Wall clock time and date at job start Tue Mar 31 2020 11:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52997 * 109.47872 * 2 1 4 4 H 1.08999 * 108.38412 * 58.97066 * 3 2 1 5 5 C 1.51624 * 108.56148 * 301.23249 * 3 2 1 6 6 N 1.46982 * 110.99503 * 171.52123 * 5 3 2 7 7 C 1.46898 * 110.99948 * 323.59591 * 6 5 3 8 8 C 1.40255 * 109.97374 * 86.82191 * 6 5 3 9 9 C 1.39012 * 119.77666 * 109.48941 * 8 6 5 10 10 C 1.38161 * 119.58322 * 180.19372 * 9 8 6 11 11 C 1.38306 * 120.17961 * 359.97438 * 10 9 8 12 12 C 1.38380 * 120.18797 * 359.94916 * 11 10 9 13 13 C 1.37998 * 120.18737 * 289.50993 * 8 6 5 14 14 C 1.51466 * 119.75489 * 359.40536 * 13 8 6 15 15 N 1.45678 * 108.57096 * 176.72376 * 3 2 1 16 16 C 1.46900 * 110.99871 * 314.02288 * 15 3 2 17 17 C 1.53005 * 109.46824 * 88.82069 * 16 15 3 18 18 H 1.09001 * 109.47213 * 305.19161 * 17 16 15 19 19 C 1.53003 * 109.47398 * 65.19266 * 17 16 15 20 20 C 1.53006 * 109.46783 * 185.19212 * 17 16 15 21 21 C 1.50700 * 109.46839 * 174.99598 * 20 17 16 22 22 H 1.08003 * 120.00318 * 0.02562 * 21 20 17 23 23 C 1.37881 * 119.99880 * 180.02562 * 21 20 17 24 24 N 1.31513 * 119.99669 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99878 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46976 * 180.02562 * 25 23 21 27 27 H 1.48498 * 109.47137 * 299.99490 * 25 23 21 28 28 H 1.48494 * 109.47643 * 60.00020 * 25 23 21 29 29 H 1.09002 * 109.47365 * 67.04310 * 1 2 3 30 30 H 1.08999 * 109.47818 * 187.05111 * 1 2 3 31 31 H 1.09004 * 109.46946 * 307.05247 * 1 2 3 32 32 H 1.09011 * 109.47095 * 239.99625 * 2 1 3 33 33 H 1.09005 * 109.47455 * 120.00305 * 2 1 3 34 34 H 1.08999 * 109.17284 * 291.90753 * 5 3 2 35 35 H 1.08998 * 109.17953 * 51.12925 * 5 3 2 36 36 H 1.09001 * 109.47101 * 32.24437 * 7 6 5 37 37 H 1.09001 * 109.47259 * 152.24753 * 7 6 5 38 38 H 1.08998 * 109.46575 * 272.24806 * 7 6 5 39 39 H 1.08000 * 120.20516 * 0.17356 * 9 8 6 40 40 H 1.08000 * 119.90931 * 180.02562 * 10 9 8 41 41 H 1.08001 * 119.90714 * 179.97438 * 11 10 9 42 42 H 1.08003 * 120.16649 * 179.97438 * 12 11 10 43 43 H 1.09000 * 109.67994 * 309.57484 * 14 13 8 44 44 H 1.09009 * 109.68062 * 189.02256 * 14 13 8 45 45 H 1.08997 * 109.47444 * 328.82221 * 16 15 3 46 46 H 1.09002 * 109.47002 * 208.81138 * 16 15 3 47 47 H 1.09001 * 109.46889 * 65.01569 * 19 17 16 48 48 H 1.08996 * 109.46620 * 185.01450 * 19 17 16 49 49 H 1.08993 * 109.46940 * 305.02032 * 19 17 16 50 50 H 1.09001 * 109.47155 * 54.99856 * 20 17 16 51 51 H 1.08992 * 109.47180 * 294.99963 * 20 17 16 52 52 H 0.97002 * 119.99896 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6520 1.9443 0.8863 5 6 1.4984 2.1459 -1.2291 6 7 1.7874 3.5863 -1.1816 7 6 1.6910 4.0976 0.1922 8 6 3.0560 3.8385 -1.7239 9 6 3.1667 4.4835 -2.9504 10 6 4.4183 4.7263 -3.4828 11 6 5.5535 4.3305 -2.7991 12 6 5.4421 3.6900 -1.5775 13 6 4.1915 3.4481 -1.0438 14 6 4.0639 2.7575 0.2982 15 7 3.4945 1.4201 0.0789 16 6 3.9514 0.4780 1.1093 17 6 4.1189 -0.9117 0.4915 18 1 3.1880 -1.2093 0.0087 19 6 5.2429 -0.8766 -0.5460 20 6 4.4690 -1.9188 1.5889 21 6 4.5131 -3.3061 1.0019 22 1 4.3121 -3.4546 -0.0488 23 6 4.8102 -4.3858 1.8063 24 7 5.0545 -4.2050 3.0858 25 14 4.8657 -6.1053 1.0786 26 1 5.2041 -7.0830 2.1440 27 1 3.5392 -6.4418 0.5020 28 1 5.8971 -6.1584 0.0117 29 1 -0.3634 0.4008 -0.9463 30 1 -0.3635 -1.0198 0.1261 31 1 -0.3633 0.6192 0.8202 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.9593 1.7175 -2.1191 35 1 0.4196 1.9988 -1.2796 36 1 1.9938 3.3185 0.8919 37 1 2.3456 4.9618 0.3050 38 1 0.6620 4.3916 0.3989 39 1 2.2799 4.7924 -3.4838 40 1 4.5104 5.2274 -4.4351 41 1 6.5296 4.5222 -3.2196 42 1 6.3288 3.3806 -1.0441 43 1 3.4053 3.3350 0.9470 44 1 5.0474 2.6668 0.7594 45 1 3.2155 0.4325 1.9120 46 1 4.9072 0.8145 1.5111 47 1 6.1898 -0.6664 -0.0487 48 1 5.3031 -1.8417 -1.0491 49 1 5.0365 -0.0969 -1.2790 50 1 3.7124 -1.8798 2.3726 51 1 5.4428 -1.6718 2.0114 52 1 5.2639 -4.9646 3.6517 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001621135168.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:52 Heat of formation + Delta-G solvation = 51.138391 kcal Electronic energy + Delta-G solvation = -28353.021969 eV Core-core repulsion = 24931.871533 eV Total energy + Delta-G solvation = -3421.150436 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.20173 -39.47979 -37.64310 -35.83098 -34.96118 -34.03358 -32.00052 -30.90749 -29.22993 -28.97915 -27.92432 -26.69408 -25.89583 -24.46267 -23.81383 -22.80622 -21.63174 -20.71699 -20.39167 -18.47694 -18.06739 -17.38847 -16.73458 -16.55854 -16.46012 -16.25786 -15.83308 -15.38389 -15.04832 -14.91334 -14.70417 -14.48051 -14.35337 -14.09072 -13.81361 -13.47371 -13.30444 -13.18368 -13.00527 -12.86680 -12.78789 -12.76791 -12.66045 -12.50591 -12.32712 -12.19767 -12.11556 -11.90843 -11.83757 -11.62731 -11.55573 -11.26349 -10.90896 -10.76371 -10.49779 -9.73238 -9.69003 -9.37484 -8.94292 -8.16491 -6.25009 0.42492 0.52240 1.39514 1.41823 1.49423 2.41834 2.66719 2.93327 3.04830 3.17005 3.73341 3.82684 3.87962 3.99992 4.02409 4.12104 4.20944 4.30071 4.32638 4.36146 4.44638 4.47530 4.54781 4.57143 4.63467 4.68668 4.70027 4.75999 4.79516 4.83177 4.90849 4.92841 4.99815 5.05739 5.11140 5.18704 5.24778 5.29695 5.33272 5.41048 5.48415 5.49099 5.51747 5.58753 5.65203 5.70629 5.82991 5.88458 5.92440 5.95098 6.09157 6.23845 6.34427 6.48117 6.90761 7.43085 8.95242 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017365 B = 0.003602 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.080817 B = 7771.948971 C = 8519.443821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 C 0.061 3.939 4 H 0.051 0.949 5 C 0.069 3.931 6 N -0.496 5.496 7 C -0.002 4.002 8 C 0.076 3.924 9 C -0.108 4.108 10 C -0.119 4.119 11 C -0.127 4.127 12 C -0.114 4.114 13 C -0.105 4.105 14 C 0.070 3.930 15 N -0.534 5.534 16 C 0.079 3.921 17 C -0.081 4.081 18 H 0.077 0.923 19 C -0.108 4.108 20 C 0.037 3.963 21 C -0.525 4.525 22 H 0.058 0.942 23 C 0.000 4.000 24 N -0.935 5.935 25 Si 0.956 3.044 26 H -0.285 1.285 27 H -0.267 1.267 28 H -0.269 1.269 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.136 0.864 40 H 0.147 0.853 41 H 0.141 0.859 42 H 0.124 0.876 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.031 0.969 46 H 0.059 0.941 47 H 0.029 0.971 48 H 0.033 0.967 49 H 0.058 0.942 50 H -0.015 1.015 51 H -0.016 1.016 52 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.153 20.185 -10.463 23.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.164 4.164 3 C -0.048 4.048 4 H 0.068 0.932 5 C -0.057 4.057 6 N -0.215 5.215 7 C -0.148 4.148 8 C -0.018 4.018 9 C -0.127 4.127 10 C -0.137 4.137 11 C -0.145 4.145 12 C -0.133 4.133 13 C -0.108 4.108 14 C -0.057 4.057 15 N -0.258 5.258 16 C -0.048 4.048 17 C -0.100 4.100 18 H 0.095 0.905 19 C -0.166 4.166 20 C -0.001 4.001 21 C -0.563 4.563 22 H 0.076 0.924 23 C -0.197 4.197 24 N -0.576 5.576 25 Si 0.781 3.219 26 H -0.210 1.210 27 H -0.192 1.192 28 H -0.194 1.194 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.123 0.877 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.154 0.846 40 H 0.165 0.835 41 H 0.159 0.841 42 H 0.142 0.858 43 H 0.092 0.908 44 H 0.096 0.904 45 H 0.049 0.951 46 H 0.078 0.922 47 H 0.048 0.952 48 H 0.052 0.948 49 H 0.077 0.923 50 H 0.003 0.997 51 H 0.003 0.997 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.343 20.195 -11.019 23.864 hybrid contribution 0.754 -1.456 1.524 2.238 sum -5.590 18.739 -9.495 21.738 Atomic orbital electron populations 1.21824 0.94023 1.02032 1.02547 1.21957 0.96867 0.95379 1.02173 1.21795 0.87024 0.96902 0.99120 0.93165 1.22149 1.01806 0.84913 0.96865 1.60655 1.25119 1.14963 1.20786 1.23078 1.03317 0.99889 0.88545 1.18902 0.88264 0.99169 0.95493 1.21223 0.98478 0.98494 0.94470 1.21381 0.91723 0.99999 1.00647 1.21439 0.99782 0.98568 0.94746 1.21172 0.96565 0.98975 0.96618 1.20396 0.94208 0.98822 0.97383 1.21842 1.00833 0.89060 0.93958 1.61006 1.08904 1.07350 1.48564 1.22063 0.98561 0.92666 0.91541 1.21437 0.99602 0.92611 0.96354 0.90531 1.21416 0.97042 0.99858 0.98248 1.18982 0.93971 0.93603 0.93542 1.21576 1.46323 0.93075 0.95351 0.92406 1.25894 0.95216 1.03405 0.95180 1.70090 1.49374 1.32097 1.06040 0.85632 0.79007 0.79196 0.78035 1.21026 1.19226 1.19422 0.90985 0.92810 0.92173 0.92030 0.92492 0.91756 0.87714 0.92303 0.91752 0.89800 0.84628 0.83529 0.84144 0.85802 0.90831 0.90374 0.95092 0.92226 0.95208 0.94767 0.92267 0.99651 0.99729 0.93015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 9.30 71.98 0.67 -2.57 16 2 C -0.13 -3.52 3.75 30.59 0.11 -3.41 16 3 C 0.06 1.55 1.42 44.69 0.06 1.61 16 4 H 0.05 1.25 5.56 -2.39 -0.01 1.23 16 5 C 0.07 1.58 5.12 85.84 0.44 2.02 16 6 N -0.50 -10.91 5.06 -722.72 -3.65 -14.57 16 7 C 0.00 -0.04 8.00 127.69 1.02 0.98 16 8 C 0.08 1.78 4.27 37.92 0.16 1.94 16 9 C -0.11 -2.22 9.99 22.44 0.22 -2.00 16 10 C -0.12 -2.13 10.04 22.27 0.22 -1.90 16 11 C -0.13 -2.42 10.04 22.32 0.22 -2.20 16 12 C -0.11 -2.58 9.69 22.27 0.22 -2.36 16 13 C -0.11 -2.58 5.21 -19.71 -0.10 -2.68 16 14 C 0.07 1.76 5.16 85.78 0.44 2.20 16 15 N -0.53 -15.30 3.55 -879.46 -3.12 -18.42 16 16 C 0.08 2.71 4.03 86.30 0.35 3.06 16 17 C -0.08 -3.34 1.80 -10.79 -0.02 -3.36 16 18 H 0.08 3.16 4.29 -2.39 -0.01 3.15 16 19 C -0.11 -4.30 8.87 71.98 0.64 -3.66 16 20 C 0.04 1.92 4.45 29.85 0.13 2.06 16 21 C -0.53 -29.83 8.47 25.60 0.22 -29.62 16 22 H 0.06 3.18 7.06 -2.91 -0.02 3.16 16 23 C 0.00 0.01 5.46 84.66 0.46 0.48 16 24 N -0.94 -57.38 13.29 21.45 0.28 -57.09 16 25 Si 0.96 44.81 29.54 68.60 2.03 46.83 16 26 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 27 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 28 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 29 H 0.07 1.33 6.54 -2.39 -0.02 1.31 16 30 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.06 1.20 8.14 -2.38 -0.02 1.19 16 32 H 0.06 1.90 7.06 -2.38 -0.02 1.89 16 33 H 0.06 1.93 5.12 -2.38 -0.01 1.92 16 34 H 0.06 1.69 7.77 -2.39 -0.02 1.67 16 35 H 0.10 2.06 5.96 -2.39 -0.01 2.05 16 36 H 0.06 1.23 2.64 -2.39 -0.01 1.22 16 37 H 0.06 1.23 7.57 -2.39 -0.02 1.22 16 38 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 40 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 41 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 42 H 0.12 2.62 7.98 -2.91 -0.02 2.60 16 43 H 0.07 1.71 4.25 -2.39 -0.01 1.70 16 44 H 0.08 1.98 7.07 -2.38 -0.02 1.96 16 45 H 0.03 1.09 6.96 -2.39 -0.02 1.07 16 46 H 0.06 2.06 7.23 -2.39 -0.02 2.04 16 47 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.03 1.43 7.10 -2.39 -0.02 1.42 16 49 H 0.06 2.14 7.63 -2.39 -0.02 2.12 16 50 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 51 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 52 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -64.33 376.91 1.91 -62.42 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.90 Total: 20.24 kcal Atomic # 6 Polarization: -44.88 SS G_CDS: 5.48 Total: -39.41 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: -6.49 Total: -90.08 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -64.33 1.91 -62.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001621135168.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.556 kcal (2) G-P(sol) polarization free energy of solvation -64.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds