Wall clock time and date at job start Tue Mar 31 2020 11:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47167 * 2 1 4 4 H 1.09002 * 109.46730 * 57.11310 * 3 2 1 5 5 C 1.50693 * 109.47015 * 297.11930 * 3 2 1 6 6 C 1.38238 * 119.99852 * 279.72296 * 5 3 2 7 7 C 1.38241 * 119.99832 * 179.76986 * 6 5 3 8 8 C 1.38232 * 119.99923 * 0.50847 * 7 6 5 9 9 C 1.38233 * 120.00016 * 359.74525 * 8 7 6 10 10 C 1.38233 * 120.00028 * 359.97438 * 9 8 7 11 11 N 1.46894 * 109.46945 * 177.11577 * 3 2 1 12 12 C 1.46958 * 110.99788 * 182.38220 * 11 3 2 13 13 C 1.53049 * 109.36390 * 183.18920 * 12 11 3 14 14 N 1.46952 * 109.36579 * 301.59799 * 13 12 11 15 15 C 1.46904 * 111.00267 * 183.18705 * 14 13 12 16 16 H 1.08996 * 109.46964 * 55.00219 * 15 14 13 17 17 C 1.52996 * 109.46992 * 295.00036 * 15 14 13 18 18 C 1.53001 * 109.47270 * 174.99833 * 15 14 13 19 19 C 1.50698 * 109.47161 * 295.00451 * 18 15 14 20 20 H 1.08004 * 120.00427 * 359.97438 * 19 18 15 21 21 C 1.37883 * 120.00026 * 180.02562 * 19 18 15 22 22 N 1.31518 * 119.99762 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00076 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46838 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47072 * 120.00015 * 23 21 19 26 26 H 1.48502 * 109.47016 * 240.00234 * 23 21 19 27 27 C 1.46958 * 110.88281 * 59.31908 * 14 13 12 28 28 C 1.46960 * 111.00203 * 306.17868 * 11 3 2 29 29 H 1.09003 * 109.47133 * 185.66594 * 1 2 3 30 30 H 1.08996 * 109.47247 * 305.67105 * 1 2 3 31 31 H 1.09002 * 109.47057 * 65.67177 * 1 2 3 32 32 H 1.09006 * 109.46798 * 240.00112 * 2 1 3 33 33 H 1.08995 * 109.47048 * 120.00447 * 2 1 3 34 34 H 1.07997 * 120.00071 * 0.02562 * 6 5 3 35 35 H 1.07993 * 119.99750 * 180.22861 * 7 6 5 36 36 H 1.07995 * 119.99865 * 179.72538 * 8 7 6 37 37 H 1.08010 * 119.99861 * 179.97438 * 9 8 7 38 38 H 1.08007 * 119.99883 * 179.97438 * 10 9 8 39 39 H 1.08998 * 109.48829 * 63.22265 * 12 11 3 40 40 H 1.08996 * 109.50446 * 303.16490 * 12 11 3 41 41 H 1.08995 * 109.48944 * 181.63082 * 13 12 11 42 42 H 1.09007 * 109.50950 * 61.57584 * 13 12 11 43 43 H 1.09008 * 109.46998 * 180.02562 * 17 15 14 44 44 H 1.08996 * 109.46989 * 299.99581 * 17 15 14 45 45 H 1.08998 * 109.46899 * 60.00057 * 17 15 14 46 46 H 1.08994 * 109.47381 * 174.99874 * 18 15 14 47 47 H 1.09004 * 109.47309 * 55.00180 * 18 15 14 48 48 H 0.97000 * 119.99543 * 180.02562 * 22 21 19 49 49 H 1.09003 * 109.48946 * 60.64806 * 27 14 13 50 50 H 1.08998 * 109.49125 * 180.71391 * 27 14 13 51 51 H 1.08992 * 109.48872 * 296.78108 * 28 11 3 52 52 H 1.09003 * 109.48900 * 56.82650 * 28 11 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6350 1.9710 0.8630 5 6 1.5969 2.1320 -1.2646 6 6 2.2913 1.9286 -2.4424 7 6 1.8819 2.5573 -3.6035 8 6 0.7844 3.3976 -3.5844 9 6 0.0932 3.6051 -2.4055 10 6 0.4991 2.9718 -1.2457 11 7 3.5073 1.4431 0.0697 12 6 4.0312 2.8148 0.1286 13 6 5.5612 2.7745 0.1198 14 7 6.0344 1.9835 1.2643 15 6 7.5018 1.9840 1.3340 16 1 7.8641 3.0118 1.3552 17 6 8.0708 1.2678 0.1076 18 6 7.9524 1.2582 2.6033 19 6 7.4954 2.0316 3.8133 20 1 6.9396 2.9493 3.6895 21 6 7.7879 1.5682 5.0786 22 7 8.4651 0.4510 5.2294 23 14 7.2221 2.5273 6.5784 24 1 6.4850 3.7401 6.1413 25 1 6.3286 1.6747 7.4030 26 1 8.4035 2.9298 7.3831 27 6 5.5105 0.6118 1.2055 28 6 3.9805 0.6520 1.2143 29 1 -0.3633 -1.0227 0.1015 30 1 -0.3633 0.5992 0.8348 31 1 -0.3633 0.4234 -0.9364 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.1512 1.2753 -2.4565 35 1 2.4222 2.3956 -4.5245 36 1 0.4673 3.8923 -4.4906 37 1 -0.7640 4.2620 -2.3905 38 1 -0.0408 3.1343 -0.3244 39 1 3.6854 3.2972 1.0429 40 1 3.6773 3.3770 -0.7355 41 1 5.9521 3.7893 0.1927 42 1 5.9080 2.3169 -0.8067 43 1 9.1596 1.2678 0.1596 44 1 7.7085 0.2400 0.0866 45 1 7.7498 1.7849 -0.7966 46 1 9.0395 1.1805 2.6109 47 1 7.5166 0.2593 2.6248 48 1 8.6705 0.1248 6.1195 49 1 5.8563 0.1293 0.2913 50 1 5.8644 0.0499 2.0698 51 1 3.6341 1.1099 2.1408 52 1 3.5893 -0.3628 1.1416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559567910.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:08 Heat of formation + Delta-G solvation = 15.975888 kcal Electronic energy + Delta-G solvation = -27676.510040 eV Core-core repulsion = 24253.834843 eV Total energy + Delta-G solvation = -3422.675197 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.14293 -39.86926 -37.85071 -35.37732 -34.31278 -32.25654 -31.98742 -31.63510 -30.98663 -29.20988 -27.69290 -25.51404 -24.93941 -24.61967 -23.54572 -22.79895 -21.68952 -20.83688 -19.95344 -18.35275 -17.80349 -17.38084 -16.56105 -16.51323 -16.12173 -15.92972 -15.65111 -15.46428 -15.22545 -15.07200 -14.87985 -14.55488 -14.17116 -14.11991 -13.76502 -13.69952 -13.47975 -13.33434 -13.21494 -12.94531 -12.83392 -12.61353 -12.47028 -12.44182 -12.37278 -12.18404 -11.95060 -11.90211 -11.85084 -11.71062 -11.45305 -11.19501 -11.07559 -10.91752 -10.47693 -9.71498 -9.52035 -9.34413 -8.88424 -8.10317 -6.14702 0.51938 0.60379 1.39476 1.40718 1.53544 2.46546 2.80721 3.01375 3.12335 3.27460 3.70564 3.95995 4.03916 4.10627 4.13501 4.25341 4.27423 4.30683 4.38671 4.40077 4.40994 4.46325 4.50682 4.54610 4.59546 4.61799 4.67284 4.74788 4.83036 4.84799 4.92629 4.97229 5.01128 5.07337 5.10257 5.14463 5.19365 5.23490 5.26877 5.28314 5.33124 5.39278 5.50895 5.64879 5.70235 5.72046 5.76402 5.90604 6.05526 6.15684 6.22008 6.34563 6.46181 6.55162 6.99146 7.51023 9.01787 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017163 B = 0.003303 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.016786 B = 8474.512328 C = 9003.768600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.113 4.113 3 C 0.125 3.875 4 H 0.039 0.961 5 C -0.076 4.076 6 C -0.103 4.103 7 C -0.131 4.131 8 C -0.128 4.128 9 C -0.127 4.127 10 C -0.125 4.125 11 N -0.525 5.525 12 C 0.071 3.929 13 C 0.059 3.941 14 N -0.531 5.531 15 C 0.095 3.905 16 H 0.062 0.938 17 C -0.171 4.171 18 C 0.036 3.964 19 C -0.497 4.497 20 H 0.054 0.946 21 C -0.003 4.003 22 N -0.939 5.939 23 Si 0.954 3.046 24 H -0.268 1.268 25 H -0.283 1.283 26 H -0.282 1.282 27 C 0.066 3.934 28 C 0.065 3.935 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.121 0.879 35 H 0.133 0.867 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.123 0.877 39 H 0.022 0.978 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.043 0.957 43 H 0.055 0.945 44 H 0.049 0.951 45 H 0.065 0.935 46 H -0.009 1.009 47 H 0.000 1.000 48 H 0.258 0.742 49 H 0.040 0.960 50 H 0.058 0.942 51 H 0.023 0.977 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.825 3.066 -18.143 25.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C 0.017 3.983 4 H 0.057 0.943 5 C -0.077 4.077 6 C -0.121 4.121 7 C -0.149 4.149 8 C -0.146 4.146 9 C -0.145 4.145 10 C -0.143 4.143 11 N -0.250 5.250 12 C -0.058 4.058 13 C -0.069 4.069 14 N -0.256 5.256 15 C -0.013 4.013 16 H 0.080 0.920 17 C -0.230 4.230 18 C -0.001 4.001 19 C -0.536 4.536 20 H 0.073 0.927 21 C -0.199 4.199 22 N -0.581 5.581 23 Si 0.780 3.220 24 H -0.192 1.192 25 H -0.209 1.209 26 H -0.208 1.208 27 C -0.062 4.062 28 C -0.063 4.063 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.139 0.861 35 H 0.151 0.849 36 H 0.157 0.843 37 H 0.156 0.844 38 H 0.141 0.859 39 H 0.041 0.959 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.061 0.939 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.084 0.916 46 H 0.009 0.991 47 H 0.018 0.982 48 H 0.067 0.933 49 H 0.058 0.942 50 H 0.076 0.924 51 H 0.041 0.959 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.757 2.974 -18.001 25.460 hybrid contribution 0.290 0.214 1.325 1.373 sum -17.466 3.188 -16.676 24.359 Atomic orbital electron populations 1.21708 0.94333 1.02191 1.01874 1.21615 0.96703 0.94149 1.02595 1.20602 0.86750 0.96700 0.94238 0.94326 1.19684 0.95926 0.97475 0.94591 1.21078 0.99352 0.99586 0.92111 1.21409 0.97501 0.97527 0.98457 1.21421 0.95799 0.98605 0.98783 1.21345 1.00582 0.99977 0.92586 1.21169 0.96928 0.97140 0.99086 1.62218 1.08414 1.12575 1.41779 1.22021 0.94167 0.89486 1.00089 1.22139 0.94604 0.98059 0.92073 1.62185 1.09043 1.12849 1.41478 1.21595 0.86395 0.98832 0.94500 0.91953 1.22348 1.01306 1.00709 0.98594 1.19069 0.93988 0.94881 0.92169 1.21489 1.32595 1.08068 0.91400 0.92739 1.25815 0.95914 0.96143 1.02060 1.70096 1.42125 1.22937 1.22924 0.85560 0.77923 0.78893 0.79609 1.19229 1.20881 1.20754 1.22009 0.94188 0.90237 0.99795 1.22145 0.94296 0.98749 0.91115 0.91732 0.92727 0.92596 0.91296 0.91537 0.86145 0.84894 0.84347 0.84408 0.85877 0.95936 0.89582 0.90841 0.93876 0.92547 0.93171 0.91646 0.99073 0.98176 0.93274 0.94211 0.92378 0.95890 0.88731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.42 71.98 0.68 -1.71 16 2 C -0.11 -2.26 5.08 30.60 0.16 -2.10 16 3 C 0.13 2.82 1.78 44.17 0.08 2.90 16 4 H 0.04 0.95 8.00 -2.39 -0.02 0.93 16 5 C -0.08 -1.58 2.99 -19.87 -0.06 -1.64 16 6 C -0.10 -2.11 8.60 22.27 0.19 -1.92 16 7 C -0.13 -2.28 10.05 22.27 0.22 -2.05 16 8 C -0.13 -1.99 10.05 22.27 0.22 -1.76 16 9 C -0.13 -2.03 10.05 22.27 0.22 -1.80 16 10 C -0.12 -2.30 8.90 22.27 0.20 -2.10 16 11 N -0.53 -13.86 3.86 -874.90 -3.37 -17.23 16 12 C 0.07 1.97 5.31 86.31 0.46 2.43 16 13 C 0.06 1.83 5.25 86.31 0.45 2.28 16 14 N -0.53 -20.25 4.41 -870.49 -3.84 -24.09 16 15 C 0.10 3.92 2.30 44.91 0.10 4.03 16 16 H 0.06 2.63 8.11 -2.39 -0.02 2.61 16 17 C -0.17 -5.84 8.49 71.98 0.61 -5.23 16 18 C 0.04 1.88 4.27 29.85 0.13 2.01 16 19 C -0.50 -28.44 8.84 25.60 0.23 -28.21 16 20 H 0.05 3.12 7.74 -2.91 -0.02 3.10 16 21 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 22 N -0.94 -57.71 13.29 21.45 0.28 -57.42 16 23 Si 0.95 45.89 29.54 68.60 2.03 47.92 16 24 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 25 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 26 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 27 C 0.07 2.39 4.82 86.31 0.42 2.80 16 28 C 0.06 1.98 5.17 86.31 0.45 2.43 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 0.94 7.07 -2.39 -0.02 0.92 16 32 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.07 1.38 6.09 -2.39 -0.01 1.37 16 34 H 0.12 2.66 7.71 -2.91 -0.02 2.64 16 35 H 0.13 1.83 8.06 -2.91 -0.02 1.81 16 36 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 37 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 38 H 0.12 2.04 8.04 -2.91 -0.02 2.02 16 39 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.09 2.19 6.59 -2.39 -0.02 2.17 16 41 H 0.07 2.21 8.12 -2.39 -0.02 2.19 16 42 H 0.04 1.27 6.60 -2.38 -0.02 1.25 16 43 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 44 H 0.05 1.73 6.46 -2.39 -0.02 1.71 16 45 H 0.06 1.92 6.59 -2.39 -0.02 1.91 16 46 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 47 H 0.00 0.00 6.12 -2.38 -0.01 -0.01 16 48 H 0.26 15.04 8.31 -92.71 -0.77 14.26 16 49 H 0.04 1.37 6.46 -2.39 -0.02 1.35 16 50 H 0.06 2.51 6.07 -2.39 -0.01 2.50 16 51 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 52 H 0.09 2.54 5.96 -2.39 -0.01 2.52 16 Total: -1.00 -64.07 390.44 1.18 -62.89 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.86 Total: 17.32 kcal Atomic # 6 Polarization: -34.60 SS G_CDS: 5.22 Total: -29.38 kcal Atomic # 7 Polarization: -91.82 SS G_CDS: -6.93 Total: -98.75 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -64.07 1.18 -62.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559567910.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.866 kcal (2) G-P(sol) polarization free energy of solvation -64.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds