Wall clock time and date at job start Tue Mar 31 2020 11:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47423 * 2 1 4 4 H 1.08998 * 108.38791 * 184.63346 * 3 2 1 5 5 C 1.51622 * 108.56335 * 66.87965 * 3 2 1 6 6 N 1.46984 * 110.98104 * 171.57810 * 5 3 2 7 7 C 1.46905 * 110.99708 * 323.55282 * 6 5 3 8 8 C 1.40229 * 109.97085 * 86.77914 * 6 5 3 9 9 C 1.39022 * 119.76241 * 109.36902 * 8 6 5 10 10 C 1.38156 * 119.58881 * 180.16325 * 9 8 6 11 11 C 1.38307 * 120.19133 * 0.02562 * 10 9 8 12 12 C 1.38387 * 120.17426 * 359.91947 * 11 10 9 13 13 C 1.38003 * 120.22825 * 289.38387 * 8 6 5 14 14 C 1.51480 * 119.71484 * 359.58361 * 13 8 6 15 15 N 1.45683 * 108.56001 * 302.37671 * 3 2 1 16 16 C 1.46892 * 111.00173 * 314.07766 * 15 3 2 17 17 C 1.53002 * 109.47117 * 168.13553 * 16 15 3 18 18 H 1.09007 * 109.47063 * 54.99886 * 17 16 15 19 19 C 1.52998 * 109.47090 * 294.99925 * 17 16 15 20 20 C 1.53005 * 109.47246 * 174.99646 * 17 16 15 21 21 C 1.50697 * 109.46886 * 184.99957 * 20 17 16 22 22 H 1.07998 * 120.00175 * 0.02562 * 21 20 17 23 23 C 1.37876 * 119.99591 * 180.27543 * 21 20 17 24 24 N 1.31514 * 120.00270 * 359.72946 * 23 21 20 25 25 Si 1.86805 * 120.00013 * 179.72657 * 23 21 20 26 26 H 1.48495 * 109.47141 * 60.00066 * 25 23 21 27 27 H 1.48502 * 109.47013 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.46941 * 300.00063 * 25 23 21 29 29 H 1.08997 * 109.46854 * 174.71879 * 1 2 3 30 30 H 1.08999 * 109.46885 * 294.71427 * 1 2 3 31 31 H 1.08999 * 109.47156 * 54.71742 * 1 2 3 32 32 H 1.09006 * 109.47660 * 239.99948 * 2 1 3 33 33 H 1.09002 * 109.47325 * 120.00063 * 2 1 3 34 34 H 1.09004 * 109.17904 * 291.96203 * 5 3 2 35 35 H 1.09003 * 109.17693 * 51.19128 * 5 3 2 36 36 H 1.08999 * 109.47117 * 32.32522 * 7 6 5 37 37 H 1.08999 * 109.46936 * 152.32332 * 7 6 5 38 38 H 1.08996 * 109.47261 * 272.32199 * 7 6 5 39 39 H 1.08006 * 120.20179 * 0.13314 * 9 8 6 40 40 H 1.07998 * 119.90348 * 180.02562 * 10 9 8 41 41 H 1.08001 * 119.91628 * 179.89699 * 11 10 9 42 42 H 1.08003 * 120.16660 * 179.97438 * 12 11 10 43 43 H 1.09001 * 109.68240 * 309.45961 * 14 13 8 44 44 H 1.08998 * 109.67952 * 188.89850 * 14 13 8 45 45 H 1.08993 * 109.47302 * 48.13516 * 16 15 3 46 46 H 1.09005 * 109.47294 * 288.13301 * 16 15 3 47 47 H 1.09007 * 109.47037 * 179.97438 * 19 17 16 48 48 H 1.08993 * 109.47228 * 299.99937 * 19 17 16 49 49 H 1.09000 * 109.47230 * 60.00157 * 19 17 16 50 50 H 1.08998 * 109.46734 * 65.00368 * 20 17 16 51 51 H 1.09000 * 109.47049 * 305.00153 * 20 17 16 52 52 H 0.97001 * 120.00084 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1266 1.4230 -0.0836 5 6 1.6689 2.0858 1.3219 6 7 2.3034 3.4042 1.4622 7 6 3.6496 3.4057 0.8741 8 6 1.4967 4.3889 0.8739 9 6 0.8303 5.3062 1.6783 10 6 0.0338 6.2728 1.0951 11 6 -0.0998 6.3269 -0.2805 12 6 0.5649 5.4140 -1.0803 13 6 1.3631 4.4491 -0.4983 14 6 2.0996 3.4519 -1.3689 15 7 1.4974 2.1263 -1.1664 16 6 1.6310 1.2976 -2.3718 17 6 0.7990 1.9050 -3.5031 18 1 1.0946 2.9433 -3.6544 19 6 -0.6845 1.8459 -3.1336 20 6 1.0356 1.1145 -4.7915 21 6 0.3136 1.7847 -5.9319 22 1 -0.2566 2.6848 -5.7554 23 6 0.3768 1.2460 -7.1994 24 7 1.0715 0.1502 -7.4144 25 14 -0.5244 2.0726 -8.6116 26 1 -0.0122 3.4557 -8.7837 27 1 -0.2996 1.3019 -9.8609 28 1 -1.9783 2.1167 -8.3126 29 1 -0.3633 -1.0233 -0.0946 30 1 -0.3633 0.4297 0.9335 31 1 -0.3633 0.5936 -0.8389 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5862 2.2024 1.3719 35 1 1.9969 1.4419 2.1380 36 1 3.6750 2.7253 0.0229 37 1 3.8995 4.4132 0.5415 38 1 4.3729 3.0799 1.6214 39 1 0.9341 5.2632 2.7525 40 1 -0.4859 6.9882 1.7151 41 1 -0.7249 7.0833 -0.7316 42 1 0.4602 5.4561 -2.1544 43 1 3.1519 3.4242 -1.0858 44 1 2.0079 3.7407 -2.4159 45 1 1.2756 0.2891 -2.1607 46 1 2.6782 1.2584 -2.6717 47 1 -1.2772 2.2791 -3.9393 48 1 -0.9802 0.8078 -2.9822 49 1 -0.8531 2.4091 -2.2157 50 1 0.6583 0.0992 -4.6692 51 1 2.1036 1.0817 -5.0067 52 1 1.1157 -0.2290 -8.3061 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001621135169.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:57 Heat of formation + Delta-G solvation = 62.317336 kcal Electronic energy + Delta-G solvation = -28544.221300 eV Core-core repulsion = 25123.555619 eV Total energy + Delta-G solvation = -3420.665681 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.20720 -38.33818 -36.51407 -34.56171 -33.53398 -32.06867 -30.74338 -30.06050 -28.26312 -27.27827 -26.51507 -25.62603 -24.62734 -23.04266 -22.50365 -21.86521 -20.71528 -19.16737 -18.89611 -17.25641 -16.43165 -16.16039 -15.76971 -15.57187 -15.36513 -14.63450 -14.44787 -14.07466 -13.92838 -13.87450 -13.51428 -13.35821 -12.98595 -12.63344 -12.52587 -12.27664 -12.16619 -12.02283 -11.99044 -11.63462 -11.50066 -11.38516 -11.12793 -11.03239 -10.93204 -10.81667 -10.68363 -10.57492 -10.39724 -10.27984 -10.20141 -9.57124 -9.15502 -8.99038 -8.78484 -8.72319 -8.41724 -8.33357 -7.81583 -5.98553 -3.99649 1.35374 1.46251 3.33338 3.37952 3.40293 3.67998 3.83433 4.11155 4.47443 4.77965 4.82039 4.87879 4.97103 5.00639 5.07632 5.15014 5.30588 5.35887 5.37516 5.44669 5.46410 5.53000 5.56040 5.66309 5.72085 5.75207 5.77056 5.82148 5.87569 5.95487 6.05927 6.07973 6.13465 6.18359 6.27826 6.39643 6.41033 6.49970 6.56827 6.63877 6.67335 6.69860 6.79787 6.84480 7.00505 7.12959 7.20774 7.33248 7.41488 7.45456 7.67822 7.83765 8.01371 8.45519 9.06402 9.63817 11.12905 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014826 B = 0.003983 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.180742 B = 7028.993397 C = 8110.221833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C 0.051 3.949 4 H 0.044 0.956 5 C 0.065 3.935 6 N -0.496 5.496 7 C -0.004 4.004 8 C 0.088 3.912 9 C -0.101 4.101 10 C -0.123 4.123 11 C -0.124 4.124 12 C -0.098 4.098 13 C -0.086 4.086 14 C 0.064 3.936 15 N -0.524 5.524 16 C 0.054 3.946 17 C -0.078 4.078 18 H 0.054 0.946 19 C -0.121 4.121 20 C 0.028 3.972 21 C -0.512 4.512 22 H 0.055 0.945 23 C 0.057 3.943 24 N -0.897 5.897 25 Si 0.888 3.112 26 H -0.278 1.278 27 H -0.288 1.288 28 H -0.277 1.277 29 H 0.045 0.955 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.124 0.876 43 H 0.063 0.937 44 H 0.092 0.908 45 H 0.084 0.916 46 H 0.026 0.974 47 H 0.052 0.948 48 H 0.039 0.961 49 H 0.042 0.958 50 H 0.015 0.985 51 H 0.011 0.989 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.990 6.686 19.540 20.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.059 4.059 4 H 0.061 0.939 5 C -0.062 4.062 6 N -0.216 5.216 7 C -0.151 4.151 8 C -0.006 4.006 9 C -0.120 4.120 10 C -0.142 4.142 11 C -0.142 4.142 12 C -0.117 4.117 13 C -0.089 4.089 14 C -0.063 4.063 15 N -0.249 5.249 16 C -0.072 4.072 17 C -0.097 4.097 18 H 0.072 0.928 19 C -0.179 4.179 20 C -0.009 4.009 21 C -0.550 4.550 22 H 0.073 0.927 23 C -0.144 4.144 24 N -0.537 5.537 25 Si 0.717 3.283 26 H -0.203 1.203 27 H -0.214 1.214 28 H -0.203 1.203 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.142 0.858 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.142 0.858 43 H 0.081 0.919 44 H 0.110 0.890 45 H 0.102 0.898 46 H 0.044 0.956 47 H 0.071 0.929 48 H 0.058 0.942 49 H 0.062 0.938 50 H 0.034 0.966 51 H 0.029 0.971 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.635 6.693 20.023 21.175 hybrid contribution 0.312 0.083 -1.895 1.922 sum 1.947 6.776 18.128 19.451 Atomic orbital electron populations 1.21830 0.94800 1.01313 1.03042 1.21729 0.97630 0.94656 1.01934 1.21743 0.97197 0.94932 0.92028 0.93872 1.22118 1.00444 0.88454 0.95180 1.60546 1.02006 1.03963 1.55038 1.23087 0.89832 1.02442 0.99731 1.18685 0.96772 0.94605 0.90540 1.20960 0.97062 0.94417 0.99589 1.21029 0.99389 0.98839 0.94928 1.21159 0.99967 0.99306 0.93784 1.21050 0.96026 0.94522 1.00078 1.20373 0.98332 0.96363 0.93809 1.21825 0.96108 0.88277 1.00081 1.61082 1.58174 1.02175 1.03460 1.22524 0.98384 0.97449 0.88837 1.21236 0.94669 0.99384 0.94433 0.92801 1.21586 0.96346 1.00229 0.99700 1.19109 0.96579 0.95153 0.90062 1.21174 1.30621 1.10291 0.92937 0.92699 1.25002 0.95580 0.95021 0.98809 1.69951 1.41249 1.20605 1.21867 0.86716 0.80363 0.79485 0.81784 1.20335 1.21373 1.20270 0.93559 0.93313 0.90086 0.91168 0.92060 0.89906 0.90039 0.91560 0.91778 0.91326 0.85830 0.86267 0.86283 0.85805 0.91916 0.88975 0.89829 0.95611 0.92896 0.94233 0.93847 0.96638 0.97091 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.05 37.16 0.34 -1.54 16 2 C -0.12 -1.41 5.01 -26.73 -0.13 -1.55 16 3 C 0.05 0.61 1.69 -69.07 -0.12 0.50 16 4 H 0.04 0.53 5.57 -51.93 -0.29 0.24 16 5 C 0.06 0.74 4.87 -4.48 -0.02 0.72 16 6 N -0.50 -5.89 5.06 -179.78 -0.91 -6.80 16 7 C 0.00 -0.05 7.99 60.07 0.48 0.43 16 8 C 0.09 1.12 4.27 -83.81 -0.36 0.77 16 9 C -0.10 -1.18 9.99 -39.32 -0.39 -1.58 16 10 C -0.12 -1.33 10.04 -39.59 -0.40 -1.73 16 11 C -0.12 -1.43 10.05 -39.50 -0.40 -1.82 16 12 C -0.10 -1.28 9.69 -39.58 -0.38 -1.66 16 13 C -0.09 -1.16 5.21 -104.38 -0.54 -1.70 16 14 C 0.06 0.89 4.97 -4.54 -0.02 0.87 16 15 N -0.52 -7.38 2.91 -229.32 -0.67 -8.05 16 16 C 0.05 0.90 3.32 -3.83 -0.01 0.89 16 17 C -0.08 -1.55 2.27 -90.62 -0.21 -1.75 16 18 H 0.05 1.09 6.12 -51.93 -0.32 0.77 16 19 C -0.12 -2.31 7.93 37.16 0.29 -2.01 16 20 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 21 C -0.51 -14.12 8.41 -34.44 -0.29 -14.41 16 22 H 0.05 1.48 7.06 -52.49 -0.37 1.11 16 23 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 24 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 25 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.56 6.99 -51.93 -0.36 0.19 16 31 H 0.08 1.17 5.05 -51.93 -0.26 0.91 16 32 H 0.07 0.89 6.13 -51.93 -0.32 0.57 16 33 H 0.06 0.61 8.03 -51.93 -0.42 0.19 16 34 H 0.08 1.06 6.64 -51.93 -0.34 0.72 16 35 H 0.08 0.83 8.01 -51.93 -0.42 0.41 16 36 H 0.07 0.76 2.64 -51.93 -0.14 0.62 16 37 H 0.06 0.71 7.57 -51.93 -0.39 0.31 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 40 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.12 1.61 7.98 -52.48 -0.42 1.19 16 43 H 0.06 0.82 4.25 -51.93 -0.22 0.60 16 44 H 0.09 1.41 5.57 -51.93 -0.29 1.12 16 45 H 0.08 1.38 4.76 -51.93 -0.25 1.14 16 46 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 47 H 0.05 1.09 6.95 -51.93 -0.36 0.73 16 48 H 0.04 0.74 7.79 -51.93 -0.40 0.34 16 49 H 0.04 0.76 7.65 -51.93 -0.40 0.37 16 50 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 51 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 52 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 374.70 15.07 5.65 5.65 Total: -1.00 -29.13 374.70 -11.08 -40.21 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -8.48 Total: 1.93 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: -2.39 Total: -23.49 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: -0.84 Total: -40.88 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.13 -11.08 -40.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001621135169.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.530 kcal (2) G-P(sol) polarization free energy of solvation -29.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds