Wall clock time and date at job start Tue Mar 31 2020 11:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46891 * 2 1 4 4 C 1.52999 * 109.47286 * 239.99874 * 2 1 3 5 5 C 1.52998 * 109.47042 * 119.99821 * 2 1 3 6 6 N 1.46894 * 109.47454 * 78.11985 * 5 2 1 7 7 C 1.46903 * 111.00102 * 83.02654 * 6 5 2 8 8 C 1.50706 * 109.46922 * 71.26737 * 7 6 5 9 9 H 1.07999 * 119.99624 * 5.05040 * 8 7 6 10 10 C 1.37878 * 119.99982 * 185.05117 * 8 7 6 11 11 N 1.31512 * 119.99946 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 119.99820 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47104 * 90.00506 * 12 10 8 14 14 H 1.48501 * 109.46705 * 209.99668 * 12 10 8 15 15 H 1.48496 * 109.47467 * 330.00001 * 12 10 8 16 16 C 1.46901 * 111.00159 * 319.07976 * 6 5 2 17 17 C 1.50709 * 109.46657 * 289.37106 * 16 6 5 18 18 C 1.37848 * 119.79139 * 355.42384 * 17 16 6 19 19 C 1.38268 * 119.95378 * 180.02562 * 18 17 16 20 20 C 1.38106 * 119.88697 * 0.15395 * 19 18 17 21 21 C 1.38569 * 120.48466 * 359.90325 * 20 19 18 22 22 C 1.38416 * 119.86393 * 359.57242 * 21 20 19 23 23 N 1.39403 * 122.94782 * 180.49418 * 22 21 20 24 24 C 1.46433 * 113.19815 * 340.13827 * 23 22 21 25 25 C 1.53380 * 108.66103 * 53.19911 * 24 23 22 26 26 C 1.50799 * 118.12835 * 179.63886 * 21 20 19 27 27 H 1.09002 * 109.47348 * 296.68083 * 1 2 3 28 28 H 1.09000 * 109.46804 * 56.68242 * 1 2 3 29 29 H 1.09004 * 109.46941 * 176.67816 * 1 2 3 30 30 H 1.09006 * 109.47144 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47532 * 299.99548 * 3 2 1 32 32 H 1.09004 * 109.47547 * 60.00074 * 3 2 1 33 33 H 1.09006 * 109.46749 * 306.21135 * 4 2 1 34 34 H 1.09001 * 109.47079 * 66.21327 * 4 2 1 35 35 H 1.08996 * 109.47046 * 186.21575 * 4 2 1 36 36 H 1.09004 * 109.46957 * 318.11913 * 5 2 1 37 37 H 1.08998 * 109.47291 * 198.12197 * 5 2 1 38 38 H 1.08997 * 109.47781 * 191.26746 * 7 6 5 39 39 H 1.09002 * 109.47033 * 311.27224 * 7 6 5 40 40 H 0.97003 * 120.00194 * 179.97438 * 11 10 8 41 41 H 1.08997 * 109.47605 * 169.36839 * 16 6 5 42 42 H 1.08998 * 109.47340 * 49.36557 * 16 6 5 43 43 H 1.07993 * 120.02444 * 0.02562 * 18 17 16 44 44 H 1.07999 * 120.05794 * 180.12939 * 19 18 17 45 45 H 1.07994 * 119.74990 * 179.97438 * 20 19 18 46 46 H 1.00900 * 110.77104 * 105.55554 * 23 22 21 47 47 H 1.09005 * 109.60094 * 293.45087 * 24 23 22 48 48 H 1.08997 * 109.60749 * 172.95339 * 24 23 22 49 49 H 1.09007 * 109.76556 * 172.18218 * 25 24 23 50 50 H 1.08992 * 109.81095 * 51.42703 * 25 24 23 51 51 H 1.08996 * 109.44412 * 284.47951 * 26 21 20 52 52 H 1.09000 * 109.44042 * 44.36146 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 1.9344 -2.1733 1.0538 7 6 3.0895 -2.6893 0.3071 8 6 4.3142 -2.6476 1.1844 9 1 4.2270 -2.3524 2.2196 10 6 5.5458 -2.9862 0.6654 11 7 6.6146 -2.9493 1.4308 12 14 5.6963 -3.4975 -1.1250 13 1 5.9503 -2.2979 -1.9626 14 1 6.8235 -4.4527 -1.2738 15 1 4.4350 -4.1482 -1.5617 16 6 0.6751 -2.5241 0.3838 17 6 -0.4761 -2.3050 1.3315 18 6 -0.2284 -1.9318 2.6352 19 6 -1.2820 -1.7303 3.5076 20 6 -2.5803 -1.9067 3.0711 21 6 -2.8370 -2.2829 1.7623 22 6 -1.7864 -2.4753 0.8819 23 7 -1.9710 -2.8439 -0.4498 24 6 -3.2818 -3.4445 -0.7057 25 6 -4.3671 -2.4953 -0.1827 26 6 -4.2740 -2.4686 1.3447 27 1 -0.3634 0.4614 0.9182 28 1 -0.3633 0.5645 -0.8588 29 1 -0.3633 -1.0260 -0.0596 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.5887 -1.7118 -1.3065 34 1 1.7704 -0.1473 -2.1357 35 1 3.1243 -0.8186 -1.1953 36 1 1.4397 -0.4258 2.1098 37 1 3.0819 -0.4529 1.4238 38 1 2.8954 -3.7178 0.0028 39 1 3.2549 -2.0738 -0.5772 40 1 7.4811 -3.1879 1.0658 41 1 0.7033 -3.5712 0.0824 42 1 0.5450 -1.8958 -0.4973 43 1 0.7878 -1.7969 2.9749 44 1 -1.0900 -1.4359 4.5288 45 1 -3.4016 -1.7492 3.7545 46 1 -1.8062 -2.0605 -1.0640 47 1 -3.3527 -4.4015 -0.1886 48 1 -3.4125 -3.5945 -1.7773 49 1 -5.3500 -2.8565 -0.4858 50 1 -4.2041 -1.4934 -0.5795 51 1 -4.6504 -3.4088 1.7477 52 1 -4.8733 -1.6437 1.7302 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001560657933.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:09 Heat of formation + Delta-G solvation = 89.206897 kcal Electronic energy + Delta-G solvation = -28884.229830 eV Core-core repulsion = 25464.730168 eV Total energy + Delta-G solvation = -3419.499662 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.98490 -39.14936 -36.38037 -34.05908 -33.65235 -32.18521 -30.28702 -30.23235 -27.91789 -27.57078 -26.67671 -25.98146 -24.64850 -23.40300 -22.99280 -20.90604 -20.29680 -19.45524 -18.53806 -17.17609 -16.78125 -15.93374 -15.59812 -15.48157 -14.84839 -14.59105 -14.54926 -14.08870 -13.85997 -13.71178 -13.53920 -13.20147 -13.04048 -12.86450 -12.67337 -12.34828 -12.20158 -12.04700 -11.78175 -11.54643 -11.32574 -11.29720 -11.22434 -11.08661 -10.92673 -10.81575 -10.65893 -10.56138 -10.42774 -10.18885 -9.82150 -9.74587 -9.69013 -9.40815 -9.17507 -8.49744 -8.19010 -7.73161 -7.04759 -5.99372 -3.94103 1.60613 1.65852 3.29631 3.38740 3.40905 3.95239 4.02700 4.46332 4.61559 4.64828 4.71712 4.84019 5.08992 5.17989 5.21723 5.23078 5.31598 5.33747 5.37385 5.44971 5.49691 5.57392 5.60689 5.66765 5.83431 5.85459 5.86424 5.91233 5.95397 6.02703 6.05928 6.10477 6.11194 6.19581 6.23541 6.32815 6.36951 6.42785 6.51865 6.56203 6.69005 6.72500 6.78085 6.84334 6.94883 7.02056 7.09696 7.11922 7.20629 7.51260 7.73007 8.02861 8.15655 8.75288 9.11810 9.63705 11.14274 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016528 B = 0.004209 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.728019 B = 6650.763578 C = 6717.441287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.095 4.095 3 C -0.135 4.135 4 C -0.169 4.169 5 C 0.062 3.938 6 N -0.519 5.519 7 C 0.134 3.866 8 C -0.501 4.501 9 H 0.079 0.921 10 C 0.067 3.933 11 N -0.903 5.903 12 Si 0.869 3.131 13 H -0.278 1.278 14 H -0.287 1.287 15 H -0.267 1.267 16 C 0.057 3.943 17 C -0.060 4.060 18 C -0.090 4.090 19 C -0.137 4.137 20 C -0.119 4.119 21 C -0.130 4.130 22 C 0.100 3.900 23 N -0.635 5.635 24 C 0.060 3.940 25 C -0.158 4.158 26 C -0.074 4.074 27 H 0.049 0.951 28 H 0.038 0.962 29 H 0.098 0.902 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.041 0.959 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.021 0.979 39 H 0.021 0.979 40 H 0.262 0.738 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.147 0.853 44 H 0.116 0.884 45 H 0.111 0.889 46 H 0.350 0.650 47 H 0.079 0.921 48 H 0.080 0.920 49 H 0.072 0.928 50 H 0.064 0.936 51 H 0.071 0.929 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.388 4.700 -3.667 22.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.097 4.097 3 C -0.193 4.193 4 C -0.225 4.225 5 C -0.067 4.067 6 N -0.241 5.241 7 C 0.008 3.992 8 C -0.539 4.539 9 H 0.097 0.903 10 C -0.134 4.134 11 N -0.543 5.543 12 Si 0.697 3.303 13 H -0.204 1.204 14 H -0.213 1.213 15 H -0.191 1.191 16 C -0.070 4.070 17 C -0.062 4.062 18 C -0.109 4.109 19 C -0.156 4.156 20 C -0.137 4.137 21 C -0.133 4.133 22 C 0.002 3.998 23 N -0.264 5.264 24 C -0.069 4.069 25 C -0.197 4.197 26 C -0.111 4.111 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.116 0.884 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.039 0.961 39 H 0.038 0.962 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.164 0.836 44 H 0.134 0.866 45 H 0.129 0.871 46 H 0.177 0.823 47 H 0.097 0.903 48 H 0.098 0.902 49 H 0.090 0.910 50 H 0.082 0.918 51 H 0.090 0.910 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.875 3.822 -3.204 21.462 hybrid contribution -0.325 0.797 -1.556 1.778 sum -21.199 4.619 -4.760 22.213 Atomic orbital electron populations 1.23019 0.95682 1.04253 1.00639 1.21118 0.95178 0.95957 0.97442 1.21804 1.01297 0.95512 1.00678 1.22768 1.02776 1.00633 0.96358 1.22389 1.02257 0.87327 0.94706 1.62056 1.01257 1.11293 1.49470 1.20840 0.89025 0.94914 0.94385 1.21061 0.89439 1.44645 0.98779 0.90328 1.24872 0.95822 0.95486 0.97171 1.69894 0.98947 1.49646 1.35798 0.86956 0.78051 0.78897 0.86430 1.20393 1.21346 1.19129 1.21978 0.88401 1.01626 0.94995 1.19812 0.92336 0.98915 0.95146 1.21307 1.00296 0.96774 0.92482 1.21099 0.92689 1.02134 0.99642 1.20818 0.96766 1.01368 0.94779 1.19702 0.94287 1.04251 0.95042 1.18169 0.92301 0.99808 0.89497 1.57097 1.30673 1.34656 1.03954 1.22064 0.85841 0.97822 1.01182 1.22258 1.00444 1.00619 0.96379 1.20445 0.93189 1.02024 0.95456 0.93142 0.94256 0.88398 0.92374 0.93613 0.93077 0.90746 0.93982 0.90420 0.91776 0.89519 0.96129 0.96178 0.92840 0.90525 0.89572 0.83561 0.86573 0.87060 0.82299 0.90286 0.90195 0.90974 0.91765 0.91018 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.47 6.94 37.16 0.26 -2.21 16 2 C -0.10 -1.47 0.77 -154.51 -0.12 -1.59 16 3 C -0.14 -1.93 8.39 37.16 0.31 -1.61 16 4 C -0.17 -2.76 6.54 37.16 0.24 -2.52 16 5 C 0.06 1.12 4.24 -3.83 -0.02 1.10 16 6 N -0.52 -10.28 3.66 -237.51 -0.87 -11.15 16 7 C 0.13 3.11 3.18 -4.97 -0.02 3.10 16 8 C -0.50 -13.90 8.81 -34.44 -0.30 -14.20 16 9 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 10 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 11 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 12 Si 0.87 21.31 27.37 -169.99 -4.65 16.65 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.27 -6.29 6.69 56.52 0.38 -5.92 16 16 C 0.06 0.97 3.39 -4.97 -0.02 0.95 16 17 C -0.06 -0.92 3.52 -104.26 -0.37 -1.29 16 18 C -0.09 -1.42 7.99 -39.71 -0.32 -1.74 16 19 C -0.14 -1.87 10.05 -39.62 -0.40 -2.27 16 20 C -0.12 -1.49 9.63 -39.51 -0.38 -1.87 16 21 C -0.13 -1.62 5.74 -104.39 -0.60 -2.22 16 22 C 0.10 1.36 5.42 -83.85 -0.45 0.90 16 23 N -0.64 -7.49 5.67 -58.51 -0.33 -7.82 16 24 C 0.06 0.56 6.61 -3.88 -0.03 0.53 16 25 C -0.16 -1.31 6.19 -26.51 -0.16 -1.47 16 26 C -0.07 -0.71 5.81 -27.81 -0.16 -0.87 16 27 H 0.05 0.71 8.08 -51.93 -0.42 0.29 16 28 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.10 1.33 0.92 -51.93 -0.05 1.28 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 1.24 4.05 -51.93 -0.21 1.03 16 34 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 1.46 6.08 -51.93 -0.32 1.15 16 36 H 0.06 1.10 5.49 -51.93 -0.28 0.81 16 37 H 0.09 1.82 6.92 -51.93 -0.36 1.46 16 38 H 0.02 0.50 7.17 -51.93 -0.37 0.13 16 39 H 0.02 0.47 2.69 -51.93 -0.14 0.33 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.08 1.42 7.77 -51.93 -0.40 1.01 16 42 H 0.09 1.36 2.21 -51.93 -0.11 1.24 16 43 H 0.15 2.54 5.50 -52.49 -0.29 2.25 16 44 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 45 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 46 H 0.35 3.77 7.92 -39.29 -0.31 3.46 16 47 H 0.08 0.80 8.11 -51.93 -0.42 0.38 16 48 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 50 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 52 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 367.05 15.07 5.53 5.53 Total: -1.00 -29.79 367.05 -10.51 -40.30 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -8.34 Total: 8.73 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: -2.62 Total: -25.45 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: -0.43 Total: -45.77 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.65 Total: 16.65 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.79 -10.51 -40.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560657933.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.511 kcal (2) G-P(sol) polarization free energy of solvation -29.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds