Wall clock time and date at job start Tue Mar 31 2020 11:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47167 * 2 1 4 4 H 1.09002 * 109.46730 * 57.11310 * 3 2 1 5 5 C 1.50693 * 109.47015 * 297.11930 * 3 2 1 6 6 C 1.38238 * 119.99852 * 279.72296 * 5 3 2 7 7 C 1.38241 * 119.99832 * 179.76986 * 6 5 3 8 8 C 1.38232 * 119.99923 * 0.50847 * 7 6 5 9 9 C 1.38233 * 120.00016 * 359.74525 * 8 7 6 10 10 C 1.38233 * 120.00028 * 359.97438 * 9 8 7 11 11 N 1.46894 * 109.46945 * 177.11577 * 3 2 1 12 12 C 1.46958 * 110.99788 * 182.38220 * 11 3 2 13 13 C 1.53049 * 109.36390 * 183.18920 * 12 11 3 14 14 N 1.46952 * 109.36579 * 301.59799 * 13 12 11 15 15 C 1.46904 * 111.00267 * 183.18705 * 14 13 12 16 16 H 1.08996 * 109.46964 * 55.00219 * 15 14 13 17 17 C 1.52996 * 109.46992 * 295.00036 * 15 14 13 18 18 C 1.53001 * 109.47270 * 174.99833 * 15 14 13 19 19 C 1.50698 * 109.47161 * 295.00451 * 18 15 14 20 20 H 1.08004 * 120.00427 * 359.97438 * 19 18 15 21 21 C 1.37883 * 120.00026 * 180.02562 * 19 18 15 22 22 N 1.31518 * 119.99762 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00076 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46838 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47072 * 120.00015 * 23 21 19 26 26 H 1.48502 * 109.47016 * 240.00234 * 23 21 19 27 27 C 1.46958 * 110.88281 * 59.31908 * 14 13 12 28 28 C 1.46960 * 111.00203 * 306.17868 * 11 3 2 29 29 H 1.09003 * 109.47133 * 185.66594 * 1 2 3 30 30 H 1.08996 * 109.47247 * 305.67105 * 1 2 3 31 31 H 1.09002 * 109.47057 * 65.67177 * 1 2 3 32 32 H 1.09006 * 109.46798 * 240.00112 * 2 1 3 33 33 H 1.08995 * 109.47048 * 120.00447 * 2 1 3 34 34 H 1.07997 * 120.00071 * 0.02562 * 6 5 3 35 35 H 1.07993 * 119.99750 * 180.22861 * 7 6 5 36 36 H 1.07995 * 119.99865 * 179.72538 * 8 7 6 37 37 H 1.08010 * 119.99861 * 179.97438 * 9 8 7 38 38 H 1.08007 * 119.99883 * 179.97438 * 10 9 8 39 39 H 1.08998 * 109.48829 * 63.22265 * 12 11 3 40 40 H 1.08996 * 109.50446 * 303.16490 * 12 11 3 41 41 H 1.08995 * 109.48944 * 181.63082 * 13 12 11 42 42 H 1.09007 * 109.50950 * 61.57584 * 13 12 11 43 43 H 1.09008 * 109.46998 * 180.02562 * 17 15 14 44 44 H 1.08996 * 109.46989 * 299.99581 * 17 15 14 45 45 H 1.08998 * 109.46899 * 60.00057 * 17 15 14 46 46 H 1.08994 * 109.47381 * 174.99874 * 18 15 14 47 47 H 1.09004 * 109.47309 * 55.00180 * 18 15 14 48 48 H 0.97000 * 119.99543 * 180.02562 * 22 21 19 49 49 H 1.09003 * 109.48946 * 60.64806 * 27 14 13 50 50 H 1.08998 * 109.49125 * 180.71391 * 27 14 13 51 51 H 1.08992 * 109.48872 * 296.78108 * 28 11 3 52 52 H 1.09003 * 109.48900 * 56.82650 * 28 11 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6350 1.9710 0.8630 5 6 1.5969 2.1320 -1.2646 6 6 2.2913 1.9286 -2.4424 7 6 1.8819 2.5573 -3.6035 8 6 0.7844 3.3976 -3.5844 9 6 0.0932 3.6051 -2.4055 10 6 0.4991 2.9718 -1.2457 11 7 3.5073 1.4431 0.0697 12 6 4.0312 2.8148 0.1286 13 6 5.5612 2.7745 0.1198 14 7 6.0344 1.9835 1.2643 15 6 7.5018 1.9840 1.3340 16 1 7.8641 3.0118 1.3552 17 6 8.0708 1.2678 0.1076 18 6 7.9524 1.2582 2.6033 19 6 7.4954 2.0316 3.8133 20 1 6.9396 2.9493 3.6895 21 6 7.7879 1.5682 5.0786 22 7 8.4651 0.4510 5.2294 23 14 7.2221 2.5273 6.5784 24 1 6.4850 3.7401 6.1413 25 1 6.3286 1.6747 7.4030 26 1 8.4035 2.9298 7.3831 27 6 5.5105 0.6118 1.2055 28 6 3.9805 0.6520 1.2143 29 1 -0.3633 -1.0227 0.1015 30 1 -0.3633 0.5992 0.8348 31 1 -0.3633 0.4234 -0.9364 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.1512 1.2753 -2.4565 35 1 2.4222 2.3956 -4.5245 36 1 0.4673 3.8923 -4.4906 37 1 -0.7640 4.2620 -2.3905 38 1 -0.0408 3.1343 -0.3244 39 1 3.6854 3.2972 1.0429 40 1 3.6773 3.3770 -0.7355 41 1 5.9521 3.7893 0.1927 42 1 5.9080 2.3169 -0.8067 43 1 9.1596 1.2678 0.1596 44 1 7.7085 0.2400 0.0866 45 1 7.7498 1.7849 -0.7966 46 1 9.0395 1.1805 2.6109 47 1 7.5166 0.2593 2.6248 48 1 8.6705 0.1248 6.1195 49 1 5.8563 0.1293 0.2913 50 1 5.8644 0.0499 2.0698 51 1 3.6341 1.1099 2.1408 52 1 3.5893 -0.3628 1.1416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559567910.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:09 Heat of formation + Delta-G solvation = 31.469129 kcal Electronic energy + Delta-G solvation = -27675.838203 eV Core-core repulsion = 24253.834843 eV Total energy + Delta-G solvation = -3422.003360 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.12589 -38.71878 -36.66674 -33.97342 -32.49499 -31.21344 -30.94326 -30.51788 -29.85835 -27.31680 -26.57246 -24.16368 -23.70872 -22.89746 -22.74765 -21.90781 -20.34102 -19.78431 -18.48851 -16.96206 -16.25518 -16.12126 -15.61969 -15.00017 -14.87736 -14.51382 -14.46323 -14.39421 -14.05112 -13.88331 -13.62692 -13.40777 -13.13822 -12.90532 -12.64887 -12.45110 -12.10108 -12.00711 -11.80464 -11.71131 -11.43993 -11.27692 -11.21385 -11.11293 -11.03592 -10.86168 -10.75871 -10.54192 -10.38800 -10.29242 -10.13269 -9.80492 -9.11996 -8.97148 -8.94479 -8.74570 -8.25535 -8.18147 -7.40375 -5.88586 -3.86122 1.27398 1.35207 3.37637 3.45269 3.50954 3.69588 3.97375 4.55113 4.57101 4.63194 4.83369 4.91065 4.96281 5.06002 5.11394 5.20796 5.33577 5.40888 5.46953 5.48537 5.49712 5.57860 5.59968 5.70081 5.76098 5.80264 5.84340 5.87064 5.90646 5.95800 6.00870 6.03235 6.05741 6.09143 6.16026 6.20216 6.30433 6.38710 6.43100 6.46088 6.51522 6.59170 6.66593 6.75937 6.93742 7.01451 7.22666 7.26167 7.57909 7.72368 7.95394 8.05733 8.14127 8.59302 9.20441 9.75666 11.23360 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017163 B = 0.003303 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.016786 B = 8474.512328 C = 9003.768600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.122 3.878 4 H 0.047 0.953 5 C -0.067 4.067 6 C -0.091 4.091 7 C -0.126 4.126 8 C -0.126 4.126 9 C -0.125 4.125 10 C -0.117 4.117 11 N -0.531 5.531 12 C 0.061 3.939 13 C 0.056 3.944 14 N -0.512 5.512 15 C 0.087 3.913 16 H 0.068 0.932 17 C -0.183 4.183 18 C 0.029 3.971 19 C -0.488 4.488 20 H 0.060 0.940 21 C 0.050 3.950 22 N -0.904 5.904 23 Si 0.888 3.112 24 H -0.274 1.274 25 H -0.287 1.287 26 H -0.288 1.288 27 C 0.059 3.941 28 C 0.055 3.945 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.130 0.870 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.039 0.961 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.034 0.966 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.041 0.959 46 H 0.018 0.982 47 H 0.020 0.980 48 H 0.256 0.744 49 H 0.032 0.968 50 H 0.094 0.906 51 H 0.043 0.957 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.935 1.940 -16.597 23.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C 0.014 3.986 4 H 0.065 0.935 5 C -0.067 4.067 6 C -0.109 4.109 7 C -0.144 4.144 8 C -0.145 4.145 9 C -0.143 4.143 10 C -0.135 4.135 11 N -0.256 5.256 12 C -0.067 4.067 13 C -0.073 4.073 14 N -0.236 5.236 15 C -0.021 4.021 16 H 0.086 0.914 17 C -0.242 4.242 18 C -0.008 4.008 19 C -0.527 4.527 20 H 0.078 0.922 21 C -0.149 4.149 22 N -0.545 5.545 23 Si 0.717 3.283 24 H -0.198 1.198 25 H -0.214 1.214 26 H -0.214 1.214 27 C -0.069 4.069 28 C -0.072 4.072 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.148 0.852 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.057 0.943 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.052 0.948 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.060 0.940 46 H 0.036 0.964 47 H 0.038 0.962 48 H 0.066 0.934 49 H 0.050 0.950 50 H 0.112 0.888 51 H 0.061 0.939 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.855 1.840 -16.440 22.914 hybrid contribution -0.272 0.554 0.894 1.087 sum -16.127 2.394 -15.545 22.527 Atomic orbital electron populations 1.21768 0.95624 1.01527 1.01842 1.21644 0.95610 0.95110 1.03019 1.20583 0.88354 0.95792 0.93881 0.93508 1.19763 0.95157 0.96724 0.95104 1.21091 0.99268 0.99012 0.91519 1.21185 0.97154 0.97757 0.98304 1.21105 0.96346 0.99103 0.97901 1.21050 1.00101 1.00182 0.92944 1.21022 0.97056 0.97186 0.98250 1.62210 1.06921 1.13296 1.43183 1.22122 0.95240 0.88998 1.00309 1.22112 0.93667 0.98463 0.93080 1.62284 1.10042 1.11923 1.39305 1.21889 0.84975 0.99688 0.95533 0.91367 1.22501 1.01376 1.01046 0.99236 1.19227 0.95951 0.95491 0.90172 1.21217 1.33077 1.08232 0.90180 0.92154 1.25005 0.95730 0.95193 0.98971 1.69976 1.40900 1.21416 1.22178 0.86596 0.78255 0.80184 0.83306 1.19838 1.21357 1.21402 1.22155 0.92540 0.91057 1.01165 1.22284 0.96114 0.97545 0.91294 0.92682 0.92905 0.92566 0.91080 0.91025 0.85194 0.86391 0.86578 0.86461 0.86523 0.94276 0.91059 0.91194 0.94773 0.92715 0.92920 0.94043 0.96399 0.96210 0.93401 0.94970 0.88821 0.93852 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.42 37.16 0.35 -1.01 16 2 C -0.12 -1.22 5.08 -26.73 -0.14 -1.36 16 3 C 0.12 1.43 1.78 -68.87 -0.12 1.31 16 4 H 0.05 0.59 8.00 -51.93 -0.42 0.17 16 5 C -0.07 -0.74 2.99 -104.63 -0.31 -1.06 16 6 C -0.09 -1.00 8.60 -39.58 -0.34 -1.35 16 7 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 8 C -0.13 -1.17 10.05 -39.59 -0.40 -1.56 16 9 C -0.12 -1.17 10.05 -39.59 -0.40 -1.56 16 10 C -0.12 -1.19 8.90 -39.59 -0.35 -1.54 16 11 N -0.53 -7.20 3.86 -227.89 -0.88 -8.08 16 12 C 0.06 0.89 5.31 -3.77 -0.02 0.87 16 13 C 0.06 0.88 5.25 -3.77 -0.02 0.86 16 14 N -0.51 -9.69 4.41 -226.49 -1.00 -10.69 16 15 C 0.09 1.77 2.30 -67.71 -0.16 1.62 16 16 H 0.07 1.43 8.11 -51.93 -0.42 1.01 16 17 C -0.18 -3.18 8.49 37.16 0.32 -2.87 16 18 C 0.03 0.72 4.27 -27.88 -0.12 0.60 16 19 C -0.49 -13.63 8.84 -34.44 -0.30 -13.93 16 20 H 0.06 1.70 7.74 -52.48 -0.41 1.30 16 21 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 22 N -0.90 -27.12 13.29 55.43 0.74 -26.39 16 23 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 24 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 27 C 0.06 1.05 4.82 -3.77 -0.02 1.03 16 28 C 0.06 0.84 5.17 -3.77 -0.02 0.82 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.52 7.07 -51.93 -0.37 0.15 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.77 6.09 -51.93 -0.32 0.46 16 34 H 0.13 1.52 7.71 -52.49 -0.40 1.11 16 35 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 38 H 0.12 1.07 8.04 -52.48 -0.42 0.65 16 39 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.96 6.59 -51.93 -0.34 0.62 16 41 H 0.07 1.10 8.12 -51.93 -0.42 0.67 16 42 H 0.03 0.54 6.60 -51.93 -0.34 0.19 16 43 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 44 H 0.05 0.92 6.46 -51.93 -0.34 0.58 16 45 H 0.04 0.65 6.59 -51.93 -0.34 0.31 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.02 0.52 6.12 -51.93 -0.32 0.21 16 48 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 49 H 0.03 0.56 6.46 -51.93 -0.34 0.22 16 50 H 0.09 1.93 6.07 -51.93 -0.32 1.61 16 51 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 52 H 0.08 1.04 5.96 -51.93 -0.31 0.73 16 LS Contribution 390.44 15.07 5.88 5.88 Total: -1.00 -29.49 390.44 -12.00 -41.49 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -9.18 Total: 0.14 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -2.55 Total: -19.42 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: -1.14 Total: -45.15 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.49 -12.00 -41.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559567910.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.962 kcal (2) G-P(sol) polarization free energy of solvation -29.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds