Wall clock time and date at job start Tue Mar 31 2020 11:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47132 * 2 1 4 4 H 1.09004 * 108.50624 * 305.83346 * 3 2 1 5 5 C 1.51621 * 108.56578 * 63.64255 * 3 2 1 6 6 N 1.46961 * 111.02007 * 188.51944 * 5 3 2 7 7 C 1.46907 * 110.99918 * 149.91588 * 6 5 3 8 8 C 1.40265 * 109.97602 * 273.14462 * 6 5 3 9 9 C 1.38999 * 119.79888 * 250.58197 * 8 6 5 10 10 C 1.38163 * 119.57846 * 179.62358 * 9 8 6 11 11 C 1.38314 * 120.17688 * 359.69582 * 10 9 8 12 12 C 1.38372 * 120.18293 * 0.65911 * 11 10 9 13 13 C 1.37990 * 120.14525 * 70.37146 * 8 6 5 14 14 C 1.51445 * 119.80152 * 0.75724 * 13 8 6 15 15 N 1.45682 * 108.56270 * 188.15260 * 3 2 1 16 16 C 1.46893 * 111.00195 * 46.03728 * 15 3 2 17 17 C 1.53002 * 109.46954 * 176.76553 * 16 15 3 18 18 H 1.08997 * 109.47463 * 299.51274 * 17 16 15 19 19 C 1.52996 * 109.46935 * 59.52024 * 17 16 15 20 20 C 1.53004 * 109.47050 * 179.51661 * 17 16 15 21 21 C 1.50706 * 109.47068 * 174.99938 * 20 17 16 22 22 H 1.07991 * 119.99829 * 0.02562 * 21 20 17 23 23 C 1.37875 * 119.99740 * 179.97438 * 21 20 17 24 24 N 1.31520 * 120.00285 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99946 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46813 * 60.00162 * 25 23 21 27 27 H 1.48499 * 109.47282 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.46974 * 300.00135 * 25 23 21 29 29 H 1.09005 * 109.47459 * 303.49139 * 1 2 3 30 30 H 1.08997 * 109.47207 * 63.48642 * 1 2 3 31 31 H 1.08999 * 109.47232 * 183.48783 * 1 2 3 32 32 H 1.09001 * 109.46870 * 239.99915 * 2 1 3 33 33 H 1.08995 * 109.47021 * 119.99624 * 2 1 3 34 34 H 1.09004 * 109.16571 * 68.11958 * 5 3 2 35 35 H 1.09000 * 109.16815 * 308.92280 * 5 3 2 36 36 H 1.09002 * 109.46884 * 178.68337 * 7 6 5 37 37 H 1.09003 * 109.46894 * 298.68496 * 7 6 5 38 38 H 1.08999 * 109.46870 * 58.68585 * 7 6 5 39 39 H 1.08005 * 120.21578 * 359.59336 * 9 8 6 40 40 H 1.08002 * 119.91705 * 180.02562 * 10 9 8 41 41 H 1.07994 * 119.90586 * 180.40368 * 11 10 9 42 42 H 1.08005 * 120.16151 * 179.72570 * 12 11 10 43 43 H 1.08996 * 109.68559 * 50.31043 * 14 13 8 44 44 H 1.09005 * 109.68524 * 170.86748 * 14 13 8 45 45 H 1.08998 * 109.47485 * 296.76625 * 16 15 3 46 46 H 1.08999 * 109.47456 * 56.76776 * 16 15 3 47 47 H 1.09006 * 109.46735 * 179.97438 * 19 17 16 48 48 H 1.08998 * 109.47275 * 299.99124 * 19 17 16 49 49 H 1.08996 * 109.47694 * 59.99925 * 19 17 16 50 50 H 1.08996 * 109.47078 * 295.00170 * 20 17 16 51 51 H 1.09001 * 109.47078 * 54.99974 * 20 17 16 52 52 H 0.96999 * 120.00382 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5848 1.9705 -0.8380 5 6 1.5993 2.1104 1.2879 6 7 1.8839 3.5519 1.2584 7 6 0.9079 4.2978 2.0640 8 6 3.1919 3.7913 1.7047 9 6 3.4009 4.4001 2.9367 10 6 4.6913 4.6267 3.3753 11 6 5.7679 4.2442 2.5958 12 6 5.5584 3.6448 1.3663 13 6 4.2688 3.4201 0.9258 14 6 4.0344 2.7684 -0.4211 15 7 3.4835 1.4241 -0.1958 16 6 3.8552 0.5133 -1.2867 17 6 5.3665 0.5815 -1.5155 18 1 5.6469 1.5985 -1.7895 19 6 6.0952 0.1798 -0.2317 20 6 5.7553 -0.3761 -2.6436 21 6 7.2221 -0.2196 -2.9522 22 1 7.8174 0.4913 -2.3988 23 6 7.8041 -0.9850 -3.9404 24 7 7.0791 -1.8512 -4.6141 25 14 9.6223 -0.7916 -4.3225 26 1 10.4191 -1.1057 -3.1094 27 1 9.9996 -1.7210 -5.4175 28 1 9.8934 0.6061 -4.7447 29 1 -0.3634 0.5671 0.8571 30 1 -0.3633 0.4587 -0.9196 31 1 -0.3634 -1.0257 0.0625 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.1301 1.6578 2.1255 35 1 0.5280 1.9597 1.4208 36 1 1.1555 5.3592 2.0439 37 1 -0.0910 4.1498 1.6535 38 1 0.9350 3.9379 3.0925 39 1 2.5599 4.6947 3.5470 40 1 4.8599 5.0990 4.3319 41 1 6.7747 4.4175 2.9458 42 1 6.3993 3.3503 0.7559 43 1 3.3268 3.3632 -0.9986 44 1 4.9781 2.6926 -0.9615 45 1 3.5736 -0.5057 -1.0212 46 1 3.3360 0.8077 -2.1988 47 1 7.1719 0.2280 -0.3948 48 1 5.8184 0.8620 0.5720 49 1 5.8149 -0.8373 0.0423 50 1 5.5566 -1.4021 -2.3339 51 1 5.1701 -0.1455 -3.5338 52 1 7.4884 -2.3894 -5.3095 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001621135170.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:00 Heat of formation + Delta-G solvation = 39.282237 kcal Electronic energy + Delta-G solvation = -28025.878504 eV Core-core repulsion = 24604.213947 eV Total energy + Delta-G solvation = -3421.664558 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.65935 -38.20807 -36.77795 -34.86248 -33.46874 -32.10558 -30.90664 -29.84714 -28.54571 -26.79391 -26.54467 -25.59223 -24.52428 -23.13982 -22.46515 -21.46419 -20.62766 -19.76971 -18.61494 -17.35408 -16.44598 -16.16584 -15.45190 -15.24935 -15.23074 -14.57585 -14.48897 -14.19935 -14.04970 -13.89974 -13.73369 -13.58505 -12.86017 -12.61268 -12.50048 -12.33097 -12.19573 -12.11311 -12.04123 -11.70250 -11.51889 -11.38057 -11.20127 -11.14438 -10.88256 -10.82131 -10.73615 -10.64433 -10.38410 -10.26183 -10.09340 -9.50452 -9.38657 -9.08813 -8.91384 -8.70341 -8.29998 -7.96331 -7.86053 -5.95407 -3.96430 1.43240 1.47241 3.35859 3.40304 3.42665 3.59218 3.82076 4.26687 4.50298 4.78108 4.84299 4.90226 4.95067 5.04890 5.08714 5.15315 5.25932 5.31892 5.40071 5.41532 5.42855 5.50044 5.54591 5.58157 5.64644 5.69174 5.82116 5.82514 5.87708 5.94414 5.99631 6.03299 6.11043 6.17962 6.26928 6.28076 6.34384 6.47570 6.51435 6.59531 6.66938 6.72898 6.80508 7.00623 7.05921 7.19962 7.24764 7.30770 7.52146 7.53992 7.71612 7.87839 8.04701 8.48680 9.09611 9.66826 11.16088 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014314 B = 0.003830 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.604039 B = 7309.510386 C = 8914.008875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.130 4.130 3 C 0.097 3.903 4 H 0.040 0.960 5 C 0.065 3.935 6 N -0.497 5.497 7 C 0.023 3.977 8 C 0.104 3.896 9 C -0.170 4.170 10 C -0.109 4.109 11 C -0.138 4.138 12 C -0.088 4.088 13 C -0.064 4.064 14 C 0.090 3.910 15 N -0.533 5.533 16 C 0.062 3.938 17 C -0.087 4.087 18 H 0.058 0.942 19 C -0.123 4.123 20 C 0.029 3.971 21 C -0.512 4.512 22 H 0.055 0.945 23 C 0.056 3.944 24 N -0.897 5.897 25 Si 0.889 3.111 26 H -0.277 1.277 27 H -0.288 1.288 28 H -0.278 1.278 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.034 0.966 39 H 0.121 0.879 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.128 0.872 43 H 0.050 0.950 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.027 0.973 47 H 0.052 0.948 48 H 0.044 0.956 49 H 0.039 0.961 50 H 0.016 0.984 51 H 0.012 0.988 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.847 10.985 15.296 22.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.168 4.168 3 C -0.013 4.013 4 H 0.058 0.942 5 C -0.061 4.061 6 N -0.213 5.213 7 C -0.125 4.125 8 C 0.008 3.992 9 C -0.190 4.190 10 C -0.128 4.128 11 C -0.157 4.157 12 C -0.107 4.107 13 C -0.067 4.067 14 C -0.037 4.037 15 N -0.257 5.257 16 C -0.064 4.064 17 C -0.105 4.105 18 H 0.076 0.924 19 C -0.180 4.180 20 C -0.009 4.009 21 C -0.550 4.550 22 H 0.073 0.927 23 C -0.144 4.144 24 N -0.537 5.537 25 Si 0.717 3.283 26 H -0.203 1.203 27 H -0.214 1.214 28 H -0.203 1.203 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.053 0.947 39 H 0.139 0.861 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.146 0.854 43 H 0.068 0.932 44 H 0.115 0.885 45 H 0.095 0.905 46 H 0.045 0.955 47 H 0.071 0.929 48 H 0.063 0.937 49 H 0.059 0.941 50 H 0.034 0.966 51 H 0.030 0.970 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.768 10.806 15.047 22.499 hybrid contribution 0.661 0.152 -0.189 0.704 sum -12.107 10.958 14.858 22.077 Atomic orbital electron populations 1.21855 0.95928 1.01608 1.01557 1.21834 0.95282 0.96081 1.03640 1.21018 0.88486 0.95351 0.96431 0.94184 1.22129 1.00614 0.85023 0.98299 1.59646 1.00709 1.08964 1.51990 1.22512 0.95650 0.98839 0.95495 1.18685 0.89533 0.98783 0.92186 1.21372 0.97569 1.04710 0.95382 1.20925 0.92401 1.00063 0.99444 1.21098 0.98699 1.00643 0.95253 1.21079 0.96241 0.97439 0.95957 1.19527 0.91730 0.98853 0.96553 1.21345 1.01377 0.88326 0.92655 1.61071 1.10455 1.08944 1.45238 1.22371 0.97712 0.96118 0.90248 1.21380 0.91124 1.00440 0.97569 0.92387 1.21593 1.00134 0.99920 0.96375 1.19102 0.96111 0.93864 0.91790 1.21186 0.94665 1.21183 1.18002 0.92667 1.25003 0.97742 0.95421 0.96274 1.69955 1.35763 1.24393 1.23572 0.86715 0.85856 0.77871 0.77896 1.20277 1.21406 1.20325 0.92878 0.92768 0.92576 0.90307 0.91272 0.92911 0.89985 0.90936 0.90966 0.94734 0.86113 0.86619 0.86334 0.85437 0.93233 0.88501 0.90471 0.95496 0.92923 0.93721 0.94148 0.96566 0.96960 0.93074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.72 37.16 0.36 -1.09 16 2 C -0.13 -1.55 4.90 -26.73 -0.13 -1.68 16 3 C 0.10 1.26 1.81 -69.07 -0.13 1.14 16 4 H 0.04 0.57 7.90 -51.93 -0.41 0.16 16 5 C 0.06 0.76 4.66 -4.49 -0.02 0.74 16 6 N -0.50 -5.96 4.50 -179.79 -0.81 -6.76 16 7 C 0.02 0.20 8.14 60.07 0.49 0.69 16 8 C 0.10 1.38 5.04 -83.81 -0.42 0.96 16 9 C -0.17 -1.97 8.88 -39.33 -0.35 -2.32 16 10 C -0.11 -1.22 10.04 -39.58 -0.40 -1.62 16 11 C -0.14 -1.64 10.04 -39.50 -0.40 -2.04 16 12 C -0.09 -1.19 9.69 -39.58 -0.38 -1.57 16 13 C -0.06 -0.92 5.41 -104.39 -0.57 -1.48 16 14 C 0.09 1.37 4.69 -4.55 -0.02 1.35 16 15 N -0.53 -8.09 3.64 -229.33 -0.83 -8.92 16 16 C 0.06 1.07 3.60 -3.83 -0.01 1.05 16 17 C -0.09 -1.74 1.90 -90.62 -0.17 -1.91 16 18 H 0.06 1.18 5.79 -51.93 -0.30 0.88 16 19 C -0.12 -2.37 8.82 37.16 0.33 -2.04 16 20 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 21 C -0.51 -14.21 8.41 -34.44 -0.29 -14.50 16 22 H 0.06 1.49 7.05 -52.49 -0.37 1.12 16 23 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 24 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 25 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 29 H 0.05 0.45 6.11 -51.93 -0.32 0.13 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.08 1.04 5.74 -51.93 -0.30 0.74 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.69 7.77 -51.93 -0.40 0.28 16 35 H 0.08 0.79 5.50 -51.93 -0.29 0.51 16 36 H 0.07 0.62 7.79 -51.93 -0.40 0.22 16 37 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 38 H 0.03 0.28 7.01 -51.93 -0.36 -0.08 16 39 H 0.12 1.16 5.92 -52.48 -0.31 0.85 16 40 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 42 H 0.13 1.68 7.98 -52.48 -0.42 1.27 16 43 H 0.05 0.78 7.73 -51.93 -0.40 0.37 16 44 H 0.10 1.57 4.76 -51.93 -0.25 1.32 16 45 H 0.08 1.33 6.15 -51.93 -0.32 1.01 16 46 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.05 1.08 6.95 -51.93 -0.36 0.72 16 48 H 0.04 0.79 7.28 -51.93 -0.38 0.41 16 49 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 51 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 52 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 384.86 15.07 5.80 5.80 Total: -1.00 -29.95 384.86 -11.41 -41.36 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -8.95 Total: 0.26 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: -2.33 Total: -22.22 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: -0.91 Total: -41.86 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.95 -11.41 -41.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001621135170.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.644 kcal (2) G-P(sol) polarization free energy of solvation -29.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds