Wall clock time and date at job start Tue Mar 31 2020 11:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47153 * 2 1 4 4 C 1.53007 * 109.47102 * 180.47267 * 3 2 1 5 5 C 1.53000 * 109.51838 * 302.46659 * 4 3 2 6 6 N 1.46900 * 109.47128 * 305.98432 * 5 4 3 7 7 C 1.46905 * 110.99789 * 178.64980 * 6 5 4 8 8 C 1.50697 * 109.46972 * 179.97438 * 7 6 5 9 9 C 1.38641 * 119.74821 * 89.99701 * 8 7 6 10 10 C 1.37613 * 120.24722 * 179.70108 * 9 8 7 11 11 C 1.40712 * 119.74753 * 0.27906 * 10 9 8 12 12 C 1.41397 * 120.24643 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99562 * 208.61383 * 12 11 10 14 14 C 1.39943 * 120.00174 * 28.61620 * 12 11 10 15 15 N 1.30822 * 119.99774 * 14.77458 * 14 12 11 16 16 Si 1.86801 * 119.99950 * 194.77962 * 14 12 11 17 17 H 1.48499 * 109.47119 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47138 * 119.99600 * 16 14 12 19 19 H 1.48504 * 109.46903 * 239.99674 * 16 14 12 20 20 C 1.40718 * 119.51022 * 359.97438 * 11 10 9 21 21 C 1.37621 * 119.74529 * 0.02562 * 20 11 10 22 22 C 1.53117 * 109.51929 * 62.59146 * 4 3 2 23 23 C 1.53181 * 109.20194 * 177.56241 * 22 4 3 24 24 N 1.46845 * 109.55542 * 300.85942 * 23 22 4 25 25 C 1.46844 * 111.19928 * 61.74571 * 24 23 22 26 26 C 1.53036 * 109.52294 * 298.25817 * 25 24 23 27 27 H 1.09006 * 109.47042 * 300.00132 * 1 2 3 28 28 H 1.08997 * 109.47216 * 60.00343 * 1 2 3 29 29 H 1.09004 * 109.46900 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47219 * 239.99190 * 2 1 3 31 31 H 1.09002 * 109.46785 * 119.99511 * 2 1 3 32 32 H 1.09000 * 109.47360 * 60.47061 * 3 2 1 33 33 H 1.08997 * 109.46465 * 300.46766 * 3 2 1 34 34 H 1.08995 * 109.46676 * 185.98516 * 5 4 3 35 35 H 1.08995 * 109.47190 * 65.98504 * 5 4 3 36 36 H 1.00903 * 110.99784 * 302.60074 * 6 5 4 37 37 H 1.08993 * 109.47482 * 59.99716 * 7 6 5 38 38 H 1.09007 * 109.46799 * 299.99560 * 7 6 5 39 39 H 1.07998 * 119.87296 * 359.97438 * 9 8 7 40 40 H 1.08001 * 120.13085 * 180.29494 * 10 9 8 41 41 H 0.97003 * 119.99395 * 180.02562 * 15 14 12 42 42 H 1.08000 * 120.12943 * 180.02562 * 20 11 10 43 43 H 1.07994 * 119.87648 * 180.02562 * 21 20 11 44 44 H 1.08997 * 109.50853 * 297.56116 * 22 4 3 45 45 H 1.08999 * 109.50962 * 57.68676 * 22 4 3 46 46 H 1.09003 * 109.44468 * 180.83500 * 23 22 4 47 47 H 1.08996 * 109.43469 * 60.88559 * 23 22 4 48 48 H 1.00903 * 110.99556 * 185.84317 * 24 23 22 49 49 H 1.08998 * 109.46784 * 178.24121 * 25 24 23 50 50 H 1.09006 * 109.45534 * 58.26249 * 25 24 23 51 51 H 1.09006 * 109.50165 * 299.23732 * 26 25 24 52 52 H 1.08998 * 109.53800 * 179.14059 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0119 5 6 4.0907 0.6650 1.1986 6 7 3.4968 1.2135 2.4252 7 6 3.9502 0.4694 3.6079 8 6 3.3221 1.0598 4.8440 9 6 2.1022 0.5778 5.2931 10 6 1.5224 1.1052 6.4242 11 6 2.1696 2.1416 7.1221 12 6 1.5835 2.6909 8.2858 13 1 1.7810 3.7175 8.5567 14 6 0.7478 1.9043 9.0865 15 7 0.7322 0.6047 8.9367 16 14 -0.3456 2.7098 10.3691 17 1 -0.1425 4.1806 10.3394 18 1 -1.7673 2.3999 10.0727 19 1 0.0043 2.1893 11.7152 20 6 3.4048 2.6265 6.6541 21 6 3.9662 2.0841 5.5207 22 6 4.0717 0.7817 -1.2988 23 6 5.6020 0.8401 -1.3318 24 7 6.0418 2.2399 -1.2740 25 6 5.6109 2.8808 -0.0250 26 6 4.0822 2.8842 0.0470 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5140 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6836 1.9539 0.8942 33 1 1.6698 1.9586 -0.8858 34 1 5.1758 0.7548 1.2487 35 1 3.8171 -0.3855 1.1008 36 1 3.7007 2.1975 2.5170 37 1 5.0353 0.5357 3.6851 38 1 3.6558 -0.5760 3.5143 39 1 1.6073 -0.2176 4.7557 40 1 0.5743 0.7251 6.7750 41 1 0.1526 0.0596 9.4915 42 1 3.9105 3.4214 7.1822 43 1 4.9143 2.4543 5.1598 44 1 3.7450 -0.2579 -1.3254 45 1 3.6689 1.3125 -2.1615 46 1 5.9628 0.3838 -2.2536 47 1 6.0041 0.2973 -0.4763 48 1 7.0417 2.3098 -1.3900 49 1 5.9780 3.9067 0.0023 50 1 6.0131 2.3283 0.8242 51 1 3.6795 3.4481 -0.7945 52 1 3.7623 3.3462 0.9810 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577371648.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:08 Heat of formation + Delta-G solvation = -7.717589 kcal Electronic energy + Delta-G solvation = -26992.692770 eV Core-core repulsion = 23568.990147 eV Total energy + Delta-G solvation = -3423.702623 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.04689 -37.70148 -35.82900 -34.69773 -33.39840 -31.86094 -30.95540 -29.97097 -29.24232 -26.99934 -26.63649 -24.62008 -23.54087 -22.70314 -22.27180 -20.94386 -20.63217 -19.88024 -18.15343 -17.26382 -16.77827 -15.77929 -15.42884 -15.20990 -14.94162 -14.45184 -14.33490 -14.01806 -13.92447 -13.74632 -13.66393 -13.18458 -13.09272 -12.56793 -12.54897 -12.31442 -12.00199 -11.89084 -11.73183 -11.63477 -11.52128 -11.46463 -11.29178 -11.14903 -11.07196 -10.99520 -10.69787 -10.42391 -10.34736 -10.21276 -10.04777 -9.96455 -9.55024 -9.33626 -9.15962 -8.63347 -7.94090 -7.42622 -7.24910 -6.71762 -4.33917 2.75590 3.07714 3.09470 3.14315 3.17738 3.95909 4.02932 4.44515 4.64553 4.67409 4.74185 4.92526 5.08011 5.13090 5.20918 5.26000 5.33916 5.39677 5.45878 5.51988 5.59720 5.66645 5.71426 5.77162 5.81794 5.86341 5.88637 5.94068 5.96433 6.03477 6.09284 6.14368 6.20595 6.26165 6.29572 6.37417 6.37911 6.46680 6.56373 6.62466 6.83913 6.96811 7.11009 7.16164 7.29659 7.36834 7.44937 7.63780 7.74884 7.90505 8.08230 8.15333 8.32564 8.67004 8.92284 8.99539 10.24121 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019013 B = 0.002794 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.302991 B =10017.312784 C =10802.258942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.096 4.096 4 C -0.054 4.054 5 C 0.064 3.936 6 N -0.676 5.676 7 C 0.125 3.875 8 C -0.206 4.206 9 C -0.079 4.079 10 C -0.161 4.161 11 C 0.114 3.886 12 C -0.466 4.466 13 H 0.076 0.924 14 C 0.075 3.925 15 N -0.799 5.799 16 Si 0.907 3.093 17 H -0.261 1.261 18 H -0.272 1.272 19 H -0.275 1.275 20 C -0.223 4.223 21 C -0.088 4.088 22 C -0.106 4.106 23 C 0.055 3.945 24 N -0.689 5.689 25 C 0.055 3.945 26 C -0.109 4.109 27 H 0.057 0.943 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.020 0.980 35 H 0.068 0.932 36 H 0.337 0.663 37 H 0.014 0.986 38 H 0.060 0.940 39 H 0.087 0.913 40 H 0.114 0.886 41 H 0.279 0.721 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.031 0.969 48 H 0.338 0.662 49 H 0.071 0.929 50 H 0.031 0.969 51 H 0.069 0.931 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.402 -0.617 -17.731 18.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.133 4.133 4 C -0.054 4.054 5 C -0.065 4.065 6 N -0.308 5.308 7 C -0.003 4.003 8 C -0.208 4.208 9 C -0.098 4.098 10 C -0.180 4.180 11 C 0.111 3.889 12 C -0.497 4.497 13 H 0.094 0.906 14 C -0.141 4.141 15 N -0.425 5.425 16 Si 0.731 3.269 17 H -0.185 1.185 18 H -0.198 1.198 19 H -0.201 1.201 20 C -0.243 4.243 21 C -0.107 4.107 22 C -0.144 4.144 23 C -0.075 4.075 24 N -0.320 5.320 25 C -0.075 4.075 26 C -0.147 4.147 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.038 0.962 35 H 0.086 0.914 36 H 0.156 0.844 37 H 0.032 0.968 38 H 0.079 0.921 39 H 0.105 0.895 40 H 0.132 0.868 41 H 0.089 0.911 42 H 0.108 0.892 43 H 0.099 0.901 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.049 0.951 48 H 0.156 0.844 49 H 0.089 0.911 50 H 0.049 0.951 51 H 0.087 0.913 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.181 -0.971 -18.041 18.544 hybrid contribution 1.118 0.119 1.434 1.822 sum 5.298 -0.851 -16.607 17.453 Atomic orbital electron populations 1.21750 0.96420 1.01042 1.01573 1.21541 0.95359 0.97336 1.01573 1.21472 0.93052 0.96949 1.01868 1.20601 0.96143 0.94747 0.93917 1.22105 0.95374 0.98922 0.90125 1.60651 1.62028 1.07151 1.00968 1.20535 0.94852 0.96808 0.88081 1.18908 0.99092 1.03652 0.99148 1.20486 0.94588 0.98574 0.96197 1.21264 1.00781 1.00913 0.95057 1.17622 0.89486 0.90502 0.91279 1.19593 1.24620 0.98838 1.06604 0.90568 1.25873 0.95817 0.94478 0.97971 1.69822 1.32053 1.05059 1.35545 0.86291 0.79992 0.80662 0.79924 1.18487 1.19760 1.20078 1.20970 0.97597 1.05585 1.00145 1.20350 0.97625 0.96629 0.96103 1.21704 0.94223 1.00711 0.97760 1.21992 0.96536 0.88722 1.00223 1.60297 1.18456 1.16312 1.36933 1.21982 0.96591 0.98784 0.90095 1.21654 0.94162 0.96532 1.02318 0.92408 0.93472 0.93374 0.93054 0.91171 0.90331 0.93245 0.96165 0.91385 0.84408 0.96780 0.92135 0.89501 0.86845 0.91052 0.89194 0.90061 0.91407 0.91227 0.91246 0.95089 0.84438 0.91064 0.95065 0.91260 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 37.16 0.37 -1.30 16 2 C -0.12 -1.36 5.23 -26.73 -0.14 -1.50 16 3 C -0.10 -1.09 4.01 -26.73 -0.11 -1.20 16 4 C -0.05 -0.57 0.37 -154.39 -0.06 -0.63 16 5 C 0.06 0.78 3.43 -3.82 -0.01 0.77 16 6 N -0.68 -10.00 5.51 -115.06 -0.63 -10.64 16 7 C 0.13 2.15 5.80 -4.97 -0.03 2.12 16 8 C -0.21 -4.38 5.41 -104.33 -0.56 -4.94 16 9 C -0.08 -1.84 9.67 -39.66 -0.38 -2.23 16 10 C -0.16 -4.18 8.66 -38.88 -0.34 -4.51 16 11 C 0.11 3.03 5.53 -106.82 -0.59 2.44 16 12 C -0.47 -12.47 9.05 -37.74 -0.34 -12.82 16 13 H 0.08 1.97 7.89 -52.49 -0.41 1.56 16 14 C 0.08 1.92 5.17 -17.34 -0.09 1.83 16 15 N -0.80 -20.89 11.06 55.55 0.61 -20.28 16 16 Si 0.91 18.87 29.58 -169.99 -5.03 13.84 16 17 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 18 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 19 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 20 C -0.22 -5.47 9.80 -38.87 -0.38 -5.85 16 21 C -0.09 -1.94 9.67 -39.66 -0.38 -2.32 16 22 C -0.11 -1.01 4.53 -26.58 -0.12 -1.13 16 23 C 0.05 0.49 6.31 -3.76 -0.02 0.47 16 24 N -0.69 -6.39 6.85 -113.74 -0.78 -7.17 16 25 C 0.05 0.54 6.30 -3.84 -0.02 0.52 16 26 C -0.11 -1.16 4.72 -26.65 -0.13 -1.29 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.52 6.53 -51.93 -0.34 0.18 16 31 H 0.07 0.90 6.55 -51.93 -0.34 0.56 16 32 H 0.08 1.06 7.54 -51.93 -0.39 0.67 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.02 0.25 4.95 -51.93 -0.26 0.00 16 35 H 0.07 0.86 6.75 -51.93 -0.35 0.51 16 36 H 0.34 5.09 7.03 -39.29 -0.28 4.81 16 37 H 0.01 0.24 8.08 -51.93 -0.42 -0.18 16 38 H 0.06 1.03 8.08 -51.92 -0.42 0.61 16 39 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 40 H 0.11 3.07 6.36 -52.49 -0.33 2.73 16 41 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 42 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 43 H 0.08 1.58 8.06 -52.49 -0.42 1.16 16 44 H 0.07 0.62 6.62 -51.93 -0.34 0.28 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.03 0.30 6.65 -51.93 -0.35 -0.05 16 48 H 0.34 2.61 8.90 -39.29 -0.35 2.26 16 49 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.03 0.34 6.39 -51.93 -0.33 0.01 16 51 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 52 H 0.07 0.81 6.65 -51.93 -0.35 0.46 16 LS Contribution 390.47 15.07 5.88 5.88 Total: -1.00 -26.51 390.47 -12.33 -38.84 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -9.04 Total: 11.09 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: -3.34 Total: -31.57 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: -0.80 Total: -38.08 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -26.51 -12.33 -38.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577371648.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.123 kcal (2) G-P(sol) polarization free energy of solvation -26.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds