1.003 48 H 0.258 0.742 49 H 0.038 0.962 50 H 0.074 0.926 51 H 0.044 0.956 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.638 -5.627 -12.484 24.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.177 4.177 3 C 0.016 3.984 4 H 0.105 0.895 5 C -0.076 4.076 6 C -0.135 4.135 7 C -0.152 4.152 8 C -0.151 4.151 9 C -0.145 4.145 10 C -0.146 4.146 11 N -0.248 5.248 12 C -0.072 4.072 13 C -0.062 4.062 14 N -0.251 5.251 15 C -0.013 4.013 16 H 0.082 0.918 17 C -0.229 4.229 18 C 0.001 3.999 19 C -0.530 4.530 20 H 0.074 0.926 21 C -0.200 4.200 22 N -0.583 5.583 23 Si 0.779 3.221 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.192 1.192 27 C -0.072 4.072 28 C -0.074 4.074 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.145 0.855 35 H 0.149 0.851 36 H 0.155 0.845 37 H 0.157 0.843 38 H 0.149 0.851 39 H 0.064 0.936 40 H 0.100 0.900 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.006 0.994 47 H 0.015 0.985 48 H 0.066 0.934 49 H 0.056 0.944 50 H 0.092 0.908 51 H 0.062 0.938 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 20.464 -5.558 -12.490 24.610 hybrid contribution -1.205 -0.289 0.272 1.268 sum 19.259 -5.847 -12.218 23.545 Atomic orbital electron populations 1.22012 0.95869 1.02055 1.01575 1.22112 0.95643 0.96722 1.03245 1.20645 0.91957 0.93947 0.91871 0.89460 1.19849 0.94525 0.99526 0.93718 1.21348 0.93407 0.99131 0.99590 1.21423 0.95224 1.00392 0.98113 1.21418 1.00718 1.00331 0.92678 1.21360 0.93299 1.00129 0.99727 1.21157 0.95894 1.00965 0.96543 1.62315 1.28717 1.30310 1.03490 1.22320 0.89979 0.98085 0.96777 1.21990 0.99573 0.93724 0.90881 1.62162 1.28227 1.31117 1.03547 1.21589 0.95501 0.93584 0.90591 0.91848 1.22349 0.99897 0.98983 1.01680 1.19016 0.91005 0.95458 0.94422 1.21420 0.91257 0.93597 1.46751 0.92642 1.25808 0.99586 0.98554 0.96049 1.70093 1.09979 1.24762 1.53464 0.85622 0.78098 0.80357 0.77978 1.20277 1.21357 1.19232 1.22198 0.89600 0.97821 0.97586 1.22407 1.01288 0.93839 0.89829 0.92120 0.93495 0.92371 0.90366 0.91292 0.85524 0.85145 0.84515 0.84291 0.85098 0.93596 0.90021 0.92889 0.94397 0.92581 0.93170 0.91899 0.99400 0.98466 0.93371 0.94381 0.90799 0.93761 0.88891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.66 8.24 71.98 0.59 -3.07 16 2 C -0.14 -2.83 4.86 30.59 0.15 -2.68 16 3 C 0.12 2.67 2.17 44.17 0.10 2.77 16 4 H 0.09 1.85 7.56 -2.39 -0.02 1.83 16 5 C -0.08 -1.57 5.07 -19.87 -0.10 -1.67 16 6 C -0.12 -2.49 8.67 22.27 0.19 -2.29 16 7 C -0.13 -2.47 10.05 22.27 0.22 -2.24 16 8 C -0.13 -2.17 10.05 22.27 0.22 -1.95 16 9 C -0.13 -2.04 10.05 22.27 0.22 -1.82 16 10 C -0.13 -2.28 9.73 22.27 0.22 -2.07 16 11 N -0.52 -13.30 3.86 -874.85 -3.38 -16.68 16 12 C 0.06 1.67 5.19 86.31 0.45 2.12 16 13 C 0.07 2.36 4.67 86.31 0.40 2.77 16 14 N -0.53 -19.62 4.31 -870.49 -3.75 -23.37 16 15 C 0.10 3.90 2.26 44.91 0.10 4.00 16 16 H 0.06 2.60 7.96 -2.39 -0.02 2.58 16 17 C -0.17 -5.83 8.37 71.98 0.60 -5.23 16 18 C 0.04 1.99 4.41 29.85 0.13 2.13 16 19 C -0.49 -27.87 8.80 25.60 0.23 -27.65 16 20 H 0.06 3.11 7.75 -2.91 -0.02 3.09 16 21 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 22 N -0.94 -57.93 13.29 21.45 0.28 -57.64 16 23 Si 0.95 45.60 29.54 68.60 2.03 47.63 16 24 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 25 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 26 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 27 C 0.06 1.67 5.38 86.31 0.46 2.14 16 28 C 0.05 1.40 3.41 86.31 0.29 1.69 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.05 1.36 4.78 -2.39 -0.01 1.35 16 31 H 0.06 1.29 7.93 -2.39 -0.02 1.27 16 32 H 0.08 1.39 8.13 -2.39 -0.02 1.37 16 33 H 0.07 1.48 5.90 -2.38 -0.01 1.47 16 34 H 0.13 2.83 5.04 -2.91 -0.01 2.81 16 35 H 0.13 1.96 8.06 -2.91 -0.02 1.93 16 36 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 37 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 38 H 0.13 1.91 8.06 -2.91 -0.02 1.88 16 39 H 0.05 1.49 4.86 -2.39 -0.01 1.47 16 40 H 0.08 2.19 7.98 -2.39 -0.02 2.17 16 41 H 0.05 2.23 6.42 -2.39 -0.02 2.22 16 42 H 0.04 1.29 6.40 -2.39 -0.02 1.28 16 43 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.05 1.75 6.38 -2.39 -0.02 1.73 16 45 H 0.06 1.86 6.89 -2.39 -0.02 1.85 16 46 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 47 H 0.00 -0.17 6.48 -2.39 -0.02 -0.18 16 48 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 49 H 0.04 1.09 6.90 -2.39 -0.02 1.08 16 50 H 0.07 2.15 8.04 -2.39 -0.02 2.13 16 51 H 0.04 1.27 4.88 -2.39 -0.01 1.25 16 52 H 0.09 2.08 5.59 -2.39 -0.01 2.07 16 Total: -1.00 -64.17 379.97 1.02 -63.15 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.89 Total: 19.75 kcal Atomic # 6 Polarization: -37.80 SS G_CDS: 4.95 Total: -32.85 kcal Atomic # 7 Polarization: -90.84 SS G_CDS: -6.84 Total: -97.68 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -64.17 1.02 -63.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559567909.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.832 kcal (2) G-P(sol) polarization free energy of solvation -64.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds