Wall clock time and date at job start Tue Mar 31 2020 11:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47246 * 2 1 4 4 C 1.53001 * 109.46965 * 119.99948 * 2 1 3 5 5 C 1.52995 * 109.47267 * 175.00064 * 4 2 1 6 6 N 1.46900 * 109.47433 * 183.99978 * 5 4 2 7 7 C 1.46896 * 111.00352 * 160.23403 * 6 5 4 8 8 C 1.50705 * 109.47372 * 288.16450 * 7 6 5 9 9 H 1.08002 * 119.99431 * 355.00121 * 8 7 6 10 10 C 1.37868 * 120.00153 * 174.99867 * 8 7 6 11 11 N 1.31519 * 119.99837 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 120.00204 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.46847 * 90.00004 * 12 10 8 14 14 H 1.48494 * 109.47139 * 209.99861 * 12 10 8 15 15 H 1.48494 * 109.47269 * 330.00320 * 12 10 8 16 16 C 1.46896 * 111.00551 * 284.19271 * 6 5 4 17 17 C 1.52996 * 109.47571 * 169.99243 * 16 6 5 18 18 N 1.46904 * 109.47115 * 179.97438 * 17 16 6 19 19 C 1.47908 * 110.99640 * 189.86739 * 18 17 16 20 20 C 1.54605 * 102.62635 * 265.41581 * 19 18 17 21 21 C 1.51575 * 102.82763 * 334.44277 * 20 19 18 22 22 C 1.37913 * 131.56417 * 196.19606 * 21 20 19 23 23 C 1.38295 * 120.08238 * 179.61580 * 22 21 20 24 24 C 1.38305 * 119.88664 * 0.02562 * 23 22 21 25 25 C 1.37910 * 120.26215 * 0.14225 * 24 23 22 26 26 C 1.38972 * 107.95156 * 16.04071 * 21 20 19 27 27 H 1.08995 * 109.47373 * 300.00710 * 1 2 3 28 28 H 1.09005 * 109.46592 * 60.00566 * 1 2 3 29 29 H 1.08995 * 109.47296 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47378 * 239.99978 * 2 1 3 31 31 H 1.09001 * 109.47560 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47243 * 299.99874 * 3 2 1 33 33 H 1.09001 * 109.46950 * 59.99716 * 3 2 1 34 34 H 1.09002 * 109.47125 * 54.99920 * 4 2 1 35 35 H 1.09003 * 109.47296 * 295.00112 * 4 2 1 36 36 H 1.08997 * 109.47200 * 64.00556 * 5 4 2 37 37 H 1.08995 * 109.47389 * 304.00112 * 5 4 2 38 38 H 1.09002 * 109.47251 * 48.16422 * 7 6 5 39 39 H 1.08997 * 109.47226 * 168.16827 * 7 6 5 40 40 H 0.97006 * 119.99463 * 180.02562 * 11 10 8 41 41 H 1.09006 * 109.46872 * 49.99368 * 16 6 5 42 42 H 1.09002 * 109.47199 * 289.99893 * 16 6 5 43 43 H 1.09006 * 109.46921 * 60.00155 * 17 16 6 44 44 H 1.08994 * 109.47570 * 300.00237 * 17 16 6 45 45 H 1.08999 * 110.78381 * 23.70370 * 19 18 17 46 46 H 1.09006 * 110.77677 * 146.94701 * 19 18 17 47 47 H 1.08997 * 110.73958 * 92.78051 * 20 19 18 48 48 H 1.09002 * 110.74354 * 216.10953 * 20 19 18 49 49 H 1.08008 * 119.95713 * 359.60293 * 22 21 20 50 50 H 1.08007 * 120.06021 * 179.97438 * 23 22 21 51 51 H 1.07995 * 119.86962 * 180.15745 * 24 23 22 52 52 H 1.07996 * 119.90037 * 180.19632 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5647 -0.8311 1.1881 6 7 4.0464 -1.6067 2.3389 7 6 5.3956 -2.1325 2.0918 8 6 5.3238 -3.2429 1.0754 9 1 4.3644 -3.5840 0.7153 10 6 6.4826 -3.8233 0.6054 11 7 6.4199 -4.7920 -0.2820 12 14 8.1420 -3.2327 1.2277 13 1 8.5292 -4.0187 2.4267 14 1 9.1629 -3.4158 0.1650 15 1 8.0530 -1.7945 1.5862 16 6 4.0117 -0.8025 3.5676 17 6 4.2778 -1.7038 4.7749 18 7 4.2437 -0.8993 6.0036 19 6 4.7256 -1.6815 7.1627 20 6 3.4139 -2.2333 7.7670 21 6 2.3820 -1.2198 7.3136 22 6 1.0961 -0.9681 7.7438 23 6 0.3532 0.0394 7.1560 24 6 0.9018 0.7943 6.1352 25 6 2.1860 0.5445 5.6990 26 6 2.9412 -0.4696 6.2860 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6053 -1.7198 1.2952 35 1 1.7515 -0.1583 2.1370 36 1 4.0022 0.1669 1.2139 37 1 3.8562 -1.3318 0.2648 38 1 6.0331 -1.3337 1.7127 39 1 5.8113 -2.5183 3.0226 40 1 7.2353 -5.2006 -0.6124 41 1 3.0310 -0.3379 3.6702 42 1 4.7770 -0.0280 3.5167 43 1 5.2585 -2.1684 4.6723 44 1 3.5125 -2.4782 4.8259 45 1 5.3739 -2.4952 6.8376 46 1 5.2424 -1.0384 7.8752 47 1 3.1885 -3.2206 7.3637 48 1 3.4729 -2.2638 8.8550 49 1 0.6686 -1.5588 8.5406 50 1 -0.6540 0.2359 7.4929 51 1 0.3223 1.5827 5.6781 52 1 2.6097 1.1396 4.9036 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001615744834.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:16 Heat of formation + Delta-G solvation = 15.339241 kcal Electronic energy + Delta-G solvation = -27374.188535 eV Core-core repulsion = 23951.485731 eV Total energy + Delta-G solvation = -3422.702804 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.78673 -39.23302 -37.72481 -36.75807 -34.72462 -33.54893 -31.31383 -30.74652 -30.08524 -29.30201 -27.97880 -27.33721 -24.31593 -24.02976 -23.88540 -22.18837 -21.79006 -21.23099 -20.73094 -19.02364 -17.60186 -17.02583 -16.92012 -16.49349 -16.37917 -16.18453 -15.88899 -15.62580 -15.30521 -14.87012 -14.65475 -14.59362 -14.27865 -14.03299 -13.88592 -13.78409 -13.62332 -13.60605 -13.24898 -13.04044 -12.94250 -12.85613 -12.51988 -12.42203 -12.38462 -12.26005 -11.94806 -11.86322 -11.79285 -11.70679 -11.57472 -11.46122 -11.31590 -11.21045 -10.76157 -10.35899 -9.69426 -9.02629 -8.86207 -8.28344 -6.30613 0.40285 0.48440 1.32066 1.33928 1.44163 2.32811 2.53661 2.86444 3.04646 3.26580 3.62911 3.82464 3.92133 3.99082 4.05012 4.07979 4.14729 4.17349 4.21852 4.29146 4.34301 4.48281 4.54924 4.57666 4.63925 4.67970 4.72717 4.74976 4.79545 4.81826 4.84984 4.90095 4.90676 4.98029 4.98898 5.01588 5.04699 5.06886 5.19940 5.22017 5.25013 5.38203 5.47533 5.52887 5.53419 5.55124 5.56140 5.62560 5.85093 5.92028 6.03943 6.33965 6.38907 6.65690 6.75762 7.32709 8.88467 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.008909 B = 0.004840 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3142.164927 B = 5783.217956 C = 8277.134802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.098 4.098 3 C -0.142 4.142 4 C -0.093 4.093 5 C 0.068 3.932 6 N -0.541 5.541 7 C 0.170 3.830 8 C -0.509 4.509 9 H 0.036 0.964 10 C 0.011 3.989 11 N -0.947 5.947 12 Si 0.940 3.060 13 H -0.263 1.263 14 H -0.281 1.281 15 H -0.255 1.255 16 C 0.064 3.936 17 C 0.073 3.927 18 N -0.504 5.504 19 C 0.046 3.954 20 C -0.105 4.105 21 C -0.155 4.155 22 C -0.098 4.098 23 C -0.134 4.134 24 C -0.108 4.108 25 C -0.126 4.126 26 C 0.071 3.929 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.047 0.953 35 H 0.065 0.935 36 H 0.032 0.968 37 H 0.050 0.950 38 H -0.015 1.015 39 H 0.030 0.970 40 H 0.266 0.734 41 H 0.084 0.916 42 H 0.025 0.975 43 H 0.072 0.928 44 H 0.033 0.967 45 H 0.087 0.913 46 H 0.101 0.899 47 H 0.077 0.923 48 H 0.106 0.894 49 H 0.139 0.861 50 H 0.151 0.849 51 H 0.148 0.852 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.452 13.186 15.327 23.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.117 4.117 3 C -0.200 4.200 4 C -0.131 4.131 5 C -0.060 4.060 6 N -0.265 5.265 7 C 0.043 3.957 8 C -0.547 4.547 9 H 0.054 0.946 10 C -0.186 4.186 11 N -0.588 5.588 12 Si 0.764 3.236 13 H -0.188 1.188 14 H -0.207 1.207 15 H -0.179 1.179 16 C -0.064 4.064 17 C -0.053 4.053 18 N -0.222 5.222 19 C -0.081 4.081 20 C -0.142 4.142 21 C -0.157 4.157 22 C -0.116 4.116 23 C -0.152 4.152 24 C -0.126 4.126 25 C -0.146 4.146 26 C -0.025 4.025 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.050 0.950 37 H 0.069 0.931 38 H 0.003 0.997 39 H 0.048 0.952 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.043 0.957 43 H 0.090 0.910 44 H 0.052 0.948 45 H 0.106 0.894 46 H 0.119 0.881 47 H 0.095 0.905 48 H 0.125 0.875 49 H 0.157 0.843 50 H 0.169 0.831 51 H 0.166 0.834 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.255 13.076 15.169 22.973 hybrid contribution 1.226 -0.421 -0.368 1.348 sum -10.028 12.654 14.801 21.904 Atomic orbital electron populations 1.21763 0.93777 1.01631 1.02402 1.21100 0.96798 0.96631 0.97166 1.21835 1.00501 0.95256 1.02366 1.21492 0.93565 0.99896 0.98125 1.22010 0.96099 0.94577 0.93287 1.61796 1.25364 1.36533 1.02835 1.20003 0.86615 0.93441 0.95623 1.21205 0.93276 1.17324 1.22916 0.94578 1.25771 1.03030 0.94861 0.94919 1.70052 1.29594 1.26867 1.32291 0.85820 0.79162 0.79962 0.78670 1.18775 1.20685 1.17859 1.22084 1.01094 0.94080 0.89168 1.22042 1.01117 0.93981 0.88120 1.60153 1.19662 1.38103 1.04316 1.23275 0.96832 0.96877 0.91083 1.21680 0.92435 0.97200 1.02931 1.21303 0.96090 0.98053 1.00292 1.20713 0.92310 0.98280 1.00339 1.21404 1.00906 0.96047 0.96867 1.21236 0.94164 1.00157 0.97029 1.20749 0.95103 0.97427 1.01331 1.19797 0.89309 0.96375 0.97002 0.91870 0.91630 0.93363 0.92753 0.93785 0.91678 0.91865 0.93369 0.91647 0.94996 0.93136 0.99730 0.95228 0.92483 0.89777 0.95654 0.90972 0.94816 0.89432 0.88118 0.90472 0.87547 0.84290 0.83128 0.83406 0.86233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 9.19 71.98 0.66 -2.34 16 2 C -0.10 -2.61 2.92 -10.80 -0.03 -2.64 16 3 C -0.14 -3.28 8.95 71.98 0.64 -2.64 16 4 C -0.09 -2.96 4.74 30.59 0.14 -2.82 16 5 C 0.07 2.65 4.48 86.30 0.39 3.04 16 6 N -0.54 -22.97 4.38 -900.83 -3.95 -26.92 16 7 C 0.17 8.34 3.69 85.56 0.32 8.65 16 8 C -0.51 -29.84 8.84 25.60 0.23 -29.62 16 9 H 0.04 2.38 8.05 -2.91 -0.02 2.36 16 10 C 0.01 0.67 5.47 84.65 0.46 1.14 16 11 N -0.95 -59.70 13.96 21.44 0.30 -59.41 16 12 Si 0.94 44.57 27.57 68.60 1.89 46.46 16 13 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 14 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 15 H -0.25 -11.47 6.40 99.48 0.64 -10.83 16 16 C 0.06 2.26 4.64 86.30 0.40 2.66 16 17 C 0.07 2.47 4.72 86.30 0.41 2.87 16 18 N -0.50 -14.53 5.06 -688.63 -3.48 -18.01 16 19 C 0.05 1.05 7.00 86.66 0.61 1.66 16 20 C -0.10 -2.16 6.97 30.67 0.21 -1.95 16 21 C -0.15 -3.70 6.23 -19.49 -0.12 -3.83 16 22 C -0.10 -1.94 10.03 22.21 0.22 -1.72 16 23 C -0.13 -2.39 10.06 22.30 0.22 -2.16 16 24 C -0.11 -2.10 10.02 22.21 0.22 -1.88 16 25 C -0.13 -3.12 8.53 22.47 0.19 -2.93 16 26 C 0.07 1.93 5.29 38.29 0.20 2.14 16 27 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.04 1.12 6.65 -2.39 -0.02 1.11 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.06 1.89 6.92 -2.39 -0.02 1.88 16 36 H 0.03 1.16 6.62 -2.39 -0.02 1.15 16 37 H 0.05 2.32 7.11 -2.39 -0.02 2.30 16 38 H -0.01 -0.75 6.76 -2.39 -0.02 -0.76 16 39 H 0.03 1.42 5.62 -2.39 -0.01 1.41 16 40 H 0.27 15.64 8.31 -92.70 -0.77 14.87 16 41 H 0.08 2.72 4.11 -2.38 -0.01 2.71 16 42 H 0.03 0.92 8.12 -2.39 -0.02 0.90 16 43 H 0.07 2.59 5.99 -2.38 -0.01 2.57 16 44 H 0.03 1.22 8.06 -2.39 -0.02 1.20 16 45 H 0.09 1.95 7.60 -2.39 -0.02 1.94 16 46 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 47 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 48 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 50 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 51 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 52 H 0.12 2.92 7.16 -2.91 -0.02 2.90 16 Total: -1.00 -68.52 396.02 0.94 -67.59 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.80 Total: 22.65 kcal Atomic # 6 Polarization: -37.74 SS G_CDS: 5.38 Total: -32.36 kcal Atomic # 7 Polarization: -97.20 SS G_CDS: -7.13 Total: -104.33 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.89 Total: 46.46 kcal Total: -68.52 0.94 -67.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001615744834.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.925 kcal (2) G-P(sol) polarization free energy of solvation -68.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds