Wall clock time and date at job start Tue Mar 31 2020 11:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46979 * 2 1 4 4 C 1.52998 * 109.47202 * 239.99898 * 2 1 3 5 5 C 1.50697 * 109.46942 * 60.00218 * 4 2 1 6 6 H 1.08006 * 120.00076 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00261 * 180.02562 * 5 4 2 8 8 N 1.31521 * 119.99708 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00494 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46853 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47266 * 119.99534 * 9 7 5 12 12 H 1.48500 * 109.47190 * 239.99997 * 9 7 5 13 13 C 1.53005 * 109.47176 * 119.99685 * 2 1 3 14 14 N 1.46895 * 109.47536 * 300.00381 * 13 2 1 15 15 C 1.46894 * 111.00155 * 179.97438 * 14 13 2 16 16 H 1.08997 * 112.91050 * 336.25084 * 15 14 13 17 17 C 1.53778 * 113.61535 * 107.50317 * 15 14 13 18 18 C 1.53783 * 87.08362 * 139.98011 * 17 15 14 19 19 C 1.52995 * 113.69012 * 89.12669 * 18 17 15 20 20 N 1.46907 * 109.47264 * 80.93510 * 19 18 17 21 21 C 1.50700 * 113.61221 * 220.01818 * 18 17 15 22 22 C 1.38237 * 119.99664 * 151.80898 * 21 18 17 23 23 C 1.38232 * 120.00156 * 179.97438 * 22 21 18 24 24 C 1.38245 * 119.99886 * 0.27902 * 23 22 21 25 25 C 1.38234 * 119.99266 * 359.50709 * 24 23 22 26 26 C 1.38229 * 120.00921 * 0.46973 * 25 24 23 27 27 C 1.53777 * 87.07909 * 334.56724 * 18 17 15 28 28 H 1.09000 * 109.47144 * 299.99656 * 1 2 3 29 29 H 1.08999 * 109.47278 * 59.99931 * 1 2 3 30 30 H 1.09002 * 109.47255 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47103 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47172 * 300.00134 * 3 2 1 33 33 H 1.09000 * 109.46902 * 60.00196 * 3 2 1 34 34 H 1.08997 * 109.47033 * 179.97438 * 4 2 1 35 35 H 1.08994 * 109.47207 * 300.00134 * 4 2 1 36 36 H 0.96999 * 119.99784 * 180.02562 * 8 7 5 37 37 H 1.09001 * 109.46967 * 179.97438 * 13 2 1 38 38 H 1.09000 * 109.46766 * 60.00613 * 13 2 1 39 39 H 1.00899 * 110.99941 * 303.95571 * 14 13 2 40 40 H 1.09009 * 113.61482 * 25.43017 * 17 15 14 41 41 H 1.08997 * 113.61648 * 254.53105 * 17 15 14 42 42 H 1.08995 * 109.47189 * 200.93703 * 19 18 17 43 43 H 1.09000 * 109.47477 * 320.93620 * 19 18 17 44 44 H 1.00898 * 110.99927 * 179.97438 * 20 19 18 45 45 H 1.00894 * 111.00112 * 303.95645 * 20 19 18 46 46 H 1.08002 * 120.00037 * 359.97438 * 22 21 18 47 47 H 1.07998 * 120.00488 * 179.97438 * 23 22 21 48 48 H 1.07994 * 119.99836 * 179.72714 * 24 23 22 49 49 H 1.08002 * 119.99487 * 180.25605 * 25 24 23 50 50 H 1.07998 * 120.00737 * 179.78732 * 26 25 24 51 51 H 1.09003 * 113.61661 * 139.98183 * 27 18 17 52 52 H 1.08998 * 113.61408 * 270.79718 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4796 6 1 0.9165 0.8671 -2.3805 7 6 1.8703 -0.4821 -3.7319 8 7 2.6264 -1.5515 -3.8526 9 14 1.2472 0.3980 -5.2571 10 1 0.4218 1.5645 -4.8529 11 1 2.4018 0.8646 -6.0659 12 1 0.4219 -0.5356 -6.0649 13 6 2.0400 -0.7212 1.2493 14 7 1.5504 -0.0288 2.4487 15 6 2.0209 -0.6952 3.6703 16 1 2.2677 -1.7451 3.5127 17 6 3.1122 0.0886 4.4183 18 6 2.4082 -0.3276 5.7207 19 6 2.9022 -1.6599 6.2878 20 7 4.1520 -1.4434 7.0290 21 6 2.3579 0.7665 6.7558 22 6 1.3288 0.7983 7.6782 23 6 1.2828 1.8015 8.6281 24 6 2.2629 2.7763 8.6520 25 6 3.2943 2.7418 7.7323 26 6 3.3406 1.7383 6.7827 27 6 1.1189 -0.4511 4.8917 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1300 -0.7208 -1.2494 35 1 1.6767 -1.7489 -1.2492 36 1 2.8608 -1.8828 -4.7336 37 1 3.1300 -0.7216 1.2491 38 1 1.6768 -1.7489 1.2493 39 1 1.8197 0.9436 2.4402 40 1 3.0849 1.1621 4.2310 41 1 4.1096 -0.3364 4.3061 42 1 2.1483 -2.0709 6.9591 43 1 3.0809 -2.3588 5.4707 44 1 4.4986 -2.3091 7.4141 45 1 4.8470 -1.0030 6.4450 46 1 0.5607 0.0394 7.6568 47 1 0.4786 1.8267 9.3486 48 1 2.2245 3.5625 9.3913 49 1 4.0622 3.5009 7.7536 50 1 4.1446 1.7134 6.0621 51 1 0.5070 -1.3119 5.1616 52 1 0.5459 0.4743 4.8350 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575298628.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:56 Heat of formation + Delta-G solvation = 26.172807 kcal Electronic energy + Delta-G solvation = -26660.294018 eV Core-core repulsion = 23238.060993 eV Total energy + Delta-G solvation = -3422.233025 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.72299 -38.43267 -37.15881 -34.44600 -32.85754 -31.85345 -31.00188 -30.47467 -27.01685 -26.41267 -26.25622 -25.87385 -24.72697 -23.41576 -22.36460 -22.30833 -20.97418 -18.80480 -17.76158 -17.11614 -16.31722 -16.20428 -15.79303 -15.22191 -15.03227 -14.76392 -14.55096 -14.35608 -14.13068 -13.73834 -13.48639 -13.26253 -13.19079 -12.89998 -12.69908 -12.43710 -12.39059 -12.01356 -11.96307 -11.61468 -11.44431 -11.25082 -11.09057 -10.96784 -10.87641 -10.74341 -10.51584 -10.45529 -10.34756 -10.22183 -10.04822 -9.67870 -9.00876 -8.97168 -8.90154 -8.81702 -8.67861 -8.31865 -8.01192 -5.96286 -3.96162 1.34371 1.36442 3.32342 3.40247 3.43859 3.73816 4.09603 4.23995 4.39977 4.50142 4.66250 4.76980 4.78989 4.88148 4.91070 5.00116 5.05872 5.27104 5.32899 5.39711 5.45181 5.49410 5.57347 5.64371 5.68876 5.70070 5.78795 5.91233 5.94538 5.98103 5.99012 6.07101 6.17155 6.29270 6.35224 6.44406 6.44919 6.52022 6.60134 6.67429 6.80803 6.84136 6.85348 6.96188 7.16161 7.21849 7.26154 7.27533 7.43785 7.68690 7.72474 7.86191 8.04287 8.48909 9.09505 9.66705 11.15437 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.024447 B = 0.002387 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.046969 B =11725.070976 C =12129.647147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.058 4.058 3 C -0.129 4.129 4 C 0.033 3.967 5 C -0.505 4.505 6 H 0.059 0.941 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.070 3.930 14 N -0.674 5.674 15 C 0.070 3.930 16 H 0.092 0.908 17 C -0.158 4.158 18 C -0.046 4.046 19 C 0.090 3.910 20 N -0.844 5.844 21 C -0.031 4.031 22 C -0.114 4.114 23 C -0.121 4.121 24 C -0.131 4.131 25 C -0.120 4.120 26 C -0.107 4.107 27 C -0.112 4.112 28 H 0.042 0.958 29 H 0.054 0.946 30 H 0.039 0.961 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.033 0.967 34 H 0.012 0.988 35 H 0.014 0.986 36 H 0.258 0.742 37 H 0.022 0.978 38 H 0.064 0.936 39 H 0.341 0.659 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.033 0.967 44 H 0.340 0.660 45 H 0.339 0.661 46 H 0.116 0.884 47 H 0.116 0.884 48 H 0.115 0.885 49 H 0.116 0.884 50 H 0.116 0.884 51 H 0.068 0.932 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.078 3.511 25.293 25.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.059 4.059 3 C -0.186 4.186 4 C -0.004 4.004 5 C -0.543 4.543 6 H 0.078 0.922 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.058 4.058 14 N -0.304 5.304 15 C -0.041 4.041 16 H 0.110 0.890 17 C -0.197 4.197 18 C -0.047 4.047 19 C -0.040 4.040 20 N -0.374 5.374 21 C -0.031 4.031 22 C -0.132 4.132 23 C -0.139 4.139 24 C -0.149 4.149 25 C -0.138 4.138 26 C -0.125 4.125 27 C -0.150 4.150 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.051 0.949 34 H 0.030 0.970 35 H 0.033 0.967 36 H 0.068 0.932 37 H 0.040 0.960 38 H 0.083 0.917 39 H 0.161 0.839 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.051 0.949 44 H 0.152 0.848 45 H 0.152 0.848 46 H 0.134 0.866 47 H 0.134 0.866 48 H 0.133 0.867 49 H 0.134 0.866 50 H 0.134 0.866 51 H 0.086 0.914 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.097 3.539 25.605 25.849 hybrid contribution 1.208 -0.031 -1.614 2.016 sum 1.305 3.509 23.991 24.281 Atomic orbital electron populations 1.21596 0.95024 1.00542 1.00158 1.20627 0.95836 0.94961 0.94452 1.21766 0.99634 0.96797 1.00396 1.19128 0.95853 0.95197 0.90260 1.21279 1.30579 1.11874 0.90599 0.92243 1.25023 0.95444 0.95136 0.99079 1.69981 1.37421 1.23255 1.23149 0.86609 0.78594 0.79748 0.83497 1.19767 1.21204 1.21162 1.22131 0.96260 0.97983 0.89459 1.60484 1.62850 1.06233 1.00878 1.22949 0.93457 0.98073 0.89603 0.88997 1.23831 0.98894 1.01193 0.95784 1.20718 0.98490 0.93606 0.91851 1.21519 0.92647 0.93885 0.95994 1.58637 1.07170 1.30499 1.41055 1.19350 0.94095 0.94497 0.95202 1.20897 0.98441 0.98597 0.95240 1.21062 0.98841 0.95200 0.98755 1.21052 0.95376 0.99111 0.99401 1.21077 0.98426 0.98617 0.95714 1.20916 0.98286 0.94638 0.98685 1.23154 0.95189 1.02644 0.94053 0.93893 0.92731 0.94217 0.94160 0.91732 0.94853 0.96970 0.96718 0.93250 0.95970 0.91720 0.83910 0.89506 0.91897 0.90786 0.94860 0.84792 0.84830 0.86608 0.86584 0.86685 0.86591 0.86602 0.91362 0.89260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 8.06 37.16 0.30 -1.95 16 2 C -0.06 -1.15 0.60 -154.50 -0.09 -1.24 16 3 C -0.13 -2.38 7.89 37.16 0.29 -2.08 16 4 C 0.03 0.83 4.04 -27.89 -0.11 0.72 16 5 C -0.50 -13.80 7.65 -34.44 -0.26 -14.06 16 6 H 0.06 1.59 5.68 -52.48 -0.30 1.29 16 7 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 9 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.07 1.19 4.49 -3.82 -0.02 1.17 16 14 N -0.67 -9.41 5.83 -105.87 -0.62 -10.02 16 15 C 0.07 0.81 3.83 -66.90 -0.26 0.55 16 16 H 0.09 1.09 7.37 -51.93 -0.38 0.70 16 17 C -0.16 -1.57 5.75 -25.92 -0.15 -1.72 16 18 C -0.05 -0.42 0.80 -154.85 -0.12 -0.54 16 19 C 0.09 0.76 6.12 -3.82 -0.02 0.74 16 20 N -0.84 -6.68 9.08 -10.37 -0.09 -6.77 16 21 C -0.03 -0.31 4.30 -104.62 -0.45 -0.76 16 22 C -0.11 -1.13 9.39 -39.58 -0.37 -1.50 16 23 C -0.12 -1.13 10.05 -39.58 -0.40 -1.52 16 24 C -0.13 -1.21 10.05 -39.58 -0.40 -1.61 16 25 C -0.12 -1.14 10.05 -39.59 -0.40 -1.54 16 26 C -0.11 -1.07 9.02 -39.58 -0.36 -1.43 16 27 C -0.11 -1.14 6.68 -25.92 -0.17 -1.32 16 28 H 0.04 0.75 7.60 -51.93 -0.39 0.35 16 29 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 33 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 34 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 1.14 8.13 -51.93 -0.42 0.71 16 39 H 0.34 4.66 6.24 -39.29 -0.25 4.42 16 40 H 0.09 0.91 7.11 -51.92 -0.37 0.54 16 41 H 0.06 0.61 7.95 -51.93 -0.41 0.20 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.03 0.28 7.34 -51.93 -0.38 -0.10 16 44 H 0.34 2.17 9.08 -39.29 -0.36 1.81 16 45 H 0.34 2.57 8.78 -39.30 -0.35 2.23 16 46 H 0.12 1.03 8.03 -52.49 -0.42 0.61 16 47 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 48 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 49 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 50 H 0.12 1.07 7.01 -52.49 -0.37 0.70 16 51 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 52 H 0.09 1.00 8.09 -51.93 -0.42 0.58 16 LS Contribution 400.93 15.07 6.04 6.04 Total: -1.00 -29.65 400.93 -11.25 -40.90 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -9.21 Total: 6.05 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: -3.09 Total: -26.68 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: 0.03 Total: -42.92 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.65 -11.25 -40.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575298628.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.074 kcal (2) G-P(sol) polarization free energy of solvation -29.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds