Wall clock time and date at job start Tue Mar 31 2020 11:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46891 * 2 1 4 4 C 1.52999 * 109.47286 * 239.99874 * 2 1 3 5 5 C 1.52998 * 109.47042 * 119.99821 * 2 1 3 6 6 N 1.46894 * 109.47454 * 78.11985 * 5 2 1 7 7 C 1.46903 * 111.00102 * 83.02654 * 6 5 2 8 8 C 1.50706 * 109.46922 * 71.26737 * 7 6 5 9 9 H 1.07999 * 119.99624 * 5.05040 * 8 7 6 10 10 C 1.37878 * 119.99982 * 185.05117 * 8 7 6 11 11 N 1.31512 * 119.99946 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 119.99820 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47104 * 90.00506 * 12 10 8 14 14 H 1.48501 * 109.46705 * 209.99668 * 12 10 8 15 15 H 1.48496 * 109.47467 * 330.00001 * 12 10 8 16 16 C 1.46901 * 111.00159 * 319.07976 * 6 5 2 17 17 C 1.50709 * 109.46657 * 289.37106 * 16 6 5 18 18 C 1.37848 * 119.79139 * 355.42384 * 17 16 6 19 19 C 1.38268 * 119.95378 * 180.02562 * 18 17 16 20 20 C 1.38106 * 119.88697 * 0.15395 * 19 18 17 21 21 C 1.38569 * 120.48466 * 359.90325 * 20 19 18 22 22 C 1.38416 * 119.86393 * 359.57242 * 21 20 19 23 23 N 1.39403 * 122.94782 * 180.49418 * 22 21 20 24 24 C 1.46433 * 113.19815 * 340.13827 * 23 22 21 25 25 C 1.53380 * 108.66103 * 53.19911 * 24 23 22 26 26 C 1.50799 * 118.12835 * 179.63886 * 21 20 19 27 27 H 1.09002 * 109.47348 * 296.68083 * 1 2 3 28 28 H 1.09000 * 109.46804 * 56.68242 * 1 2 3 29 29 H 1.09004 * 109.46941 * 176.67816 * 1 2 3 30 30 H 1.09006 * 109.47144 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47532 * 299.99548 * 3 2 1 32 32 H 1.09004 * 109.47547 * 60.00074 * 3 2 1 33 33 H 1.09006 * 109.46749 * 306.21135 * 4 2 1 34 34 H 1.09001 * 109.47079 * 66.21327 * 4 2 1 35 35 H 1.08996 * 109.47046 * 186.21575 * 4 2 1 36 36 H 1.09004 * 109.46957 * 318.11913 * 5 2 1 37 37 H 1.08998 * 109.47291 * 198.12197 * 5 2 1 38 38 H 1.08997 * 109.47781 * 191.26746 * 7 6 5 39 39 H 1.09002 * 109.47033 * 311.27224 * 7 6 5 40 40 H 0.97003 * 120.00194 * 179.97438 * 11 10 8 41 41 H 1.08997 * 109.47605 * 169.36839 * 16 6 5 42 42 H 1.08998 * 109.47340 * 49.36557 * 16 6 5 43 43 H 1.07993 * 120.02444 * 0.02562 * 18 17 16 44 44 H 1.07999 * 120.05794 * 180.12939 * 19 18 17 45 45 H 1.07994 * 119.74990 * 179.97438 * 20 19 18 46 46 H 1.00900 * 110.77104 * 105.55554 * 23 22 21 47 47 H 1.09005 * 109.60094 * 293.45087 * 24 23 22 48 48 H 1.08997 * 109.60749 * 172.95339 * 24 23 22 49 49 H 1.09007 * 109.76556 * 172.18218 * 25 24 23 50 50 H 1.08992 * 109.81095 * 51.42703 * 25 24 23 51 51 H 1.08996 * 109.44412 * 284.47951 * 26 21 20 52 52 H 1.09000 * 109.44042 * 44.36146 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 1.9344 -2.1733 1.0538 7 6 3.0895 -2.6893 0.3071 8 6 4.3142 -2.6476 1.1844 9 1 4.2270 -2.3524 2.2196 10 6 5.5458 -2.9862 0.6654 11 7 6.6146 -2.9493 1.4308 12 14 5.6963 -3.4975 -1.1250 13 1 5.9503 -2.2979 -1.9626 14 1 6.8235 -4.4527 -1.2738 15 1 4.4350 -4.1482 -1.5617 16 6 0.6751 -2.5241 0.3838 17 6 -0.4761 -2.3050 1.3315 18 6 -0.2284 -1.9318 2.6352 19 6 -1.2820 -1.7303 3.5076 20 6 -2.5803 -1.9067 3.0711 21 6 -2.8370 -2.2829 1.7623 22 6 -1.7864 -2.4753 0.8819 23 7 -1.9710 -2.8439 -0.4498 24 6 -3.2818 -3.4445 -0.7057 25 6 -4.3671 -2.4953 -0.1827 26 6 -4.2740 -2.4686 1.3447 27 1 -0.3634 0.4614 0.9182 28 1 -0.3633 0.5645 -0.8588 29 1 -0.3633 -1.0260 -0.0596 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.5887 -1.7118 -1.3065 34 1 1.7704 -0.1473 -2.1357 35 1 3.1243 -0.8186 -1.1953 36 1 1.4397 -0.4258 2.1098 37 1 3.0819 -0.4529 1.4238 38 1 2.8954 -3.7178 0.0028 39 1 3.2549 -2.0738 -0.5772 40 1 7.4811 -3.1879 1.0658 41 1 0.7033 -3.5712 0.0824 42 1 0.5450 -1.8958 -0.4973 43 1 0.7878 -1.7969 2.9749 44 1 -1.0900 -1.4359 4.5288 45 1 -3.4016 -1.7492 3.7545 46 1 -1.8062 -2.0605 -1.0640 47 1 -3.3527 -4.4015 -0.1886 48 1 -3.4125 -3.5945 -1.7773 49 1 -5.3500 -2.8565 -0.4858 50 1 -4.2041 -1.4934 -0.5795 51 1 -4.6504 -3.4088 1.7477 52 1 -4.8733 -1.6437 1.7302 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001560657933.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:07 Heat of formation + Delta-G solvation = 71.848119 kcal Electronic energy + Delta-G solvation = -28884.982564 eV Core-core repulsion = 25464.730168 eV Total energy + Delta-G solvation = -3420.252395 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.16315 -40.31422 -37.32432 -35.56530 -34.92298 -33.99081 -31.48792 -31.20840 -29.47053 -28.95128 -28.02749 -27.25567 -25.48457 -25.02547 -23.88052 -22.42031 -21.51935 -20.49034 -19.84817 -18.90293 -18.20252 -16.93275 -16.86190 -16.68835 -16.28570 -16.04339 -15.53732 -15.44117 -15.24474 -14.83549 -14.67497 -14.49746 -14.37066 -14.13225 -13.80109 -13.66560 -13.30949 -13.12371 -13.00291 -12.89589 -12.74464 -12.61913 -12.52029 -12.32546 -12.22937 -12.07204 -12.00180 -11.81755 -11.73565 -11.56688 -11.44932 -11.41305 -11.13777 -11.00319 -10.68486 -10.31316 -9.27304 -8.74087 -8.56939 -8.23666 -6.23407 0.55994 0.58673 1.33338 1.36392 1.47051 2.36809 2.90240 3.10804 3.15653 3.30678 3.89027 3.90086 3.92046 3.95289 4.03798 4.06838 4.09066 4.34322 4.48819 4.51938 4.54689 4.58739 4.62377 4.65617 4.71130 4.74610 4.80902 4.83236 4.86681 4.90068 4.93399 4.95315 5.02795 5.05498 5.07534 5.16191 5.17710 5.20310 5.30276 5.32209 5.36868 5.38574 5.48655 5.52634 5.59694 5.65467 5.68601 5.82038 6.05626 6.15151 6.29647 6.51404 6.55275 6.78991 6.83025 7.38797 8.93760 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016528 B = 0.004209 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.728019 B = 6650.763578 C = 6717.441287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.092 4.092 3 C -0.132 4.132 4 C -0.168 4.168 5 C 0.068 3.932 6 N -0.535 5.535 7 C 0.145 3.855 8 C -0.504 4.504 9 H 0.031 0.969 10 C 0.007 3.993 11 N -0.953 5.953 12 Si 0.939 3.061 13 H -0.263 1.263 14 H -0.286 1.286 15 H -0.249 1.249 16 C 0.067 3.933 17 C -0.076 4.076 18 C -0.111 4.111 19 C -0.145 4.145 20 C -0.115 4.115 21 C -0.132 4.132 22 C 0.103 3.897 23 N -0.646 5.646 24 C 0.057 3.943 25 C -0.151 4.151 26 C -0.075 4.075 27 H 0.046 0.954 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.040 0.960 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.048 0.952 36 H 0.070 0.930 37 H 0.046 0.954 38 H 0.011 0.989 39 H 0.037 0.963 40 H 0.264 0.736 41 H 0.057 0.943 42 H 0.105 0.895 43 H 0.117 0.883 44 H 0.128 0.872 45 H 0.138 0.862 46 H 0.357 0.643 47 H 0.069 0.931 48 H 0.100 0.900 49 H 0.094 0.906 50 H 0.065 0.935 51 H 0.079 0.921 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.238 5.255 -6.162 26.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.093 4.093 3 C -0.190 4.190 4 C -0.224 4.224 5 C -0.060 4.060 6 N -0.257 5.257 7 C 0.018 3.982 8 C -0.542 4.542 9 H 0.049 0.951 10 C -0.189 4.189 11 N -0.594 5.594 12 Si 0.763 3.237 13 H -0.188 1.188 14 H -0.211 1.211 15 H -0.173 1.173 16 C -0.060 4.060 17 C -0.079 4.079 18 C -0.130 4.130 19 C -0.163 4.163 20 C -0.134 4.134 21 C -0.135 4.135 22 C 0.005 3.995 23 N -0.275 5.275 24 C -0.071 4.071 25 C -0.190 4.190 26 C -0.111 4.111 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.117 0.883 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.029 0.971 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.122 0.878 43 H 0.135 0.865 44 H 0.146 0.854 45 H 0.156 0.844 46 H 0.185 0.815 47 H 0.088 0.912 48 H 0.118 0.882 49 H 0.113 0.887 50 H 0.084 0.916 51 H 0.097 0.903 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -24.759 4.387 -5.704 25.784 hybrid contribution 0.813 0.629 -0.638 1.210 sum -23.946 5.016 -6.342 25.275 Atomic orbital electron populations 1.22895 0.93626 1.04712 1.01470 1.21058 0.96713 0.96205 0.95365 1.21778 1.00216 0.94849 1.02183 1.22694 1.00696 1.01139 0.97872 1.22257 1.00032 0.86827 0.96858 1.61895 1.01493 1.12459 1.49836 1.20620 0.88566 0.94799 0.94179 1.21295 0.91747 1.43796 0.97378 0.95101 1.25776 0.95233 0.95537 1.02359 1.70061 0.99678 1.51383 1.38317 0.85831 0.78614 0.79022 0.80256 1.18828 1.21145 1.17311 1.21932 0.87429 1.00666 0.95959 1.19670 0.92738 1.00756 0.94710 1.21135 0.99623 0.98791 0.93409 1.21245 0.92890 1.02255 0.99955 1.21148 0.96784 1.00064 0.95383 1.20111 0.95799 1.02840 0.94756 1.18208 0.91563 0.99106 0.90648 1.57047 1.32490 1.34909 1.03076 1.22176 0.85028 0.97461 1.02471 1.22216 1.01079 1.00424 0.95234 1.20538 0.91041 1.02983 0.96586 0.93448 0.91992 0.88313 0.94130 0.91306 0.92343 0.91093 0.91075 0.93342 0.91151 0.93542 0.97090 0.94584 0.92719 0.92452 0.87836 0.86464 0.85415 0.84406 0.81499 0.91228 0.88180 0.88703 0.91578 0.90276 0.89542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.32 6.94 71.98 0.50 -3.82 16 2 C -0.09 -2.78 0.77 -52.18 -0.04 -2.82 16 3 C -0.13 -3.64 8.39 71.98 0.60 -3.03 16 4 C -0.17 -5.26 6.54 71.98 0.47 -4.79 16 5 C 0.07 2.61 4.24 86.30 0.37 2.98 16 6 N -0.53 -22.23 3.66 -905.35 -3.31 -25.55 16 7 C 0.14 6.97 3.18 85.56 0.27 7.24 16 8 C -0.50 -29.69 8.81 25.60 0.23 -29.46 16 9 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16 10 C 0.01 0.43 5.47 84.66 0.46 0.89 16 11 N -0.95 -60.92 13.96 21.45 0.30 -60.62 16 12 Si 0.94 44.73 27.37 68.60 1.88 46.61 16 13 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 14 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 15 H -0.25 -11.11 6.69 99.48 0.67 -10.44 16 16 C 0.07 2.28 3.39 85.56 0.29 2.57 16 17 C -0.08 -2.35 3.52 -19.63 -0.07 -2.41 16 18 C -0.11 -3.58 7.99 22.18 0.18 -3.40 16 19 C -0.14 -3.87 10.05 22.25 0.22 -3.65 16 20 C -0.12 -2.61 9.63 22.32 0.21 -2.40 16 21 C -0.13 -2.94 5.74 -19.71 -0.11 -3.05 16 22 C 0.10 2.61 5.42 38.30 0.21 2.82 16 23 N -0.65 -13.64 5.67 -339.01 -1.92 -15.57 16 24 C 0.06 0.88 6.61 86.52 0.57 1.45 16 25 C -0.15 -1.86 6.19 30.74 0.19 -1.67 16 26 C -0.07 -1.13 5.81 29.90 0.17 -0.95 16 27 H 0.05 1.24 8.08 -2.39 -0.02 1.22 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.10 2.50 0.92 -2.38 0.00 2.50 16 30 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.07 2.26 4.05 -2.38 -0.01 2.25 16 34 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.05 1.81 6.08 -2.39 -0.01 1.79 16 36 H 0.07 2.57 5.49 -2.38 -0.01 2.56 16 37 H 0.05 2.11 6.92 -2.39 -0.02 2.10 16 38 H 0.01 0.55 7.17 -2.39 -0.02 0.53 16 39 H 0.04 1.67 2.69 -2.39 -0.01 1.66 16 40 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 41 H 0.06 2.16 7.77 -2.39 -0.02 2.14 16 42 H 0.11 3.15 2.21 -2.39 -0.01 3.15 16 43 H 0.12 4.40 5.50 -2.91 -0.02 4.39 16 44 H 0.13 2.99 8.06 -2.91 -0.02 2.96 16 45 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 46 H 0.36 6.62 7.92 -89.69 -0.71 5.91 16 47 H 0.07 1.21 8.11 -2.38 -0.02 1.20 16 48 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 50 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 51 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 52 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -68.90 367.05 1.85 -67.05 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: 0.18 Total: 31.58 kcal Atomic # 6 Polarization: -48.24 SS G_CDS: 4.73 Total: -43.51 kcal Atomic # 7 Polarization: -96.79 SS G_CDS: -4.93 Total: -101.73 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.88 Total: 46.61 kcal Total: -68.90 1.85 -67.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560657933.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.900 kcal (2) G-P(sol) polarization free energy of solvation -68.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds