Wall clock time and date at job start Tue Mar 31 2020 11:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46979 * 2 1 4 4 C 1.52998 * 109.47202 * 239.99898 * 2 1 3 5 5 C 1.50697 * 109.46942 * 60.00218 * 4 2 1 6 6 H 1.08006 * 120.00076 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00261 * 180.02562 * 5 4 2 8 8 N 1.31521 * 119.99708 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00494 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46853 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47266 * 119.99534 * 9 7 5 12 12 H 1.48500 * 109.47190 * 239.99997 * 9 7 5 13 13 C 1.53005 * 109.47176 * 119.99685 * 2 1 3 14 14 N 1.46895 * 109.47536 * 300.00381 * 13 2 1 15 15 C 1.46894 * 111.00155 * 179.97438 * 14 13 2 16 16 H 1.08997 * 112.91050 * 336.25084 * 15 14 13 17 17 C 1.53778 * 113.61535 * 107.50317 * 15 14 13 18 18 C 1.53783 * 87.08362 * 139.98011 * 17 15 14 19 19 C 1.52995 * 113.69012 * 89.12669 * 18 17 15 20 20 N 1.46907 * 109.47264 * 80.93510 * 19 18 17 21 21 C 1.50700 * 113.61221 * 220.01818 * 18 17 15 22 22 C 1.38237 * 119.99664 * 151.80898 * 21 18 17 23 23 C 1.38232 * 120.00156 * 179.97438 * 22 21 18 24 24 C 1.38245 * 119.99886 * 0.27902 * 23 22 21 25 25 C 1.38234 * 119.99266 * 359.50709 * 24 23 22 26 26 C 1.38229 * 120.00921 * 0.46973 * 25 24 23 27 27 C 1.53777 * 87.07909 * 334.56724 * 18 17 15 28 28 H 1.09000 * 109.47144 * 299.99656 * 1 2 3 29 29 H 1.08999 * 109.47278 * 59.99931 * 1 2 3 30 30 H 1.09002 * 109.47255 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47103 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47172 * 300.00134 * 3 2 1 33 33 H 1.09000 * 109.46902 * 60.00196 * 3 2 1 34 34 H 1.08997 * 109.47033 * 179.97438 * 4 2 1 35 35 H 1.08994 * 109.47207 * 300.00134 * 4 2 1 36 36 H 0.96999 * 119.99784 * 180.02562 * 8 7 5 37 37 H 1.09001 * 109.46967 * 179.97438 * 13 2 1 38 38 H 1.09000 * 109.46766 * 60.00613 * 13 2 1 39 39 H 1.00899 * 110.99941 * 303.95571 * 14 13 2 40 40 H 1.09009 * 113.61482 * 25.43017 * 17 15 14 41 41 H 1.08997 * 113.61648 * 254.53105 * 17 15 14 42 42 H 1.08995 * 109.47189 * 200.93703 * 19 18 17 43 43 H 1.09000 * 109.47477 * 320.93620 * 19 18 17 44 44 H 1.00898 * 110.99927 * 179.97438 * 20 19 18 45 45 H 1.00894 * 111.00112 * 303.95645 * 20 19 18 46 46 H 1.08002 * 120.00037 * 359.97438 * 22 21 18 47 47 H 1.07998 * 120.00488 * 179.97438 * 23 22 21 48 48 H 1.07994 * 119.99836 * 179.72714 * 24 23 22 49 49 H 1.08002 * 119.99487 * 180.25605 * 25 24 23 50 50 H 1.07998 * 120.00737 * 179.78732 * 26 25 24 51 51 H 1.09003 * 113.61661 * 139.98183 * 27 18 17 52 52 H 1.08998 * 113.61408 * 270.79718 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4796 6 1 0.9165 0.8671 -2.3805 7 6 1.8703 -0.4821 -3.7319 8 7 2.6264 -1.5515 -3.8526 9 14 1.2472 0.3980 -5.2571 10 1 0.4218 1.5645 -4.8529 11 1 2.4018 0.8646 -6.0659 12 1 0.4219 -0.5356 -6.0649 13 6 2.0400 -0.7212 1.2493 14 7 1.5504 -0.0288 2.4487 15 6 2.0209 -0.6952 3.6703 16 1 2.2677 -1.7451 3.5127 17 6 3.1122 0.0886 4.4183 18 6 2.4082 -0.3276 5.7207 19 6 2.9022 -1.6599 6.2878 20 7 4.1520 -1.4434 7.0290 21 6 2.3579 0.7665 6.7558 22 6 1.3288 0.7983 7.6782 23 6 1.2828 1.8015 8.6281 24 6 2.2629 2.7763 8.6520 25 6 3.2943 2.7418 7.7323 26 6 3.3406 1.7383 6.7827 27 6 1.1189 -0.4511 4.8917 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1300 -0.7208 -1.2494 35 1 1.6767 -1.7489 -1.2492 36 1 2.8608 -1.8828 -4.7336 37 1 3.1300 -0.7216 1.2491 38 1 1.6768 -1.7489 1.2493 39 1 1.8197 0.9436 2.4402 40 1 3.0849 1.1621 4.2310 41 1 4.1096 -0.3364 4.3061 42 1 2.1483 -2.0709 6.9591 43 1 3.0809 -2.3588 5.4707 44 1 4.4986 -2.3091 7.4141 45 1 4.8470 -1.0030 6.4450 46 1 0.5607 0.0394 7.6568 47 1 0.4786 1.8267 9.3486 48 1 2.2245 3.5625 9.3913 49 1 4.0622 3.5009 7.7536 50 1 4.1446 1.7134 6.0621 51 1 0.5070 -1.3119 5.1616 52 1 0.5459 0.4743 4.8350 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575298628.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:56 Heat of formation + Delta-G solvation = 9.507354 kcal Electronic energy + Delta-G solvation = -26661.016686 eV Core-core repulsion = 23238.060993 eV Total energy + Delta-G solvation = -3422.955694 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.52515 -39.37016 -38.51471 -35.51600 -34.47474 -33.14701 -31.69355 -31.36889 -28.95246 -27.89470 -27.34017 -26.78390 -26.03424 -24.39131 -23.92259 -23.01880 -21.86838 -19.78752 -19.19116 -18.33282 -17.87072 -17.01805 -16.72462 -16.41913 -16.22858 -15.86989 -15.55301 -15.41172 -15.13270 -14.97595 -14.60145 -14.41672 -14.15865 -14.05080 -13.90804 -13.79867 -13.46000 -13.29112 -13.19143 -12.87476 -12.71824 -12.64310 -12.39360 -12.28731 -12.21591 -12.12075 -11.96220 -11.90748 -11.80375 -11.38267 -11.25920 -11.10955 -10.84615 -10.63883 -10.51247 -9.67059 -9.53151 -9.40884 -9.16312 -8.14358 -6.21029 0.63813 0.65745 1.39566 1.40792 1.52847 2.43430 3.02591 3.19646 3.28887 3.38414 3.52811 3.89886 3.92786 4.03516 4.08601 4.16199 4.25751 4.27364 4.31378 4.37769 4.39944 4.48076 4.63066 4.74807 4.76101 4.78638 4.82637 4.84038 4.88974 4.92592 4.96926 5.08510 5.12733 5.18540 5.22326 5.24463 5.26576 5.29825 5.38557 5.52270 5.54510 5.59082 5.67218 5.74029 5.75823 5.88020 5.88293 5.93258 6.19492 6.24053 6.28719 6.38457 6.57528 6.61258 6.94368 7.46276 8.98149 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.024447 B = 0.002387 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.046969 B =11725.070976 C =12129.647147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.055 4.055 3 C -0.121 4.121 4 C 0.039 3.961 5 C -0.512 4.512 6 H 0.065 0.935 7 C -0.006 4.006 8 N -0.938 5.938 9 Si 0.956 3.044 10 H -0.261 1.261 11 H -0.282 1.282 12 H -0.283 1.283 13 C 0.085 3.915 14 N -0.671 5.671 15 C 0.064 3.936 16 H 0.089 0.911 17 C -0.150 4.150 18 C -0.033 4.033 19 C 0.092 3.908 20 N -0.849 5.849 21 C -0.040 4.040 22 C -0.127 4.127 23 C -0.128 4.128 24 C -0.139 4.139 25 C -0.130 4.130 26 C -0.119 4.119 27 C -0.105 4.105 28 H 0.067 0.933 29 H 0.037 0.963 30 H 0.029 0.971 31 H 0.036 0.964 32 H 0.045 0.955 33 H 0.066 0.934 34 H -0.016 1.016 35 H -0.016 1.016 36 H 0.259 0.741 37 H 0.016 0.984 38 H 0.054 0.946 39 H 0.344 0.656 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.033 0.967 44 H 0.348 0.652 45 H 0.341 0.659 46 H 0.122 0.878 47 H 0.133 0.867 48 H 0.133 0.867 49 H 0.130 0.870 50 H 0.119 0.881 51 H 0.074 0.926 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.480 4.906 26.775 27.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.055 4.055 3 C -0.179 4.179 4 C 0.002 3.998 5 C -0.550 4.550 6 H 0.083 0.917 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.781 3.219 10 H -0.185 1.185 11 H -0.208 1.208 12 H -0.209 1.209 13 C -0.045 4.045 14 N -0.302 5.302 15 C -0.046 4.046 16 H 0.107 0.893 17 C -0.190 4.190 18 C -0.034 4.034 19 C -0.038 4.038 20 N -0.379 5.379 21 C -0.040 4.040 22 C -0.145 4.145 23 C -0.146 4.146 24 C -0.157 4.157 25 C -0.148 4.148 26 C -0.137 4.137 27 C -0.144 4.144 28 H 0.086 0.914 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.002 0.998 35 H 0.002 0.998 36 H 0.068 0.932 37 H 0.035 0.965 38 H 0.073 0.927 39 H 0.165 0.835 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.051 0.949 44 H 0.162 0.838 45 H 0.154 0.846 46 H 0.140 0.860 47 H 0.151 0.849 48 H 0.151 0.849 49 H 0.148 0.852 50 H 0.137 0.863 51 H 0.093 0.907 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.505 4.944 27.111 27.562 hybrid contribution 1.409 -0.479 -2.001 2.493 sum 0.904 4.465 25.110 25.519 Atomic orbital electron populations 1.21498 0.94403 1.00040 1.00450 1.20491 0.96201 0.95547 0.93281 1.21675 0.99422 0.95687 1.01086 1.19015 0.93946 0.94092 0.92782 1.21647 1.30020 1.11851 0.91452 0.91661 1.25922 0.95772 0.95935 1.02578 1.70117 1.38952 1.24955 1.23933 0.85530 0.78127 0.78814 0.79405 1.18493 1.20798 1.20872 1.21809 0.95720 0.97328 0.89600 1.60437 1.62899 1.06321 1.00530 1.23034 0.94844 0.97958 0.88809 0.89293 1.23748 0.98636 1.00805 0.95762 1.20592 0.97516 0.93873 0.91375 1.21481 0.92984 0.93334 0.96046 1.58625 1.07099 1.31157 1.41010 1.19427 0.94362 0.94702 0.95494 1.21083 0.98712 0.99154 0.95561 1.21342 0.99390 0.94989 0.98920 1.21345 0.95136 0.99553 0.99690 1.21344 0.98977 0.98863 0.95613 1.21054 0.98550 0.94978 0.99155 1.23080 0.95462 1.02549 0.93319 0.91440 0.94386 0.95139 0.94464 0.93548 0.91548 0.99778 0.99796 0.93199 0.96531 0.92707 0.83498 0.89656 0.91540 0.90657 0.94884 0.83822 0.84626 0.85998 0.84928 0.84886 0.85171 0.86287 0.90733 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.06 8.06 71.98 0.58 -3.48 16 2 C -0.05 -2.16 0.60 -52.18 -0.03 -2.19 16 3 C -0.12 -4.36 7.89 71.98 0.57 -3.79 16 4 C 0.04 2.03 4.04 29.85 0.12 2.16 16 5 C -0.51 -28.38 7.65 25.60 0.20 -28.18 16 6 H 0.07 3.49 5.68 -2.91 -0.02 3.47 16 7 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 8 N -0.94 -57.48 13.29 21.45 0.28 -57.19 16 9 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 10 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 13 C 0.08 2.84 4.49 86.31 0.39 3.23 16 14 N -0.67 -17.73 5.83 -488.87 -2.85 -20.58 16 15 C 0.06 1.38 3.83 45.44 0.17 1.56 16 16 H 0.09 2.01 7.37 -2.39 -0.02 1.99 16 17 C -0.15 -2.78 5.75 31.12 0.18 -2.60 16 18 C -0.03 -0.55 0.80 -52.40 -0.04 -0.59 16 19 C 0.09 1.43 6.12 86.30 0.53 1.96 16 20 N -0.85 -12.21 9.08 -186.72 -1.70 -13.90 16 21 C -0.04 -0.74 4.30 -19.86 -0.09 -0.82 16 22 C -0.13 -2.32 9.39 22.27 0.21 -2.11 16 23 C -0.13 -2.17 10.05 22.27 0.22 -1.94 16 24 C -0.14 -2.29 10.05 22.27 0.22 -2.07 16 25 C -0.13 -2.25 10.05 22.27 0.22 -2.02 16 26 C -0.12 -2.21 9.02 22.27 0.20 -2.01 16 27 C -0.11 -1.99 6.68 31.12 0.21 -1.78 16 28 H 0.07 2.22 7.60 -2.39 -0.02 2.21 16 29 H 0.04 1.55 6.62 -2.39 -0.02 1.53 16 30 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.05 1.82 6.62 -2.39 -0.02 1.81 16 33 H 0.07 1.93 6.57 -2.39 -0.02 1.92 16 34 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 35 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 36 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 37 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.05 1.94 8.13 -2.39 -0.02 1.92 16 39 H 0.34 8.67 6.24 -89.69 -0.56 8.11 16 40 H 0.08 1.64 7.11 -2.38 -0.02 1.62 16 41 H 0.07 1.19 7.95 -2.39 -0.02 1.17 16 42 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.03 0.52 7.34 -2.39 -0.02 0.50 16 44 H 0.35 3.96 9.08 -89.70 -0.81 3.15 16 45 H 0.34 4.71 8.78 -89.70 -0.79 3.92 16 46 H 0.12 1.98 8.03 -2.91 -0.02 1.96 16 47 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16 48 H 0.13 1.61 8.06 -2.91 -0.02 1.59 16 49 H 0.13 1.77 8.06 -2.91 -0.02 1.75 16 50 H 0.12 2.04 7.01 -2.91 -0.02 2.02 16 51 H 0.07 1.32 8.10 -2.39 -0.02 1.30 16 52 H 0.08 1.71 8.09 -2.39 -0.02 1.69 16 Total: -1.00 -64.02 400.93 0.84 -63.18 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: -1.25 Total: 26.39 kcal Atomic # 6 Polarization: -48.87 SS G_CDS: 4.33 Total: -44.55 kcal Atomic # 7 Polarization: -87.41 SS G_CDS: -4.26 Total: -91.67 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -64.02 0.84 -63.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575298628.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.685 kcal (2) G-P(sol) polarization free energy of solvation -64.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds