Wall clock time and date at job start Tue Mar 31 2020 11:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47259 * 2 1 4 4 H 1.08995 * 109.47004 * 54.99660 * 3 2 1 5 5 C 1.50695 * 109.47042 * 175.00265 * 3 2 1 6 6 C 1.38233 * 120.00368 * 45.41118 * 5 3 2 7 7 C 1.38232 * 120.00131 * 179.76893 * 6 5 3 8 8 C 1.38237 * 120.00260 * 0.50481 * 7 6 5 9 9 C 1.38242 * 119.99354 * 359.75295 * 8 7 6 10 10 C 1.38229 * 120.00385 * 359.97438 * 9 8 7 11 11 N 1.46897 * 109.46767 * 295.00266 * 3 2 1 12 12 C 1.46962 * 110.99669 * 166.16772 * 11 3 2 13 13 C 1.53052 * 109.36618 * 183.18681 * 12 11 3 14 14 N 1.46964 * 109.36147 * 301.59952 * 13 12 11 15 15 C 1.46902 * 110.99733 * 183.18839 * 14 13 12 16 16 H 1.09003 * 109.46811 * 190.85810 * 15 14 13 17 17 C 1.52999 * 109.47164 * 310.85775 * 15 14 13 18 18 C 1.52996 * 109.47321 * 70.85947 * 15 14 13 19 19 C 1.50706 * 109.47335 * 62.63323 * 18 15 14 20 20 H 1.07995 * 119.99366 * 5.30533 * 19 18 15 21 21 C 1.37874 * 120.00256 * 185.30454 * 19 18 15 22 22 N 1.31506 * 120.00191 * 179.97438 * 21 19 18 23 23 Si 1.86810 * 119.99823 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47232 * 89.99993 * 23 21 19 25 25 H 1.48502 * 109.46987 * 209.99967 * 23 21 19 26 26 H 1.48506 * 109.46805 * 329.99714 * 23 21 19 27 27 C 1.46949 * 110.88322 * 59.31856 * 14 13 12 28 28 C 1.46963 * 111.00070 * 289.96003 * 11 3 2 29 29 H 1.08994 * 109.47258 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46934 * 300.00075 * 1 2 3 31 31 H 1.09004 * 109.46788 * 59.99863 * 1 2 3 32 32 H 1.09004 * 109.46934 * 239.99925 * 2 1 3 33 33 H 1.09004 * 109.46788 * 120.00137 * 2 1 3 34 34 H 1.08002 * 119.99882 * 0.02562 * 6 5 3 35 35 H 1.08000 * 120.00200 * 180.23266 * 7 6 5 36 36 H 1.07993 * 120.00478 * 179.72357 * 8 7 6 37 37 H 1.08001 * 119.99306 * 179.97438 * 9 8 7 38 38 H 1.08000 * 120.00497 * 179.97438 * 10 9 8 39 39 H 1.08995 * 109.49421 * 63.21682 * 12 11 3 40 40 H 1.08997 * 109.50524 * 303.15818 * 12 11 3 41 41 H 1.08994 * 109.49264 * 181.62866 * 13 12 11 42 42 H 1.08999 * 109.48677 * 61.55782 * 13 12 11 43 43 H 1.08999 * 109.46872 * 300.00352 * 17 15 14 44 44 H 1.08997 * 109.47059 * 180.02562 * 17 15 14 45 45 H 1.09002 * 109.47106 * 59.99755 * 17 15 14 46 46 H 1.08998 * 109.47312 * 182.63950 * 18 15 14 47 47 H 1.09002 * 109.47322 * 302.63771 * 18 15 14 48 48 H 0.96999 * 120.00216 * 179.97438 * 22 21 19 49 49 H 1.08995 * 109.49260 * 60.64766 * 27 14 13 50 50 H 1.09005 * 109.48890 * 180.71344 * 27 14 13 51 51 H 1.09000 * 109.48791 * 296.78583 * 28 11 3 52 52 H 1.08994 * 109.48615 * 56.84776 * 28 11 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5420 1.4442 0.1238 6 6 4.2998 0.5802 -0.6443 7 6 5.6778 0.5852 -0.5343 8 6 6.2973 1.4469 0.3515 9 6 5.5391 2.3072 1.1236 10 6 4.1615 2.3061 1.0094 11 7 1.6514 2.0992 -1.2552 12 6 1.8274 3.5554 -1.1641 13 6 1.3382 4.2078 -2.4593 14 7 2.0912 3.6591 -3.5959 15 6 1.7026 4.3160 -4.8511 16 1 2.1251 3.7684 -5.6936 17 6 0.1771 4.3325 -4.9670 18 6 2.2303 5.7520 -4.8599 19 6 3.7365 5.7341 -4.8110 20 1 4.2672 4.7950 -4.8635 21 6 4.4368 6.9165 -4.6992 22 7 5.7510 6.9007 -4.6560 23 14 3.5186 8.5407 -4.6078 24 1 3.2292 8.8666 -3.1882 25 1 4.3535 9.6155 -5.2020 26 1 2.2431 8.4314 -5.3605 27 6 1.9153 2.2031 -3.6870 28 6 2.4045 1.5507 -2.3918 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8156 -0.0958 -1.3335 35 1 6.2701 -0.0872 -1.1371 36 1 7.3736 1.4477 0.4408 37 1 6.0231 2.9801 1.8159 38 1 3.5691 2.9779 1.6128 39 1 2.8826 3.7857 -1.0170 40 1 1.2506 3.9398 -0.3230 41 1 1.4945 5.2851 -2.4055 42 1 0.2764 4.0002 -2.5925 43 1 -0.1988 3.3094 -4.9606 44 1 -0.1112 4.8195 -5.8985 45 1 -0.2454 4.8800 -4.1244 46 1 1.9023 6.2541 -5.7701 47 1 1.8450 6.2861 -3.9914 48 1 6.2437 7.7326 -4.5778 49 1 0.8601 1.9727 -3.8341 50 1 2.4924 1.8189 -4.5281 51 1 3.4663 1.7582 -2.2586 52 1 2.2482 0.4734 -2.4456 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559567911.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:11 Heat of formation + Delta-G solvation = 19.405001 kcal Electronic energy + Delta-G solvation = -28240.714501 eV Core-core repulsion = 24818.188002 eV Total energy + Delta-G solvation = -3422.526499 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.41515 -39.76804 -37.82228 -35.25346 -34.17575 -32.48453 -31.97039 -31.67615 -31.18651 -29.57167 -27.66344 -25.60500 -25.03970 -24.31858 -23.38895 -22.85262 -21.72077 -20.80226 -19.94614 -18.76789 -17.70482 -17.44527 -16.70026 -16.36281 -16.33857 -15.82651 -15.65421 -15.45817 -15.25013 -15.13230 -14.69048 -14.50198 -14.32525 -14.25216 -13.95095 -13.82144 -13.51222 -13.34122 -13.12839 -12.83070 -12.81875 -12.63515 -12.57289 -12.38561 -12.21105 -11.99200 -11.90781 -11.77695 -11.67533 -11.65878 -11.44452 -11.37261 -11.32304 -10.98944 -10.66193 -9.79523 -9.61089 -9.26936 -8.81707 -8.16744 -6.14826 0.44013 0.51207 1.35638 1.37223 1.48403 2.41716 2.80584 3.05063 3.09830 3.25389 3.69103 3.90034 4.00886 4.07952 4.12437 4.15709 4.24166 4.31231 4.33221 4.41538 4.42397 4.52436 4.54324 4.57561 4.59442 4.61508 4.65081 4.75010 4.84288 4.87215 4.90639 5.01897 5.04570 5.09088 5.10657 5.13620 5.14470 5.17069 5.24141 5.27387 5.32698 5.36357 5.53761 5.55578 5.60869 5.62603 5.64899 5.75952 6.09040 6.12701 6.13284 6.39826 6.48169 6.56949 6.92163 7.45255 9.01033 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012147 B = 0.004642 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.583315 B = 6030.309458 C = 7413.780543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.103 4.103 3 C 0.124 3.876 4 H 0.091 0.909 5 C -0.121 4.121 6 C -0.112 4.112 7 C -0.136 4.136 8 C -0.133 4.133 9 C -0.135 4.135 10 C -0.123 4.123 11 N -0.508 5.508 12 C 0.064 3.936 13 C 0.064 3.936 14 N -0.538 5.538 15 C 0.099 3.901 16 H 0.058 0.942 17 C -0.171 4.171 18 C 0.000 4.000 19 C -0.483 4.483 20 H 0.030 0.970 21 C -0.002 4.002 22 N -0.959 5.959 23 Si 0.942 3.058 24 H -0.273 1.273 25 H -0.289 1.289 26 H -0.247 1.247 27 C 0.060 3.940 28 C 0.057 3.943 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.015 0.985 40 H 0.091 0.909 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.018 0.982 47 H 0.015 0.985 48 H 0.259 0.741 49 H 0.046 0.954 50 H 0.064 0.936 51 H 0.030 0.970 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.615 -14.759 11.785 21.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.141 4.141 3 C 0.016 3.984 4 H 0.109 0.891 5 C -0.122 4.122 6 C -0.131 4.131 7 C -0.153 4.153 8 C -0.151 4.151 9 C -0.153 4.153 10 C -0.142 4.142 11 N -0.231 5.231 12 C -0.065 4.065 13 C -0.064 4.064 14 N -0.262 5.262 15 C -0.009 4.009 16 H 0.076 0.924 17 C -0.230 4.230 18 C -0.038 4.038 19 C -0.521 4.521 20 H 0.048 0.952 21 C -0.197 4.197 22 N -0.602 5.602 23 Si 0.767 3.233 24 H -0.198 1.198 25 H -0.215 1.215 26 H -0.171 1.171 27 C -0.068 4.068 28 C -0.071 4.071 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.145 0.855 39 H 0.034 0.966 40 H 0.109 0.891 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.036 0.964 47 H 0.033 0.967 48 H 0.068 0.932 49 H 0.064 0.936 50 H 0.083 0.917 51 H 0.049 0.951 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.515 -14.652 11.783 21.542 hybrid contribution 0.745 1.178 -0.145 1.402 sum -9.770 -13.474 11.637 20.308 Atomic orbital electron populations 1.21603 0.94446 1.01348 1.02083 1.21527 0.97024 0.93413 1.02154 1.20873 0.87891 0.97165 0.92443 0.89070 1.20725 0.97810 0.96656 0.97049 1.21293 0.94043 0.98905 0.98842 1.21427 0.95205 0.99818 0.98900 1.21428 1.00728 0.96357 0.96614 1.21396 0.94340 0.99303 1.00261 1.21277 0.95108 0.98800 0.99003 1.62634 1.54256 1.03351 1.02845 1.22075 0.98728 0.88133 0.97547 1.22054 0.95801 0.98386 0.90133 1.62108 1.57060 1.03643 1.03391 1.21463 0.93088 0.95413 0.90960 0.92366 1.22369 0.96332 1.01920 1.02386 1.19578 0.94516 0.93868 0.95840 1.21223 0.91561 0.92710 1.46652 0.95151 1.25910 0.95402 1.02919 0.95444 1.70085 1.07944 1.27870 1.54316 0.85785 0.79476 0.79191 0.78881 1.19810 1.21543 1.17090 1.22134 0.99414 0.87812 0.97444 1.22367 0.95805 0.99090 0.89795 0.92400 0.92929 0.92572 0.91763 0.91114 0.85047 0.84798 0.84918 0.85014 0.85494 0.96635 0.89124 0.92397 0.93044 0.91898 0.91836 0.92241 0.96369 0.96679 0.93184 0.93608 0.91707 0.95140 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.80 71.98 0.71 -1.48 16 2 C -0.10 -1.79 4.90 30.60 0.15 -1.64 16 3 C 0.12 2.67 2.04 44.17 0.09 2.76 16 4 H 0.09 1.86 7.76 -2.39 -0.02 1.84 16 5 C -0.12 -2.99 3.81 -19.87 -0.08 -3.06 16 6 C -0.11 -2.77 6.68 22.27 0.15 -2.63 16 7 C -0.14 -3.39 10.05 22.27 0.22 -3.17 16 8 C -0.13 -3.37 10.05 22.27 0.22 -3.15 16 9 C -0.14 -3.45 10.05 22.27 0.22 -3.23 16 10 C -0.12 -3.15 9.40 22.27 0.21 -2.94 16 11 N -0.51 -12.82 4.08 -874.87 -3.57 -16.40 16 12 C 0.06 1.91 5.40 86.31 0.47 2.37 16 13 C 0.06 2.17 4.64 86.31 0.40 2.57 16 14 N -0.54 -20.35 4.28 -870.48 -3.72 -24.07 16 15 C 0.10 3.87 2.26 44.91 0.10 3.97 16 16 H 0.06 2.40 7.94 -2.39 -0.02 2.38 16 17 C -0.17 -5.16 8.34 71.98 0.60 -4.56 16 18 C 0.00 -0.02 3.49 29.85 0.10 0.08 16 19 C -0.48 -28.38 9.33 25.60 0.24 -28.14 16 20 H 0.03 2.01 7.99 -2.91 -0.02 1.99 16 21 C 0.00 -0.13 5.47 84.66 0.46 0.33 16 22 N -0.96 -62.43 13.96 21.44 0.30 -62.13 16 23 Si 0.94 45.78 27.37 68.60 1.88 47.66 16 24 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 25 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 26 H -0.25 -11.07 6.70 99.48 0.67 -10.41 16 27 C 0.06 1.86 5.39 86.31 0.46 2.33 16 28 C 0.06 1.58 3.97 86.31 0.34 1.92 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.06 1.04 7.75 -2.38 -0.02 1.03 16 32 H 0.06 1.11 5.37 -2.38 -0.01 1.10 16 33 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.13 2.84 5.42 -2.91 -0.02 2.83 16 35 H 0.13 2.81 8.06 -2.91 -0.02 2.79 16 36 H 0.13 2.83 8.06 -2.91 -0.02 2.81 16 37 H 0.13 2.87 8.06 -2.91 -0.02 2.84 16 38 H 0.13 2.85 8.00 -2.91 -0.02 2.82 16 39 H 0.02 0.57 7.41 -2.39 -0.02 0.55 16 40 H 0.09 2.30 8.04 -2.39 -0.02 2.28 16 41 H 0.06 2.20 6.49 -2.39 -0.02 2.18 16 42 H 0.05 1.55 6.41 -2.39 -0.02 1.53 16 43 H 0.06 1.67 6.95 -2.39 -0.02 1.65 16 44 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.06 1.74 6.39 -2.39 -0.02 1.72 16 46 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 47 H 0.01 0.70 5.70 -2.39 -0.01 0.69 16 48 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 49 H 0.05 1.29 6.95 -2.39 -0.02 1.27 16 50 H 0.06 2.07 8.03 -2.38 -0.02 2.05 16 51 H 0.03 1.02 5.63 -2.39 -0.01 1.01 16 52 H 0.10 2.14 5.72 -2.39 -0.01 2.12 16 Total: -1.00 -69.31 382.20 0.80 -68.51 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 0.84 Total: 24.11 kcal Atomic # 6 Polarization: -42.75 SS G_CDS: 5.08 Total: -37.67 kcal Atomic # 7 Polarization: -95.60 SS G_CDS: -7.00 Total: -102.60 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.88 Total: 47.66 kcal Total: -69.31 0.80 -68.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559567911.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.912 kcal (2) G-P(sol) polarization free energy of solvation -69.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds