Wall clock time and date at job start Tue Mar 31 2020 11:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52997 * 109.47872 * 2 1 4 4 H 1.08999 * 108.38412 * 58.97066 * 3 2 1 5 5 C 1.51624 * 108.56148 * 301.23249 * 3 2 1 6 6 N 1.46982 * 110.99503 * 171.52123 * 5 3 2 7 7 C 1.46898 * 110.99948 * 323.59591 * 6 5 3 8 8 C 1.40255 * 109.97374 * 86.82191 * 6 5 3 9 9 C 1.39012 * 119.77666 * 109.48941 * 8 6 5 10 10 C 1.38161 * 119.58322 * 180.19372 * 9 8 6 11 11 C 1.38306 * 120.17961 * 359.97438 * 10 9 8 12 12 C 1.38380 * 120.18797 * 359.94916 * 11 10 9 13 13 C 1.37998 * 120.18737 * 289.50993 * 8 6 5 14 14 C 1.51466 * 119.75489 * 359.40536 * 13 8 6 15 15 N 1.45678 * 108.57096 * 176.72376 * 3 2 1 16 16 C 1.46900 * 110.99871 * 314.02288 * 15 3 2 17 17 C 1.53005 * 109.46824 * 88.82069 * 16 15 3 18 18 H 1.09001 * 109.47213 * 305.19161 * 17 16 15 19 19 C 1.53003 * 109.47398 * 65.19266 * 17 16 15 20 20 C 1.53006 * 109.46783 * 185.19212 * 17 16 15 21 21 C 1.50700 * 109.46839 * 174.99598 * 20 17 16 22 22 H 1.08003 * 120.00318 * 0.02562 * 21 20 17 23 23 C 1.37881 * 119.99880 * 180.02562 * 21 20 17 24 24 N 1.31513 * 119.99669 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99878 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46976 * 180.02562 * 25 23 21 27 27 H 1.48498 * 109.47137 * 299.99490 * 25 23 21 28 28 H 1.48494 * 109.47643 * 60.00020 * 25 23 21 29 29 H 1.09002 * 109.47365 * 67.04310 * 1 2 3 30 30 H 1.08999 * 109.47818 * 187.05111 * 1 2 3 31 31 H 1.09004 * 109.46946 * 307.05247 * 1 2 3 32 32 H 1.09011 * 109.47095 * 239.99625 * 2 1 3 33 33 H 1.09005 * 109.47455 * 120.00305 * 2 1 3 34 34 H 1.08999 * 109.17284 * 291.90753 * 5 3 2 35 35 H 1.08998 * 109.17953 * 51.12925 * 5 3 2 36 36 H 1.09001 * 109.47101 * 32.24437 * 7 6 5 37 37 H 1.09001 * 109.47259 * 152.24753 * 7 6 5 38 38 H 1.08998 * 109.46575 * 272.24806 * 7 6 5 39 39 H 1.08000 * 120.20516 * 0.17356 * 9 8 6 40 40 H 1.08000 * 119.90931 * 180.02562 * 10 9 8 41 41 H 1.08001 * 119.90714 * 179.97438 * 11 10 9 42 42 H 1.08003 * 120.16649 * 179.97438 * 12 11 10 43 43 H 1.09000 * 109.67994 * 309.57484 * 14 13 8 44 44 H 1.09009 * 109.68062 * 189.02256 * 14 13 8 45 45 H 1.08997 * 109.47444 * 328.82221 * 16 15 3 46 46 H 1.09002 * 109.47002 * 208.81138 * 16 15 3 47 47 H 1.09001 * 109.46889 * 65.01569 * 19 17 16 48 48 H 1.08996 * 109.46620 * 185.01450 * 19 17 16 49 49 H 1.08993 * 109.46940 * 305.02032 * 19 17 16 50 50 H 1.09001 * 109.47155 * 54.99856 * 20 17 16 51 51 H 1.08992 * 109.47180 * 294.99963 * 20 17 16 52 52 H 0.97002 * 119.99896 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6520 1.9443 0.8863 5 6 1.4984 2.1459 -1.2291 6 7 1.7874 3.5863 -1.1816 7 6 1.6910 4.0976 0.1922 8 6 3.0560 3.8385 -1.7239 9 6 3.1667 4.4835 -2.9504 10 6 4.4183 4.7263 -3.4828 11 6 5.5535 4.3305 -2.7991 12 6 5.4421 3.6900 -1.5775 13 6 4.1915 3.4481 -1.0438 14 6 4.0639 2.7575 0.2982 15 7 3.4945 1.4201 0.0789 16 6 3.9514 0.4780 1.1093 17 6 4.1189 -0.9117 0.4915 18 1 3.1880 -1.2093 0.0087 19 6 5.2429 -0.8766 -0.5460 20 6 4.4690 -1.9188 1.5889 21 6 4.5131 -3.3061 1.0019 22 1 4.3121 -3.4546 -0.0488 23 6 4.8102 -4.3858 1.8063 24 7 5.0545 -4.2050 3.0858 25 14 4.8657 -6.1053 1.0786 26 1 5.2041 -7.0830 2.1440 27 1 3.5392 -6.4418 0.5020 28 1 5.8971 -6.1584 0.0117 29 1 -0.3634 0.4008 -0.9463 30 1 -0.3635 -1.0198 0.1261 31 1 -0.3633 0.6192 0.8202 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.9593 1.7175 -2.1191 35 1 0.4196 1.9988 -1.2796 36 1 1.9938 3.3185 0.8919 37 1 2.3456 4.9618 0.3050 38 1 0.6620 4.3916 0.3989 39 1 2.2799 4.7924 -3.4838 40 1 4.5104 5.2274 -4.4351 41 1 6.5296 4.5222 -3.2196 42 1 6.3288 3.3806 -1.0441 43 1 3.4053 3.3350 0.9470 44 1 5.0474 2.6668 0.7594 45 1 3.2155 0.4325 1.9120 46 1 4.9072 0.8145 1.5111 47 1 6.1898 -0.6664 -0.0487 48 1 5.3031 -1.8417 -1.0491 49 1 5.0365 -0.0969 -1.2790 50 1 3.7124 -1.8798 2.3726 51 1 5.4428 -1.6718 2.0114 52 1 5.2639 -4.9646 3.6517 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001621135168.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:53 Heat of formation + Delta-G solvation = 66.881760 kcal Electronic energy + Delta-G solvation = -28352.339286 eV Core-core repulsion = 24931.871533 eV Total energy + Delta-G solvation = -3420.467753 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.21497 -38.41784 -36.46239 -34.23469 -33.92756 -32.11663 -30.94895 -30.02486 -28.23157 -27.25278 -26.46410 -25.72058 -24.42567 -23.21709 -22.35120 -21.83919 -20.70215 -19.53815 -18.86974 -17.17744 -16.34587 -16.31182 -15.65252 -15.60196 -15.25934 -14.77761 -14.49092 -14.09559 -14.01493 -13.75205 -13.46526 -13.35290 -13.12145 -12.70296 -12.50656 -12.23050 -12.18870 -12.01176 -11.72173 -11.69154 -11.51099 -11.30558 -11.26274 -11.08926 -10.88844 -10.83711 -10.75539 -10.57678 -10.44887 -10.27451 -10.19786 -9.43011 -9.07407 -8.93611 -8.81266 -8.76362 -8.43547 -8.30706 -7.82864 -5.96474 -3.97222 1.29355 1.39168 3.34930 3.39289 3.41942 3.62527 3.82562 4.09090 4.49323 4.71193 4.82592 4.87987 4.96743 4.99542 5.05352 5.17074 5.21260 5.35027 5.39456 5.40216 5.45257 5.48144 5.59436 5.60366 5.67388 5.71469 5.73114 5.83484 5.86267 5.95577 6.02353 6.05317 6.17976 6.23432 6.34213 6.38415 6.38869 6.48588 6.54204 6.59277 6.60299 6.77760 6.78191 6.81033 7.05032 7.20007 7.22865 7.31116 7.42708 7.45115 7.70998 7.87784 8.04255 8.48904 9.09159 9.66166 11.15040 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017365 B = 0.003602 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.080817 B = 7771.948971 C = 8519.443821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.129 4.129 3 C 0.057 3.943 4 H 0.044 0.956 5 C 0.060 3.940 6 N -0.497 5.497 7 C -0.004 4.004 8 C 0.091 3.909 9 C -0.100 4.100 10 C -0.122 4.122 11 C -0.125 4.125 12 C -0.100 4.100 13 C -0.090 4.090 14 C 0.069 3.931 15 N -0.530 5.530 16 C 0.065 3.935 17 C -0.093 4.093 18 H 0.076 0.924 19 C -0.120 4.120 20 C 0.028 3.972 21 C -0.510 4.510 22 H 0.055 0.945 23 C 0.056 3.944 24 N -0.898 5.898 25 Si 0.888 3.112 26 H -0.288 1.288 27 H -0.277 1.277 28 H -0.277 1.277 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.125 0.875 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.064 0.936 44 H 0.080 0.920 45 H 0.037 0.963 46 H 0.062 0.938 47 H 0.034 0.966 48 H 0.049 0.951 49 H 0.042 0.958 50 H 0.010 0.990 51 H 0.012 0.988 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.431 19.057 -8.559 21.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.167 4.167 3 C -0.053 4.053 4 H 0.062 0.938 5 C -0.066 4.066 6 N -0.216 5.216 7 C -0.151 4.151 8 C -0.003 4.003 9 C -0.119 4.119 10 C -0.141 4.141 11 C -0.143 4.143 12 C -0.119 4.119 13 C -0.093 4.093 14 C -0.058 4.058 15 N -0.254 5.254 16 C -0.062 4.062 17 C -0.111 4.111 18 H 0.094 0.906 19 C -0.178 4.178 20 C -0.009 4.009 21 C -0.548 4.548 22 H 0.073 0.927 23 C -0.145 4.145 24 N -0.538 5.538 25 Si 0.716 3.284 26 H -0.214 1.214 27 H -0.203 1.203 28 H -0.203 1.203 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.143 0.857 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.082 0.918 44 H 0.099 0.901 45 H 0.055 0.945 46 H 0.080 0.920 47 H 0.054 0.946 48 H 0.068 0.932 49 H 0.061 0.939 50 H 0.029 0.971 51 H 0.031 0.969 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.616 19.048 -9.099 21.845 hybrid contribution 0.510 -1.172 0.946 1.590 sum -5.107 17.876 -8.153 20.301 Atomic orbital electron populations 1.21874 0.96123 1.01902 1.01142 1.22080 0.94985 0.95168 1.04488 1.21777 0.87946 0.97436 0.98115 0.93833 1.22231 1.01235 0.84725 0.98429 1.60578 1.25285 1.15558 1.20198 1.23081 1.02397 1.00187 0.89405 1.18711 0.88221 0.98525 0.94859 1.20988 0.97460 0.98663 0.94779 1.21043 0.92342 1.00828 0.99861 1.21140 0.98473 0.99386 0.95321 1.20983 0.96680 0.98447 0.95813 1.20391 0.93558 0.97895 0.97411 1.21821 1.00887 0.89990 0.93142 1.61092 1.07832 1.06706 1.49791 1.22399 0.98666 0.93723 0.91390 1.21630 0.99584 0.91954 0.97963 0.90601 1.21547 0.97565 1.00298 0.98373 1.19120 0.96376 0.92668 0.92779 1.21188 1.46743 0.91779 0.95126 0.92682 1.25006 0.95626 0.98999 0.94840 1.69954 1.48370 1.30828 1.04627 0.86719 0.78500 0.84456 0.78693 1.21417 1.20311 1.20298 0.92788 0.92303 0.93201 0.90451 0.89540 0.90194 0.89271 0.91598 0.91885 0.91232 0.85695 0.86181 0.86294 0.86092 0.91807 0.90110 0.94505 0.91958 0.94637 0.93165 0.93906 0.97135 0.96935 0.93103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.30 37.15 0.35 -1.43 16 2 C -0.13 -1.82 3.75 -26.74 -0.10 -1.92 16 3 C 0.06 0.74 1.42 -69.07 -0.10 0.64 16 4 H 0.04 0.57 5.56 -51.93 -0.29 0.28 16 5 C 0.06 0.74 5.12 -4.48 -0.02 0.71 16 6 N -0.50 -5.93 5.06 -179.78 -0.91 -6.84 16 7 C 0.00 -0.04 8.00 60.06 0.48 0.44 16 8 C 0.09 1.14 4.27 -83.80 -0.36 0.78 16 9 C -0.10 -1.14 9.99 -39.32 -0.39 -1.53 16 10 C -0.12 -1.26 10.04 -39.58 -0.40 -1.65 16 11 C -0.13 -1.33 10.04 -39.50 -0.40 -1.73 16 12 C -0.10 -1.20 9.69 -39.58 -0.38 -1.58 16 13 C -0.09 -1.15 5.21 -104.38 -0.54 -1.69 16 14 C 0.07 0.89 5.16 -4.55 -0.02 0.86 16 15 N -0.53 -7.65 3.55 -229.33 -0.81 -8.47 16 16 C 0.06 1.08 4.03 -3.82 -0.02 1.07 16 17 C -0.09 -1.84 1.80 -90.61 -0.16 -2.01 16 18 H 0.08 1.52 4.29 -51.93 -0.22 1.30 16 19 C -0.12 -2.36 8.87 37.16 0.33 -2.03 16 20 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 21 C -0.51 -14.15 8.47 -34.44 -0.29 -14.44 16 22 H 0.05 1.50 7.06 -52.48 -0.37 1.13 16 23 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 24 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 25 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 29 H 0.05 0.56 6.54 -51.93 -0.34 0.22 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 1.19 7.06 -51.92 -0.37 0.82 16 33 H 0.09 1.42 5.12 -51.93 -0.27 1.16 16 34 H 0.08 1.10 7.77 -51.93 -0.40 0.70 16 35 H 0.09 0.99 5.96 -51.93 -0.31 0.68 16 36 H 0.07 0.74 2.64 -51.93 -0.14 0.60 16 37 H 0.06 0.66 7.57 -51.93 -0.39 0.26 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 40 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.12 1.33 7.98 -52.48 -0.42 0.91 16 43 H 0.06 0.77 4.25 -51.93 -0.22 0.55 16 44 H 0.08 1.03 7.07 -51.92 -0.37 0.66 16 45 H 0.04 0.63 6.96 -51.93 -0.36 0.26 16 46 H 0.06 1.05 7.23 -51.93 -0.38 0.67 16 47 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 48 H 0.05 1.05 7.10 -51.93 -0.37 0.68 16 49 H 0.04 0.78 7.63 -51.93 -0.40 0.38 16 50 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 51 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 52 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 376.91 15.07 5.68 5.68 Total: -1.00 -29.60 376.91 -11.12 -40.72 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -8.54 Total: 1.81 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: -2.25 Total: -23.44 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: -0.99 Total: -41.47 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.60 -11.12 -40.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001621135168.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.605 kcal (2) G-P(sol) polarization free energy of solvation -29.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds