Wall clock time and date at job start Tue Mar 31 2020 11:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47423 * 2 1 4 4 H 1.08998 * 108.38791 * 184.63346 * 3 2 1 5 5 C 1.51622 * 108.56335 * 66.87965 * 3 2 1 6 6 N 1.46984 * 110.98104 * 171.57810 * 5 3 2 7 7 C 1.46905 * 110.99708 * 323.55282 * 6 5 3 8 8 C 1.40229 * 109.97085 * 86.77914 * 6 5 3 9 9 C 1.39022 * 119.76241 * 109.36902 * 8 6 5 10 10 C 1.38156 * 119.58881 * 180.16325 * 9 8 6 11 11 C 1.38307 * 120.19133 * 0.02562 * 10 9 8 12 12 C 1.38387 * 120.17426 * 359.91947 * 11 10 9 13 13 C 1.38003 * 120.22825 * 289.38387 * 8 6 5 14 14 C 1.51480 * 119.71484 * 359.58361 * 13 8 6 15 15 N 1.45683 * 108.56001 * 302.37671 * 3 2 1 16 16 C 1.46892 * 111.00173 * 314.07766 * 15 3 2 17 17 C 1.53002 * 109.47117 * 168.13553 * 16 15 3 18 18 H 1.09007 * 109.47063 * 54.99886 * 17 16 15 19 19 C 1.52998 * 109.47090 * 294.99925 * 17 16 15 20 20 C 1.53005 * 109.47246 * 174.99646 * 17 16 15 21 21 C 1.50697 * 109.46886 * 184.99957 * 20 17 16 22 22 H 1.07998 * 120.00175 * 0.02562 * 21 20 17 23 23 C 1.37876 * 119.99591 * 180.27543 * 21 20 17 24 24 N 1.31514 * 120.00270 * 359.72946 * 23 21 20 25 25 Si 1.86805 * 120.00013 * 179.72657 * 23 21 20 26 26 H 1.48495 * 109.47141 * 60.00066 * 25 23 21 27 27 H 1.48502 * 109.47013 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.46941 * 300.00063 * 25 23 21 29 29 H 1.08997 * 109.46854 * 174.71879 * 1 2 3 30 30 H 1.08999 * 109.46885 * 294.71427 * 1 2 3 31 31 H 1.08999 * 109.47156 * 54.71742 * 1 2 3 32 32 H 1.09006 * 109.47660 * 239.99948 * 2 1 3 33 33 H 1.09002 * 109.47325 * 120.00063 * 2 1 3 34 34 H 1.09004 * 109.17904 * 291.96203 * 5 3 2 35 35 H 1.09003 * 109.17693 * 51.19128 * 5 3 2 36 36 H 1.08999 * 109.47117 * 32.32522 * 7 6 5 37 37 H 1.08999 * 109.46936 * 152.32332 * 7 6 5 38 38 H 1.08996 * 109.47261 * 272.32199 * 7 6 5 39 39 H 1.08006 * 120.20179 * 0.13314 * 9 8 6 40 40 H 1.07998 * 119.90348 * 180.02562 * 10 9 8 41 41 H 1.08001 * 119.91628 * 179.89699 * 11 10 9 42 42 H 1.08003 * 120.16660 * 179.97438 * 12 11 10 43 43 H 1.09001 * 109.68240 * 309.45961 * 14 13 8 44 44 H 1.08998 * 109.67952 * 188.89850 * 14 13 8 45 45 H 1.08993 * 109.47302 * 48.13516 * 16 15 3 46 46 H 1.09005 * 109.47294 * 288.13301 * 16 15 3 47 47 H 1.09007 * 109.47037 * 179.97438 * 19 17 16 48 48 H 1.08993 * 109.47228 * 299.99937 * 19 17 16 49 49 H 1.09000 * 109.47230 * 60.00157 * 19 17 16 50 50 H 1.08998 * 109.46734 * 65.00368 * 20 17 16 51 51 H 1.09000 * 109.47049 * 305.00153 * 20 17 16 52 52 H 0.97001 * 120.00084 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1266 1.4230 -0.0836 5 6 1.6689 2.0858 1.3219 6 7 2.3034 3.4042 1.4622 7 6 3.6496 3.4057 0.8741 8 6 1.4967 4.3889 0.8739 9 6 0.8303 5.3062 1.6783 10 6 0.0338 6.2728 1.0951 11 6 -0.0998 6.3269 -0.2805 12 6 0.5649 5.4140 -1.0803 13 6 1.3631 4.4491 -0.4983 14 6 2.0996 3.4519 -1.3689 15 7 1.4974 2.1263 -1.1664 16 6 1.6310 1.2976 -2.3718 17 6 0.7990 1.9050 -3.5031 18 1 1.0946 2.9433 -3.6544 19 6 -0.6845 1.8459 -3.1336 20 6 1.0356 1.1145 -4.7915 21 6 0.3136 1.7847 -5.9319 22 1 -0.2566 2.6848 -5.7554 23 6 0.3768 1.2460 -7.1994 24 7 1.0715 0.1502 -7.4144 25 14 -0.5244 2.0726 -8.6116 26 1 -0.0122 3.4557 -8.7837 27 1 -0.2996 1.3019 -9.8609 28 1 -1.9783 2.1167 -8.3126 29 1 -0.3633 -1.0233 -0.0946 30 1 -0.3633 0.4297 0.9335 31 1 -0.3633 0.5936 -0.8389 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5862 2.2024 1.3719 35 1 1.9969 1.4419 2.1380 36 1 3.6750 2.7253 0.0229 37 1 3.8995 4.4132 0.5415 38 1 4.3729 3.0799 1.6214 39 1 0.9341 5.2632 2.7525 40 1 -0.4859 6.9882 1.7151 41 1 -0.7249 7.0833 -0.7316 42 1 0.4602 5.4561 -2.1544 43 1 3.1519 3.4242 -1.0858 44 1 2.0079 3.7407 -2.4159 45 1 1.2756 0.2891 -2.1607 46 1 2.6782 1.2584 -2.6717 47 1 -1.2772 2.2791 -3.9393 48 1 -0.9802 0.8078 -2.9822 49 1 -0.8531 2.4091 -2.2157 50 1 0.6583 0.0992 -4.6692 51 1 2.1036 1.0817 -5.0067 52 1 1.1157 -0.2290 -8.3061 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001621135169.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:55 Heat of formation + Delta-G solvation = 47.387425 kcal Electronic energy + Delta-G solvation = -28544.868709 eV Core-core repulsion = 25123.555619 eV Total energy + Delta-G solvation = -3421.313091 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.20310 -39.38971 -37.73391 -35.99540 -34.77482 -33.90993 -31.81252 -30.98342 -29.37427 -28.85612 -27.94107 -26.61476 -26.13060 -24.35230 -23.84817 -22.86523 -21.74572 -20.51387 -20.15860 -18.49654 -18.18161 -17.29652 -16.79115 -16.59967 -16.51179 -16.27533 -15.70961 -15.53230 -15.14751 -14.84457 -14.49184 -14.46835 -14.36529 -13.95971 -13.90977 -13.62607 -13.31380 -13.19849 -13.10440 -12.94663 -12.78347 -12.74520 -12.65204 -12.33482 -12.27310 -12.14473 -12.10769 -11.99914 -11.79353 -11.56003 -11.38581 -11.27182 -11.04633 -10.88191 -10.52878 -9.74947 -9.68315 -9.36520 -8.92113 -8.17809 -6.26571 0.43277 0.52724 1.38889 1.41139 1.48794 2.40852 2.68691 2.94228 3.05628 3.15751 3.76293 3.81675 3.89412 4.00255 4.02964 4.15729 4.18811 4.29623 4.34547 4.37919 4.45102 4.49044 4.53952 4.57956 4.60607 4.67468 4.74096 4.80011 4.85069 4.87936 4.90042 4.95182 5.00103 5.04313 5.11979 5.19013 5.20747 5.27761 5.30747 5.45294 5.46212 5.51831 5.54769 5.63039 5.65983 5.72830 5.80532 5.88528 5.89930 5.95169 6.09798 6.23182 6.32420 6.48112 6.88759 7.41564 8.93948 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014826 B = 0.003983 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.180742 B = 7028.993397 C = 8110.221833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.051 3.949 4 H 0.047 0.953 5 C 0.072 3.928 6 N -0.495 5.495 7 C -0.002 4.002 8 C 0.077 3.923 9 C -0.105 4.105 10 C -0.118 4.118 11 C -0.127 4.127 12 C -0.117 4.117 13 C -0.100 4.100 14 C 0.066 3.934 15 N -0.522 5.522 16 C 0.069 3.931 17 C -0.067 4.067 18 H 0.049 0.951 19 C -0.106 4.106 20 C 0.036 3.964 21 C -0.527 4.527 22 H 0.058 0.942 23 C 0.001 3.999 24 N -0.934 5.934 25 Si 0.957 3.043 26 H -0.269 1.269 27 H -0.284 1.284 28 H -0.268 1.268 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.085 0.915 39 H 0.139 0.861 40 H 0.148 0.852 41 H 0.138 0.862 42 H 0.114 0.886 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.085 0.915 46 H 0.015 0.985 47 H 0.034 0.966 48 H 0.037 0.963 49 H 0.059 0.941 50 H -0.010 1.010 51 H -0.017 1.017 52 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.328 7.866 21.543 22.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.058 4.058 4 H 0.065 0.935 5 C -0.055 4.055 6 N -0.214 5.214 7 C -0.148 4.148 8 C -0.017 4.017 9 C -0.124 4.124 10 C -0.136 4.136 11 C -0.145 4.145 12 C -0.136 4.136 13 C -0.102 4.102 14 C -0.061 4.061 15 N -0.247 5.247 16 C -0.058 4.058 17 C -0.086 4.086 18 H 0.067 0.933 19 C -0.163 4.163 20 C -0.001 4.001 21 C -0.565 4.565 22 H 0.076 0.924 23 C -0.196 4.196 24 N -0.575 5.575 25 Si 0.782 3.218 26 H -0.194 1.194 27 H -0.210 1.210 28 H -0.193 1.193 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.120 0.880 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.157 0.843 40 H 0.166 0.834 41 H 0.156 0.844 42 H 0.133 0.867 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.103 0.897 46 H 0.033 0.967 47 H 0.053 0.947 48 H 0.056 0.944 49 H 0.078 0.922 50 H 0.009 0.991 51 H 0.002 0.998 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.972 7.886 22.043 23.431 hybrid contribution 0.539 -0.261 -2.469 2.541 sum 1.511 7.625 19.574 21.061 Atomic orbital electron populations 1.21770 0.95179 1.01184 1.02488 1.21716 0.97198 0.94307 1.02450 1.21823 0.97347 0.95155 0.91511 0.93531 1.22097 0.99816 0.88612 0.94987 1.60650 1.02175 1.03870 1.54752 1.23069 0.89796 1.02050 0.99907 1.18860 0.97238 0.95275 0.90292 1.21219 0.96715 0.94152 1.00327 1.21366 0.98653 0.98781 0.94845 1.21410 0.99674 0.99144 0.94240 1.21137 0.96964 0.95481 1.00009 1.20330 0.99061 0.96608 0.94241 1.21784 0.96842 0.88343 0.99131 1.61038 1.58683 1.02003 1.02948 1.22202 0.96902 0.97624 0.89032 1.21008 0.95985 0.98289 0.93307 0.93316 1.21419 0.95147 1.00141 0.99594 1.18975 0.94313 0.94462 0.92400 1.21564 1.30592 1.10431 0.93932 0.92396 1.25890 0.96399 0.95613 1.01718 1.70086 1.42709 1.22129 1.22570 0.85628 0.79324 0.78649 0.78235 1.19353 1.20971 1.19312 0.93129 0.92254 0.92526 0.92564 0.89599 0.90976 0.87990 0.92334 0.92219 0.89669 0.84345 0.83406 0.84438 0.86746 0.91172 0.91095 0.89691 0.96704 0.94735 0.94419 0.92221 0.99117 0.99832 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.05 71.98 0.65 -2.82 16 2 C -0.12 -2.59 5.01 30.59 0.15 -2.44 16 3 C 0.05 1.17 1.69 44.70 0.08 1.25 16 4 H 0.05 1.08 5.57 -2.39 -0.01 1.07 16 5 C 0.07 1.49 4.87 85.84 0.42 1.90 16 6 N -0.50 -10.74 5.06 -722.70 -3.65 -14.39 16 7 C 0.00 -0.04 7.99 127.69 1.02 0.98 16 8 C 0.08 1.86 4.27 37.93 0.16 2.02 16 9 C -0.11 -2.20 9.99 22.44 0.22 -1.98 16 10 C -0.12 -2.23 10.04 22.27 0.22 -2.00 16 11 C -0.13 -2.70 10.05 22.32 0.22 -2.47 16 12 C -0.12 -3.02 9.69 22.27 0.22 -2.80 16 13 C -0.10 -2.64 5.21 -19.71 -0.10 -2.74 16 14 C 0.07 1.85 4.97 85.79 0.43 2.28 16 15 N -0.52 -14.68 2.91 -879.44 -2.56 -17.24 16 16 C 0.07 2.36 3.32 86.31 0.29 2.65 16 17 C -0.07 -2.75 2.27 -10.79 -0.02 -2.77 16 18 H 0.05 2.05 6.12 -2.38 -0.01 2.03 16 19 C -0.11 -4.10 7.93 71.98 0.57 -3.52 16 20 C 0.04 1.89 4.45 29.85 0.13 2.03 16 21 C -0.53 -29.85 8.41 25.60 0.22 -29.64 16 22 H 0.06 3.18 7.06 -2.91 -0.02 3.16 16 23 C 0.00 0.07 5.46 84.65 0.46 0.53 16 24 N -0.93 -57.13 13.29 21.45 0.28 -56.85 16 25 Si 0.96 44.65 29.54 68.60 2.03 46.67 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 27 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 28 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 29 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.24 6.99 -2.39 -0.02 1.23 16 31 H 0.06 1.60 5.05 -2.39 -0.01 1.59 16 32 H 0.06 1.39 6.13 -2.38 -0.01 1.38 16 33 H 0.09 1.48 8.03 -2.39 -0.02 1.46 16 34 H 0.07 1.69 6.64 -2.39 -0.02 1.67 16 35 H 0.10 1.74 8.01 -2.39 -0.02 1.72 16 36 H 0.06 1.27 2.64 -2.39 -0.01 1.26 16 37 H 0.06 1.25 7.57 -2.39 -0.02 1.23 16 38 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.14 2.45 8.06 -2.91 -0.02 2.42 16 40 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 41 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 42 H 0.11 3.07 7.98 -2.91 -0.02 3.05 16 43 H 0.07 1.85 4.25 -2.39 -0.01 1.84 16 44 H 0.07 2.27 5.57 -2.39 -0.01 2.26 16 45 H 0.08 2.88 4.76 -2.39 -0.01 2.87 16 46 H 0.01 0.53 8.12 -2.38 -0.02 0.51 16 47 H 0.03 1.43 6.95 -2.38 -0.02 1.42 16 48 H 0.04 1.44 7.79 -2.39 -0.02 1.43 16 49 H 0.06 2.10 7.65 -2.39 -0.02 2.09 16 50 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 51 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 52 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -63.52 374.70 2.34 -61.18 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 0.90 Total: 20.18 kcal Atomic # 6 Polarization: -44.89 SS G_CDS: 5.34 Total: -39.56 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -5.93 Total: -88.48 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -63.52 2.34 -61.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001621135169.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.571 kcal (2) G-P(sol) polarization free energy of solvation -63.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds