Wall clock time and date at job start Tue Mar 31 2020 11:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47246 * 2 1 4 4 C 1.53001 * 109.46965 * 119.99948 * 2 1 3 5 5 C 1.52995 * 109.47267 * 175.00064 * 4 2 1 6 6 N 1.46900 * 109.47433 * 183.99978 * 5 4 2 7 7 C 1.46896 * 111.00352 * 160.23403 * 6 5 4 8 8 C 1.50705 * 109.47372 * 288.16450 * 7 6 5 9 9 H 1.08002 * 119.99431 * 355.00121 * 8 7 6 10 10 C 1.37868 * 120.00153 * 174.99867 * 8 7 6 11 11 N 1.31519 * 119.99837 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 120.00204 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.46847 * 90.00004 * 12 10 8 14 14 H 1.48494 * 109.47139 * 209.99861 * 12 10 8 15 15 H 1.48494 * 109.47269 * 330.00320 * 12 10 8 16 16 C 1.46896 * 111.00551 * 284.19271 * 6 5 4 17 17 C 1.52996 * 109.47571 * 169.99243 * 16 6 5 18 18 N 1.46904 * 109.47115 * 179.97438 * 17 16 6 19 19 C 1.47908 * 110.99640 * 189.86739 * 18 17 16 20 20 C 1.54605 * 102.62635 * 265.41581 * 19 18 17 21 21 C 1.51575 * 102.82763 * 334.44277 * 20 19 18 22 22 C 1.37913 * 131.56417 * 196.19606 * 21 20 19 23 23 C 1.38295 * 120.08238 * 179.61580 * 22 21 20 24 24 C 1.38305 * 119.88664 * 0.02562 * 23 22 21 25 25 C 1.37910 * 120.26215 * 0.14225 * 24 23 22 26 26 C 1.38972 * 107.95156 * 16.04071 * 21 20 19 27 27 H 1.08995 * 109.47373 * 300.00710 * 1 2 3 28 28 H 1.09005 * 109.46592 * 60.00566 * 1 2 3 29 29 H 1.08995 * 109.47296 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47378 * 239.99978 * 2 1 3 31 31 H 1.09001 * 109.47560 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47243 * 299.99874 * 3 2 1 33 33 H 1.09001 * 109.46950 * 59.99716 * 3 2 1 34 34 H 1.09002 * 109.47125 * 54.99920 * 4 2 1 35 35 H 1.09003 * 109.47296 * 295.00112 * 4 2 1 36 36 H 1.08997 * 109.47200 * 64.00556 * 5 4 2 37 37 H 1.08995 * 109.47389 * 304.00112 * 5 4 2 38 38 H 1.09002 * 109.47251 * 48.16422 * 7 6 5 39 39 H 1.08997 * 109.47226 * 168.16827 * 7 6 5 40 40 H 0.97006 * 119.99463 * 180.02562 * 11 10 8 41 41 H 1.09006 * 109.46872 * 49.99368 * 16 6 5 42 42 H 1.09002 * 109.47199 * 289.99893 * 16 6 5 43 43 H 1.09006 * 109.46921 * 60.00155 * 17 16 6 44 44 H 1.08994 * 109.47570 * 300.00237 * 17 16 6 45 45 H 1.08999 * 110.78381 * 23.70370 * 19 18 17 46 46 H 1.09006 * 110.77677 * 146.94701 * 19 18 17 47 47 H 1.08997 * 110.73958 * 92.78051 * 20 19 18 48 48 H 1.09002 * 110.74354 * 216.10953 * 20 19 18 49 49 H 1.08008 * 119.95713 * 359.60293 * 22 21 20 50 50 H 1.08007 * 120.06021 * 179.97438 * 23 22 21 51 51 H 1.07995 * 119.86962 * 180.15745 * 24 23 22 52 52 H 1.07996 * 119.90037 * 180.19632 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5647 -0.8311 1.1881 6 7 4.0464 -1.6067 2.3389 7 6 5.3956 -2.1325 2.0918 8 6 5.3238 -3.2429 1.0754 9 1 4.3644 -3.5840 0.7153 10 6 6.4826 -3.8233 0.6054 11 7 6.4199 -4.7920 -0.2820 12 14 8.1420 -3.2327 1.2277 13 1 8.5292 -4.0187 2.4267 14 1 9.1629 -3.4158 0.1650 15 1 8.0530 -1.7945 1.5862 16 6 4.0117 -0.8025 3.5676 17 6 4.2778 -1.7038 4.7749 18 7 4.2437 -0.8993 6.0036 19 6 4.7256 -1.6815 7.1627 20 6 3.4139 -2.2333 7.7670 21 6 2.3820 -1.2198 7.3136 22 6 1.0961 -0.9681 7.7438 23 6 0.3532 0.0394 7.1560 24 6 0.9018 0.7943 6.1352 25 6 2.1860 0.5445 5.6990 26 6 2.9412 -0.4696 6.2860 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6053 -1.7198 1.2952 35 1 1.7515 -0.1583 2.1370 36 1 4.0022 0.1669 1.2139 37 1 3.8562 -1.3318 0.2648 38 1 6.0331 -1.3337 1.7127 39 1 5.8113 -2.5183 3.0226 40 1 7.2353 -5.2006 -0.6124 41 1 3.0310 -0.3379 3.6702 42 1 4.7770 -0.0280 3.5167 43 1 5.2585 -2.1684 4.6723 44 1 3.5125 -2.4782 4.8259 45 1 5.3739 -2.4952 6.8376 46 1 5.2424 -1.0384 7.8752 47 1 3.1885 -3.2206 7.3637 48 1 3.4729 -2.2638 8.8550 49 1 0.6686 -1.5588 8.5406 50 1 -0.6540 0.2359 7.4929 51 1 0.3223 1.5827 5.6781 52 1 2.6097 1.1396 4.9036 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001615744834.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:16 Heat of formation + Delta-G solvation = 32.333061 kcal Electronic energy + Delta-G solvation = -27373.451627 eV Core-core repulsion = 23951.485731 eV Total energy + Delta-G solvation = -3421.965897 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.81267 -37.76001 -36.75441 -35.46985 -32.81748 -32.23252 -30.23540 -29.14919 -29.02883 -28.03426 -26.99825 -25.83936 -23.09995 -22.69814 -22.44626 -21.20297 -20.73004 -19.75402 -19.44096 -16.88034 -16.58046 -15.96705 -15.58588 -15.50875 -15.05209 -14.78167 -14.61076 -14.10758 -13.96436 -13.62768 -13.49714 -13.27100 -12.91969 -12.77390 -12.63172 -12.52460 -12.27447 -12.26739 -12.20371 -12.03837 -11.77795 -11.55474 -11.32022 -11.29130 -10.90581 -10.87956 -10.66262 -10.53060 -10.44657 -10.36216 -10.05812 -9.89693 -9.72559 -9.33792 -9.27077 -8.80781 -8.55278 -7.86566 -7.32869 -6.04367 -4.00978 1.30873 1.37799 3.27334 3.35480 3.37892 3.58310 3.77837 4.42077 4.52779 4.62080 4.83031 4.94326 5.00406 5.06323 5.13426 5.19920 5.22199 5.26822 5.34107 5.40959 5.43796 5.55924 5.59065 5.65039 5.70098 5.74530 5.77125 5.84269 5.93314 5.94935 5.99492 6.05105 6.08732 6.10509 6.16749 6.19589 6.27298 6.34142 6.37421 6.45578 6.46933 6.50107 6.55460 6.70671 6.75697 6.79225 6.93929 7.00135 7.02616 7.33325 7.64133 7.94701 8.08398 8.68486 9.06653 9.58088 11.08844 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.008909 B = 0.004840 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3142.164927 B = 5783.217956 C = 8277.134802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 C -0.146 4.146 4 C -0.105 4.105 5 C 0.064 3.936 6 N -0.527 5.527 7 C 0.158 3.842 8 C -0.505 4.505 9 H 0.081 0.919 10 C 0.069 3.931 11 N -0.901 5.901 12 Si 0.870 3.130 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.267 1.267 16 C 0.055 3.945 17 C 0.062 3.938 18 N -0.497 5.497 19 C 0.051 3.949 20 C -0.109 4.109 21 C -0.142 4.142 22 C -0.091 4.091 23 C -0.138 4.138 24 C -0.105 4.105 25 C -0.111 4.111 26 C 0.103 3.897 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.021 0.979 37 H 0.087 0.913 38 H -0.010 1.010 39 H 0.023 0.977 40 H 0.263 0.737 41 H 0.070 0.930 42 H 0.028 0.972 43 H 0.086 0.914 44 H 0.050 0.950 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.082 0.918 48 H 0.083 0.917 49 H 0.117 0.883 50 H 0.121 0.879 51 H 0.124 0.876 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.538 11.086 13.134 20.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 C -0.204 4.204 4 C -0.143 4.143 5 C -0.064 4.064 6 N -0.251 5.251 7 C 0.032 3.968 8 C -0.543 4.543 9 H 0.099 0.901 10 C -0.133 4.133 11 N -0.540 5.540 12 Si 0.697 3.303 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.192 1.192 16 C -0.074 4.074 17 C -0.063 4.063 18 N -0.215 5.215 19 C -0.077 4.077 20 C -0.148 4.148 21 C -0.145 4.145 22 C -0.110 4.110 23 C -0.157 4.157 24 C -0.123 4.123 25 C -0.131 4.131 26 C 0.006 3.994 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.039 0.961 37 H 0.105 0.895 38 H 0.008 0.992 39 H 0.041 0.959 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.046 0.954 43 H 0.104 0.896 44 H 0.069 0.931 45 H 0.105 0.895 46 H 0.105 0.895 47 H 0.101 0.899 48 H 0.101 0.899 49 H 0.135 0.865 50 H 0.139 0.861 51 H 0.142 0.858 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.317 10.961 12.955 19.860 hybrid contribution 1.093 0.232 0.307 1.159 sum -9.224 11.193 13.262 19.654 Atomic orbital electron populations 1.21810 0.95739 1.01539 1.00989 1.21111 0.95171 0.96114 0.99314 1.21874 1.01398 0.96227 1.00875 1.21603 0.96158 1.00408 0.96152 1.22045 0.93869 0.94999 0.95461 1.61849 1.27338 1.34843 1.01088 1.20270 0.84749 0.94943 0.96870 1.21042 0.94952 1.16221 1.22082 0.90105 1.24892 0.98696 0.94864 0.94824 1.69900 1.28238 1.25236 1.30619 0.86940 0.84645 0.79808 0.78860 1.20217 1.21221 1.19185 1.22107 1.00421 0.94471 0.90375 1.22296 1.02659 0.94355 0.87007 1.60138 1.18655 1.38195 1.04512 1.23146 0.96192 0.96689 0.91628 1.21686 0.93468 0.97976 1.01622 1.21019 0.95160 0.97846 1.00444 1.20351 0.92825 0.97922 0.99859 1.20987 0.99791 0.97089 0.97794 1.20905 0.94805 0.99630 0.96996 1.20571 0.94160 0.97338 1.01016 1.19591 0.89161 0.95044 0.95564 0.93120 0.93237 0.92733 0.91003 0.92416 0.93329 0.93192 0.91329 0.93086 0.96119 0.89452 0.99199 0.95869 0.92738 0.91222 0.95366 0.89604 0.93149 0.89484 0.89488 0.89928 0.89875 0.86490 0.86053 0.85831 0.85871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.19 37.16 0.34 -1.33 16 2 C -0.10 -1.33 2.92 -90.62 -0.26 -1.59 16 3 C -0.15 -1.80 8.95 37.16 0.33 -1.47 16 4 C -0.11 -1.66 4.74 -26.73 -0.13 -1.79 16 5 C 0.06 1.21 4.48 -3.83 -0.02 1.19 16 6 N -0.53 -10.88 4.38 -236.08 -1.03 -11.91 16 7 C 0.16 3.78 3.69 -4.98 -0.02 3.76 16 8 C -0.50 -14.16 8.84 -34.44 -0.30 -14.46 16 9 H 0.08 2.49 8.05 -52.49 -0.42 2.07 16 10 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 11 N -0.90 -27.44 13.96 55.43 0.77 -26.66 16 12 Si 0.87 21.39 27.57 -169.99 -4.69 16.70 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 15 H -0.27 -6.38 6.40 56.52 0.36 -6.02 16 16 C 0.06 0.97 4.64 -3.83 -0.02 0.95 16 17 C 0.06 1.03 4.72 -3.82 -0.02 1.01 16 18 N -0.50 -7.29 5.06 -169.01 -0.85 -8.15 16 19 C 0.05 0.60 7.00 -2.43 -0.02 0.59 16 20 C -0.11 -1.21 6.97 -26.61 -0.19 -1.40 16 21 C -0.14 -1.82 6.23 -104.04 -0.65 -2.46 16 22 C -0.09 -1.02 10.03 -39.68 -0.40 -1.42 16 23 C -0.14 -1.46 10.06 -39.54 -0.40 -1.85 16 24 C -0.10 -1.16 10.02 -39.68 -0.40 -1.56 16 25 C -0.11 -1.45 8.53 -39.27 -0.33 -1.79 16 26 C 0.10 1.45 5.29 -83.40 -0.44 1.01 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.76 6.65 -51.93 -0.35 0.41 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.05 0.77 6.92 -51.93 -0.36 0.41 16 36 H 0.02 0.37 6.62 -51.93 -0.34 0.03 16 37 H 0.09 1.88 7.11 -51.93 -0.37 1.51 16 38 H -0.01 -0.24 6.76 -51.93 -0.35 -0.59 16 39 H 0.02 0.55 5.62 -51.93 -0.29 0.26 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.07 1.14 4.11 -51.93 -0.21 0.93 16 42 H 0.03 0.52 8.12 -51.93 -0.42 0.09 16 43 H 0.09 1.52 5.99 -51.93 -0.31 1.21 16 44 H 0.05 0.89 8.06 -51.93 -0.42 0.47 16 45 H 0.09 0.99 7.60 -51.93 -0.39 0.60 16 46 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 50 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 51 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 52 H 0.12 1.57 7.16 -52.49 -0.38 1.20 16 LS Contribution 396.02 15.07 5.97 5.97 Total: -1.00 -30.47 396.02 -12.13 -42.61 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -9.29 Total: 2.18 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: -3.01 Total: -20.73 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: -1.12 Total: -46.72 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.69 Total: 16.70 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.47 -12.13 -42.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001615744834.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.941 kcal (2) G-P(sol) polarization free energy of solvation -30.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds