Wall clock time and date at job start Tue Mar 31 2020 11:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47153 * 2 1 4 4 C 1.53007 * 109.47102 * 180.47267 * 3 2 1 5 5 C 1.53000 * 109.51838 * 302.46659 * 4 3 2 6 6 N 1.46900 * 109.47128 * 305.98432 * 5 4 3 7 7 C 1.46905 * 110.99789 * 178.64980 * 6 5 4 8 8 C 1.50697 * 109.46972 * 179.97438 * 7 6 5 9 9 C 1.38641 * 119.74821 * 89.99701 * 8 7 6 10 10 C 1.37613 * 120.24722 * 179.70108 * 9 8 7 11 11 C 1.40712 * 119.74753 * 0.27906 * 10 9 8 12 12 C 1.41397 * 120.24643 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99562 * 208.61383 * 12 11 10 14 14 C 1.39943 * 120.00174 * 28.61620 * 12 11 10 15 15 N 1.30822 * 119.99774 * 14.77458 * 14 12 11 16 16 Si 1.86801 * 119.99950 * 194.77962 * 14 12 11 17 17 H 1.48499 * 109.47119 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47138 * 119.99600 * 16 14 12 19 19 H 1.48504 * 109.46903 * 239.99674 * 16 14 12 20 20 C 1.40718 * 119.51022 * 359.97438 * 11 10 9 21 21 C 1.37621 * 119.74529 * 0.02562 * 20 11 10 22 22 C 1.53117 * 109.51929 * 62.59146 * 4 3 2 23 23 C 1.53181 * 109.20194 * 177.56241 * 22 4 3 24 24 N 1.46845 * 109.55542 * 300.85942 * 23 22 4 25 25 C 1.46844 * 111.19928 * 61.74571 * 24 23 22 26 26 C 1.53036 * 109.52294 * 298.25817 * 25 24 23 27 27 H 1.09006 * 109.47042 * 300.00132 * 1 2 3 28 28 H 1.08997 * 109.47216 * 60.00343 * 1 2 3 29 29 H 1.09004 * 109.46900 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47219 * 239.99190 * 2 1 3 31 31 H 1.09002 * 109.46785 * 119.99511 * 2 1 3 32 32 H 1.09000 * 109.47360 * 60.47061 * 3 2 1 33 33 H 1.08997 * 109.46465 * 300.46766 * 3 2 1 34 34 H 1.08995 * 109.46676 * 185.98516 * 5 4 3 35 35 H 1.08995 * 109.47190 * 65.98504 * 5 4 3 36 36 H 1.00903 * 110.99784 * 302.60074 * 6 5 4 37 37 H 1.08993 * 109.47482 * 59.99716 * 7 6 5 38 38 H 1.09007 * 109.46799 * 299.99560 * 7 6 5 39 39 H 1.07998 * 119.87296 * 359.97438 * 9 8 7 40 40 H 1.08001 * 120.13085 * 180.29494 * 10 9 8 41 41 H 0.97003 * 119.99395 * 180.02562 * 15 14 12 42 42 H 1.08000 * 120.12943 * 180.02562 * 20 11 10 43 43 H 1.07994 * 119.87648 * 180.02562 * 21 20 11 44 44 H 1.08997 * 109.50853 * 297.56116 * 22 4 3 45 45 H 1.08999 * 109.50962 * 57.68676 * 22 4 3 46 46 H 1.09003 * 109.44468 * 180.83500 * 23 22 4 47 47 H 1.08996 * 109.43469 * 60.88559 * 23 22 4 48 48 H 1.00903 * 110.99556 * 185.84317 * 24 23 22 49 49 H 1.08998 * 109.46784 * 178.24121 * 25 24 23 50 50 H 1.09006 * 109.45534 * 58.26249 * 25 24 23 51 51 H 1.09006 * 109.50165 * 299.23732 * 26 25 24 52 52 H 1.08998 * 109.53800 * 179.14059 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0119 5 6 4.0907 0.6650 1.1986 6 7 3.4968 1.2135 2.4252 7 6 3.9502 0.4694 3.6079 8 6 3.3221 1.0598 4.8440 9 6 2.1022 0.5778 5.2931 10 6 1.5224 1.1052 6.4242 11 6 2.1696 2.1416 7.1221 12 6 1.5835 2.6909 8.2858 13 1 1.7810 3.7175 8.5567 14 6 0.7478 1.9043 9.0865 15 7 0.7322 0.6047 8.9367 16 14 -0.3456 2.7098 10.3691 17 1 -0.1425 4.1806 10.3394 18 1 -1.7673 2.3999 10.0727 19 1 0.0043 2.1893 11.7152 20 6 3.4048 2.6265 6.6541 21 6 3.9662 2.0841 5.5207 22 6 4.0717 0.7817 -1.2988 23 6 5.6020 0.8401 -1.3318 24 7 6.0418 2.2399 -1.2740 25 6 5.6109 2.8808 -0.0250 26 6 4.0822 2.8842 0.0470 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5140 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6836 1.9539 0.8942 33 1 1.6698 1.9586 -0.8858 34 1 5.1758 0.7548 1.2487 35 1 3.8171 -0.3855 1.1008 36 1 3.7007 2.1975 2.5170 37 1 5.0353 0.5357 3.6851 38 1 3.6558 -0.5760 3.5143 39 1 1.6073 -0.2176 4.7557 40 1 0.5743 0.7251 6.7750 41 1 0.1526 0.0596 9.4915 42 1 3.9105 3.4214 7.1822 43 1 4.9143 2.4543 5.1598 44 1 3.7450 -0.2579 -1.3254 45 1 3.6689 1.3125 -2.1615 46 1 5.9628 0.3838 -2.2536 47 1 6.0041 0.2973 -0.4763 48 1 7.0417 2.3098 -1.3900 49 1 5.9780 3.9067 0.0023 50 1 6.0131 2.3283 0.8242 51 1 3.6795 3.4481 -0.7945 52 1 3.7623 3.3462 0.9810 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577371648.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:07 Heat of formation + Delta-G solvation = -21.544641 kcal Electronic energy + Delta-G solvation = -26993.292356 eV Core-core repulsion = 23568.990147 eV Total energy + Delta-G solvation = -3424.302209 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.93710 -39.49281 -36.89165 -36.00717 -35.02218 -32.90496 -31.78044 -31.57040 -31.11162 -28.46099 -27.62540 -26.03290 -24.56115 -23.93257 -23.14111 -22.82727 -21.64684 -21.49955 -19.19603 -19.09333 -17.56938 -17.16014 -16.86905 -16.40648 -15.98589 -15.72465 -15.54126 -15.43425 -15.22135 -14.95887 -14.57586 -14.50368 -14.30140 -14.07708 -13.80053 -13.52869 -13.36988 -13.24256 -13.11365 -12.83893 -12.72950 -12.65965 -12.53194 -12.43225 -12.23947 -12.11198 -12.08886 -12.00488 -11.58981 -11.33779 -11.22741 -11.12499 -11.03987 -10.90933 -10.81534 -9.44561 -9.32910 -9.21148 -9.00059 -8.60558 -6.33181 0.96100 1.15933 1.37511 1.49064 1.52388 2.21644 2.72809 3.30226 3.44946 3.77054 3.80992 3.87591 3.95080 4.21439 4.30669 4.31940 4.34199 4.37979 4.39504 4.51935 4.54725 4.57457 4.59461 4.67218 4.72870 4.76895 4.84069 4.85555 4.92942 4.96328 5.02022 5.07502 5.11234 5.15728 5.18705 5.20999 5.30047 5.36543 5.38374 5.40559 5.47507 5.48398 5.63732 5.68216 5.73666 5.95411 6.10175 6.12076 6.20903 6.31039 6.41545 6.51993 6.58358 6.73093 6.96620 7.05647 8.37755 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019013 B = 0.002794 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.302991 B =10017.312784 C =10802.258942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.092 4.092 4 C -0.047 4.047 5 C 0.071 3.929 6 N -0.679 5.679 7 C 0.133 3.867 8 C -0.191 4.191 9 C -0.085 4.085 10 C -0.183 4.183 11 C 0.080 3.920 12 C -0.505 4.505 13 H 0.072 0.928 14 C 0.033 3.967 15 N -0.833 5.833 16 Si 0.981 3.019 17 H -0.259 1.259 18 H -0.265 1.265 19 H -0.266 1.266 20 C -0.238 4.238 21 C -0.087 4.087 22 C -0.102 4.102 23 C 0.055 3.945 24 N -0.692 5.692 25 C 0.058 3.942 26 C -0.107 4.107 27 H 0.038 0.962 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.025 0.975 35 H 0.068 0.932 36 H 0.337 0.663 37 H 0.027 0.973 38 H 0.064 0.936 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.286 0.714 42 H 0.094 0.906 43 H 0.113 0.887 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.084 0.916 47 H 0.027 0.973 48 H 0.349 0.651 49 H 0.077 0.923 50 H 0.023 0.977 51 H 0.068 0.932 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.354 -0.746 -19.544 20.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.129 4.129 4 C -0.048 4.048 5 C -0.058 4.058 6 N -0.311 5.311 7 C 0.005 3.995 8 C -0.192 4.192 9 C -0.104 4.104 10 C -0.203 4.203 11 C 0.078 3.922 12 C -0.536 4.536 13 H 0.090 0.910 14 C -0.180 4.180 15 N -0.460 5.460 16 Si 0.802 3.198 17 H -0.182 1.182 18 H -0.190 1.190 19 H -0.191 1.191 20 C -0.258 4.258 21 C -0.106 4.106 22 C -0.140 4.140 23 C -0.074 4.074 24 N -0.324 5.324 25 C -0.071 4.071 26 C -0.145 4.145 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.043 0.957 35 H 0.086 0.914 36 H 0.156 0.844 37 H 0.045 0.955 38 H 0.082 0.918 39 H 0.118 0.882 40 H 0.111 0.889 41 H 0.096 0.904 42 H 0.113 0.887 43 H 0.131 0.869 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.102 0.898 47 H 0.045 0.955 48 H 0.167 0.833 49 H 0.095 0.905 50 H 0.041 0.959 51 H 0.086 0.914 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.152 -1.102 -19.876 20.562 hybrid contribution 0.912 0.126 1.832 2.050 sum 6.064 -0.976 -18.044 19.061 Atomic orbital electron populations 1.21744 0.96442 1.01343 1.01216 1.21498 0.95340 0.97078 1.01476 1.21408 0.93644 0.96889 1.00983 1.20538 0.95496 0.94755 0.93973 1.22095 0.95446 0.98927 0.89296 1.60546 1.62498 1.06983 1.01072 1.20407 0.95139 0.96837 0.87109 1.19333 0.97776 1.02198 0.99906 1.20695 0.95463 0.98792 0.95477 1.21201 1.00641 1.01941 0.96502 1.17949 0.90717 0.91491 0.92040 1.19818 1.26892 0.99077 1.07769 0.90973 1.26714 0.96588 0.94847 0.99867 1.69879 1.32936 1.06331 1.36851 0.85182 0.77935 0.79503 0.77200 1.18249 1.18967 1.19081 1.21182 0.97255 1.06052 1.01278 1.20671 0.98619 0.96232 0.95073 1.21671 0.94709 1.00919 0.96693 1.22011 0.96013 0.88599 1.00809 1.60289 1.19360 1.16429 1.36300 1.21919 0.95845 0.99176 0.90175 1.21621 0.94868 0.96324 1.01716 0.94244 0.92335 0.92773 0.91414 0.92852 0.92762 0.92528 0.95724 0.91406 0.84449 0.95505 0.91765 0.88209 0.88915 0.90381 0.88740 0.86885 0.90688 0.91212 0.89773 0.95528 0.83299 0.90457 0.95877 0.91351 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.91 71.98 0.71 -2.46 16 2 C -0.12 -2.45 5.23 30.60 0.16 -2.29 16 3 C -0.09 -1.97 4.01 30.60 0.12 -1.85 16 4 C -0.05 -0.92 0.37 -52.10 -0.02 -0.94 16 5 C 0.07 1.59 3.43 86.30 0.30 1.89 16 6 N -0.68 -19.03 5.51 -517.94 -2.86 -21.89 16 7 C 0.13 4.31 5.80 85.56 0.50 4.80 16 8 C -0.19 -7.90 5.41 -19.68 -0.11 -8.01 16 9 C -0.09 -4.00 9.67 22.22 0.21 -3.79 16 10 C -0.18 -9.89 8.66 22.73 0.20 -9.69 16 11 C 0.08 4.44 5.53 -21.29 -0.12 4.32 16 12 C -0.51 -28.11 9.05 23.46 0.21 -27.90 16 13 H 0.07 3.89 7.89 -2.91 -0.02 3.87 16 14 C 0.03 1.74 5.17 85.26 0.44 2.18 16 15 N -0.83 -45.03 11.06 21.83 0.24 -44.79 16 16 Si 0.98 39.46 29.58 68.60 2.03 41.48 16 17 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 18 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 19 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 20 C -0.24 -11.82 9.80 22.73 0.22 -11.60 16 21 C -0.09 -3.75 9.67 22.22 0.21 -3.53 16 22 C -0.10 -1.67 4.53 30.69 0.14 -1.53 16 23 C 0.05 0.84 6.31 86.37 0.54 1.38 16 24 N -0.69 -11.03 6.85 -513.76 -3.52 -14.55 16 25 C 0.06 1.04 6.30 86.33 0.54 1.58 16 26 C -0.11 -2.11 4.72 30.64 0.14 -1.97 16 27 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 1.21 6.53 -2.39 -0.02 1.19 16 31 H 0.05 1.31 6.55 -2.39 -0.02 1.29 16 32 H 0.05 1.44 7.54 -2.39 -0.02 1.43 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.02 0.55 4.95 -2.39 -0.01 0.54 16 35 H 0.07 1.55 6.75 -2.39 -0.02 1.54 16 36 H 0.34 9.65 7.03 -89.69 -0.63 9.02 16 37 H 0.03 0.82 8.08 -2.39 -0.02 0.80 16 38 H 0.06 2.06 8.08 -2.38 -0.02 2.04 16 39 H 0.10 4.32 8.06 -2.91 -0.02 4.30 16 40 H 0.09 5.29 6.36 -2.91 -0.02 5.27 16 41 H 0.29 13.96 8.30 -92.71 -0.77 13.19 16 42 H 0.09 4.47 8.06 -2.91 -0.02 4.45 16 43 H 0.11 4.10 8.06 -2.91 -0.02 4.08 16 44 H 0.07 1.14 6.62 -2.39 -0.02 1.12 16 45 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 46 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.03 0.44 6.65 -2.39 -0.02 0.42 16 48 H 0.35 4.46 8.90 -89.69 -0.80 3.66 16 49 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.02 0.45 6.39 -2.38 -0.02 0.44 16 51 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 52 H 0.06 1.31 6.65 -2.39 -0.02 1.30 16 Total: -1.00 -58.54 390.47 -0.21 -58.74 By element: Atomic # 1 Polarization: 40.93 SS G_CDS: -0.52 Total: 40.41 kcal Atomic # 6 Polarization: -63.83 SS G_CDS: 4.42 Total: -59.41 kcal Atomic # 7 Polarization: -75.10 SS G_CDS: -6.13 Total: -81.23 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.48 kcal Total: -58.54 -0.21 -58.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577371648.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.198 kcal (2) G-P(sol) polarization free energy of solvation -58.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds