Wall clock time and date at job start Tue Mar 31 2020 11:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47259 * 2 1 4 4 H 1.08995 * 109.47004 * 54.99660 * 3 2 1 5 5 C 1.50695 * 109.47042 * 175.00265 * 3 2 1 6 6 C 1.38233 * 120.00368 * 45.41118 * 5 3 2 7 7 C 1.38232 * 120.00131 * 179.76893 * 6 5 3 8 8 C 1.38237 * 120.00260 * 0.50481 * 7 6 5 9 9 C 1.38242 * 119.99354 * 359.75295 * 8 7 6 10 10 C 1.38229 * 120.00385 * 359.97438 * 9 8 7 11 11 N 1.46897 * 109.46767 * 295.00266 * 3 2 1 12 12 C 1.46962 * 110.99669 * 166.16772 * 11 3 2 13 13 C 1.53052 * 109.36618 * 183.18681 * 12 11 3 14 14 N 1.46964 * 109.36147 * 301.59952 * 13 12 11 15 15 C 1.46902 * 110.99733 * 183.18839 * 14 13 12 16 16 H 1.09003 * 109.46811 * 190.85810 * 15 14 13 17 17 C 1.52999 * 109.47164 * 310.85775 * 15 14 13 18 18 C 1.52996 * 109.47321 * 70.85947 * 15 14 13 19 19 C 1.50706 * 109.47335 * 62.63323 * 18 15 14 20 20 H 1.07995 * 119.99366 * 5.30533 * 19 18 15 21 21 C 1.37874 * 120.00256 * 185.30454 * 19 18 15 22 22 N 1.31506 * 120.00191 * 179.97438 * 21 19 18 23 23 Si 1.86810 * 119.99823 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47232 * 89.99993 * 23 21 19 25 25 H 1.48502 * 109.46987 * 209.99967 * 23 21 19 26 26 H 1.48506 * 109.46805 * 329.99714 * 23 21 19 27 27 C 1.46949 * 110.88322 * 59.31856 * 14 13 12 28 28 C 1.46963 * 111.00070 * 289.96003 * 11 3 2 29 29 H 1.08994 * 109.47258 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46934 * 300.00075 * 1 2 3 31 31 H 1.09004 * 109.46788 * 59.99863 * 1 2 3 32 32 H 1.09004 * 109.46934 * 239.99925 * 2 1 3 33 33 H 1.09004 * 109.46788 * 120.00137 * 2 1 3 34 34 H 1.08002 * 119.99882 * 0.02562 * 6 5 3 35 35 H 1.08000 * 120.00200 * 180.23266 * 7 6 5 36 36 H 1.07993 * 120.00478 * 179.72357 * 8 7 6 37 37 H 1.08001 * 119.99306 * 179.97438 * 9 8 7 38 38 H 1.08000 * 120.00497 * 179.97438 * 10 9 8 39 39 H 1.08995 * 109.49421 * 63.21682 * 12 11 3 40 40 H 1.08997 * 109.50524 * 303.15818 * 12 11 3 41 41 H 1.08994 * 109.49264 * 181.62866 * 13 12 11 42 42 H 1.08999 * 109.48677 * 61.55782 * 13 12 11 43 43 H 1.08999 * 109.46872 * 300.00352 * 17 15 14 44 44 H 1.08997 * 109.47059 * 180.02562 * 17 15 14 45 45 H 1.09002 * 109.47106 * 59.99755 * 17 15 14 46 46 H 1.08998 * 109.47312 * 182.63950 * 18 15 14 47 47 H 1.09002 * 109.47322 * 302.63771 * 18 15 14 48 48 H 0.96999 * 120.00216 * 179.97438 * 22 21 19 49 49 H 1.08995 * 109.49260 * 60.64766 * 27 14 13 50 50 H 1.09005 * 109.48890 * 180.71344 * 27 14 13 51 51 H 1.09000 * 109.48791 * 296.78583 * 28 11 3 52 52 H 1.08994 * 109.48615 * 56.84776 * 28 11 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5420 1.4442 0.1238 6 6 4.2998 0.5802 -0.6443 7 6 5.6778 0.5852 -0.5343 8 6 6.2973 1.4469 0.3515 9 6 5.5391 2.3072 1.1236 10 6 4.1615 2.3061 1.0094 11 7 1.6514 2.0992 -1.2552 12 6 1.8274 3.5554 -1.1641 13 6 1.3382 4.2078 -2.4593 14 7 2.0912 3.6591 -3.5959 15 6 1.7026 4.3160 -4.8511 16 1 2.1251 3.7684 -5.6936 17 6 0.1771 4.3325 -4.9670 18 6 2.2303 5.7520 -4.8599 19 6 3.7365 5.7341 -4.8110 20 1 4.2672 4.7950 -4.8635 21 6 4.4368 6.9165 -4.6992 22 7 5.7510 6.9007 -4.6560 23 14 3.5186 8.5407 -4.6078 24 1 3.2292 8.8666 -3.1882 25 1 4.3535 9.6155 -5.2020 26 1 2.2431 8.4314 -5.3605 27 6 1.9153 2.2031 -3.6870 28 6 2.4045 1.5507 -2.3918 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8156 -0.0958 -1.3335 35 1 6.2701 -0.0872 -1.1371 36 1 7.3736 1.4477 0.4408 37 1 6.0231 2.9801 1.8159 38 1 3.5691 2.9779 1.6128 39 1 2.8826 3.7857 -1.0170 40 1 1.2506 3.9398 -0.3230 41 1 1.4945 5.2851 -2.4055 42 1 0.2764 4.0002 -2.5925 43 1 -0.1988 3.3094 -4.9606 44 1 -0.1112 4.8195 -5.8985 45 1 -0.2454 4.8800 -4.1244 46 1 1.9023 6.2541 -5.7701 47 1 1.8450 6.2861 -3.9914 48 1 6.2437 7.7326 -4.5778 49 1 0.8601 1.9727 -3.8341 50 1 2.4924 1.8189 -4.5281 51 1 3.4663 1.7582 -2.2586 52 1 2.2482 0.4734 -2.4456 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559567911.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:11 Heat of formation + Delta-G solvation = 37.669234 kcal Electronic energy + Delta-G solvation = -28239.922505 eV Core-core repulsion = 24818.188002 eV Total energy + Delta-G solvation = -3421.734503 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.34453 -38.52703 -36.64894 -33.78112 -32.35382 -31.30329 -30.93489 -30.51070 -29.89922 -27.80036 -26.56162 -24.47892 -23.72451 -22.56096 -22.30718 -21.93086 -20.45086 -19.60313 -18.55948 -16.71194 -16.53159 -16.29237 -15.56428 -15.20446 -14.66370 -14.59914 -14.47542 -14.16731 -13.99199 -13.81140 -13.50315 -13.33650 -13.24767 -12.80424 -12.49421 -12.35428 -12.25601 -11.95998 -11.82692 -11.68860 -11.56196 -11.42278 -11.35866 -11.04950 -10.94722 -10.80856 -10.69918 -10.55512 -10.45903 -10.30835 -9.95712 -9.66836 -9.49235 -8.99075 -8.80522 -8.62605 -8.38908 -8.11863 -7.41747 -5.87641 -3.80905 1.42089 1.49378 3.36827 3.44621 3.47301 3.82127 4.12551 4.52115 4.56931 4.61748 4.85092 5.04533 5.10827 5.12320 5.16657 5.23019 5.42173 5.45502 5.46409 5.48716 5.59566 5.63959 5.68919 5.72051 5.75997 5.81565 5.82809 5.86267 5.92675 5.94021 5.97338 6.06981 6.08769 6.10449 6.19138 6.30625 6.33475 6.37651 6.45154 6.52324 6.53961 6.58094 6.60266 6.65194 6.84306 7.07966 7.15329 7.22459 7.25820 7.36559 7.84564 7.88531 8.02027 8.75518 9.24578 9.75610 11.26605 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012147 B = 0.004642 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.583315 B = 6030.309458 C = 7413.780543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 C 0.122 3.878 4 H 0.084 0.916 5 C -0.113 4.113 6 C -0.105 4.105 7 C -0.121 4.121 8 C -0.118 4.118 9 C -0.120 4.120 10 C -0.109 4.109 11 N -0.519 5.519 12 C 0.056 3.944 13 C 0.061 3.939 14 N -0.507 5.507 15 C 0.097 3.903 16 H 0.072 0.928 17 C -0.185 4.185 18 C -0.004 4.004 19 C -0.485 4.485 20 H 0.076 0.924 21 C 0.062 3.938 22 N -0.909 5.909 23 Si 0.871 3.129 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.269 1.269 27 C 0.057 3.943 28 C 0.049 3.951 29 H 0.045 0.955 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.049 0.951 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.034 0.966 43 H 0.043 0.957 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.015 0.985 47 H 0.011 0.989 48 H 0.259 0.741 49 H 0.031 0.969 50 H 0.072 0.928 51 H 0.057 0.943 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.874 -14.285 11.100 19.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.147 4.147 3 C 0.014 3.986 4 H 0.102 0.898 5 C -0.115 4.115 6 C -0.123 4.123 7 C -0.139 4.139 8 C -0.137 4.137 9 C -0.138 4.138 10 C -0.127 4.127 11 N -0.242 5.242 12 C -0.072 4.072 13 C -0.068 4.068 14 N -0.230 5.230 15 C -0.012 4.012 16 H 0.090 0.910 17 C -0.244 4.244 18 C -0.041 4.041 19 C -0.524 4.524 20 H 0.095 0.905 21 C -0.137 4.137 22 N -0.549 5.549 23 Si 0.700 3.300 24 H -0.206 1.206 25 H -0.217 1.217 26 H -0.194 1.194 27 C -0.071 4.071 28 C -0.078 4.078 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.052 0.948 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.033 0.967 47 H 0.029 0.971 48 H 0.068 0.932 49 H 0.049 0.951 50 H 0.090 0.910 51 H 0.075 0.925 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.749 -14.155 11.096 19.584 hybrid contribution -0.205 1.120 0.067 1.141 sum -7.954 -13.035 11.162 18.915 Atomic orbital electron populations 1.21652 0.95161 1.00648 1.02517 1.21560 0.96567 0.94884 1.01697 1.20777 0.88491 0.96038 0.93313 0.89773 1.20555 0.97133 0.96709 0.97073 1.21094 0.93846 0.98664 0.98722 1.21122 0.94739 0.99421 0.98638 1.21131 0.99739 0.96277 0.96524 1.21111 0.94013 0.98887 0.99778 1.21022 0.94740 0.98439 0.98521 1.62592 1.54844 1.04574 1.02219 1.22184 1.00575 0.86725 0.97723 1.22108 0.95028 0.99697 0.89933 1.62218 1.55672 1.01844 1.03297 1.21661 0.90642 0.98105 0.90744 0.90957 1.22537 0.99611 1.00476 1.01728 1.19640 0.97914 0.90739 0.95850 1.21006 0.88935 0.94572 1.47843 0.90550 1.24989 0.94628 0.98573 0.95550 1.69909 1.05898 1.26772 1.52336 0.86920 0.80205 0.84572 0.78337 1.20636 1.21694 1.19372 1.22125 0.98631 0.89659 0.96725 1.22448 0.97405 0.97851 0.90143 0.93611 0.93326 0.91375 0.91788 0.91990 0.86109 0.86266 0.86346 0.86321 0.86507 0.93264 0.91287 0.90018 0.94777 0.93779 0.92700 0.92750 0.96695 0.97057 0.93166 0.95136 0.90986 0.92465 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.80 37.16 0.36 -0.98 16 2 C -0.11 -1.08 4.90 -26.73 -0.13 -1.21 16 3 C 0.12 1.42 2.04 -68.87 -0.14 1.28 16 4 H 0.08 0.95 7.76 -51.93 -0.40 0.54 16 5 C -0.11 -1.43 3.81 -104.62 -0.40 -1.83 16 6 C -0.10 -1.32 6.68 -39.59 -0.26 -1.58 16 7 C -0.12 -1.52 10.05 -39.58 -0.40 -1.91 16 8 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 9 C -0.12 -1.52 10.05 -39.58 -0.40 -1.92 16 10 C -0.11 -1.39 9.40 -39.58 -0.37 -1.76 16 11 N -0.52 -6.97 4.08 -227.88 -0.93 -7.91 16 12 C 0.06 0.86 5.40 -3.76 -0.02 0.84 16 13 C 0.06 1.05 4.64 -3.76 -0.02 1.03 16 14 N -0.51 -9.63 4.28 -226.49 -0.97 -10.59 16 15 C 0.10 1.91 2.26 -67.71 -0.15 1.76 16 16 H 0.07 1.48 7.94 -51.93 -0.41 1.06 16 17 C -0.18 -3.03 8.34 37.16 0.31 -2.72 16 18 C 0.00 -0.09 3.49 -27.88 -0.10 -0.19 16 19 C -0.49 -13.85 9.33 -34.44 -0.32 -14.17 16 20 H 0.08 2.40 7.99 -52.49 -0.42 1.98 16 21 C 0.06 1.83 5.47 -17.82 -0.10 1.73 16 22 N -0.91 -28.60 13.96 55.43 0.77 -27.83 16 23 Si 0.87 22.12 27.37 -169.99 -4.65 17.46 16 24 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.27 -6.55 6.70 56.52 0.38 -6.17 16 27 C 0.06 0.91 5.39 -3.77 -0.02 0.89 16 28 C 0.05 0.70 3.97 -3.76 -0.01 0.69 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.74 7.75 -51.93 -0.40 0.33 16 32 H 0.06 0.64 5.37 -51.93 -0.28 0.36 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.12 1.37 5.42 -52.49 -0.28 1.08 16 35 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 36 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 38 H 0.12 1.33 8.00 -52.49 -0.42 0.91 16 39 H 0.05 0.89 7.41 -51.93 -0.39 0.50 16 40 H 0.07 0.94 8.04 -51.93 -0.42 0.52 16 41 H 0.08 1.57 6.49 -51.93 -0.34 1.23 16 42 H 0.03 0.56 6.41 -51.93 -0.33 0.23 16 43 H 0.04 0.66 6.95 -51.93 -0.36 0.30 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.05 0.88 6.39 -51.93 -0.33 0.55 16 46 H 0.01 0.36 7.57 -51.93 -0.39 -0.03 16 47 H 0.01 0.27 5.70 -51.93 -0.30 -0.03 16 48 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 49 H 0.03 0.47 6.95 -51.93 -0.36 0.11 16 50 H 0.07 1.15 8.03 -51.93 -0.42 0.73 16 51 H 0.06 0.95 5.63 -51.93 -0.29 0.66 16 52 H 0.07 0.86 5.72 -51.93 -0.30 0.56 16 LS Contribution 382.20 15.07 5.76 5.76 Total: -1.00 -31.18 382.20 -11.54 -42.73 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -8.96 Total: 2.32 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: -2.57 Total: -21.94 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: -1.13 Total: -46.33 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.65 Total: 17.46 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.18 -11.54 -42.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559567911.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.398 kcal (2) G-P(sol) polarization free energy of solvation -31.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds