Wall clock time and date at job start Tue Mar 31 2020 11:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47132 * 2 1 4 4 H 1.09004 * 108.50624 * 305.83346 * 3 2 1 5 5 C 1.51621 * 108.56578 * 63.64255 * 3 2 1 6 6 N 1.46961 * 111.02007 * 188.51944 * 5 3 2 7 7 C 1.46907 * 110.99918 * 149.91588 * 6 5 3 8 8 C 1.40265 * 109.97602 * 273.14462 * 6 5 3 9 9 C 1.38999 * 119.79888 * 250.58197 * 8 6 5 10 10 C 1.38163 * 119.57846 * 179.62358 * 9 8 6 11 11 C 1.38314 * 120.17688 * 359.69582 * 10 9 8 12 12 C 1.38372 * 120.18293 * 0.65911 * 11 10 9 13 13 C 1.37990 * 120.14525 * 70.37146 * 8 6 5 14 14 C 1.51445 * 119.80152 * 0.75724 * 13 8 6 15 15 N 1.45682 * 108.56270 * 188.15260 * 3 2 1 16 16 C 1.46893 * 111.00195 * 46.03728 * 15 3 2 17 17 C 1.53002 * 109.46954 * 176.76553 * 16 15 3 18 18 H 1.08997 * 109.47463 * 299.51274 * 17 16 15 19 19 C 1.52996 * 109.46935 * 59.52024 * 17 16 15 20 20 C 1.53004 * 109.47050 * 179.51661 * 17 16 15 21 21 C 1.50706 * 109.47068 * 174.99938 * 20 17 16 22 22 H 1.07991 * 119.99829 * 0.02562 * 21 20 17 23 23 C 1.37875 * 119.99740 * 179.97438 * 21 20 17 24 24 N 1.31520 * 120.00285 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99946 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46813 * 60.00162 * 25 23 21 27 27 H 1.48499 * 109.47282 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.46974 * 300.00135 * 25 23 21 29 29 H 1.09005 * 109.47459 * 303.49139 * 1 2 3 30 30 H 1.08997 * 109.47207 * 63.48642 * 1 2 3 31 31 H 1.08999 * 109.47232 * 183.48783 * 1 2 3 32 32 H 1.09001 * 109.46870 * 239.99915 * 2 1 3 33 33 H 1.08995 * 109.47021 * 119.99624 * 2 1 3 34 34 H 1.09004 * 109.16571 * 68.11958 * 5 3 2 35 35 H 1.09000 * 109.16815 * 308.92280 * 5 3 2 36 36 H 1.09002 * 109.46884 * 178.68337 * 7 6 5 37 37 H 1.09003 * 109.46894 * 298.68496 * 7 6 5 38 38 H 1.08999 * 109.46870 * 58.68585 * 7 6 5 39 39 H 1.08005 * 120.21578 * 359.59336 * 9 8 6 40 40 H 1.08002 * 119.91705 * 180.02562 * 10 9 8 41 41 H 1.07994 * 119.90586 * 180.40368 * 11 10 9 42 42 H 1.08005 * 120.16151 * 179.72570 * 12 11 10 43 43 H 1.08996 * 109.68559 * 50.31043 * 14 13 8 44 44 H 1.09005 * 109.68524 * 170.86748 * 14 13 8 45 45 H 1.08998 * 109.47485 * 296.76625 * 16 15 3 46 46 H 1.08999 * 109.47456 * 56.76776 * 16 15 3 47 47 H 1.09006 * 109.46735 * 179.97438 * 19 17 16 48 48 H 1.08998 * 109.47275 * 299.99124 * 19 17 16 49 49 H 1.08996 * 109.47694 * 59.99925 * 19 17 16 50 50 H 1.08996 * 109.47078 * 295.00170 * 20 17 16 51 51 H 1.09001 * 109.47078 * 54.99974 * 20 17 16 52 52 H 0.96999 * 120.00382 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5848 1.9705 -0.8380 5 6 1.5993 2.1104 1.2879 6 7 1.8839 3.5519 1.2584 7 6 0.9079 4.2978 2.0640 8 6 3.1919 3.7913 1.7047 9 6 3.4009 4.4001 2.9367 10 6 4.6913 4.6267 3.3753 11 6 5.7679 4.2442 2.5958 12 6 5.5584 3.6448 1.3663 13 6 4.2688 3.4201 0.9258 14 6 4.0344 2.7684 -0.4211 15 7 3.4835 1.4241 -0.1958 16 6 3.8552 0.5133 -1.2867 17 6 5.3665 0.5815 -1.5155 18 1 5.6469 1.5985 -1.7895 19 6 6.0952 0.1798 -0.2317 20 6 5.7553 -0.3761 -2.6436 21 6 7.2221 -0.2196 -2.9522 22 1 7.8174 0.4913 -2.3988 23 6 7.8041 -0.9850 -3.9404 24 7 7.0791 -1.8512 -4.6141 25 14 9.6223 -0.7916 -4.3225 26 1 10.4191 -1.1057 -3.1094 27 1 9.9996 -1.7210 -5.4175 28 1 9.8934 0.6061 -4.7447 29 1 -0.3634 0.5671 0.8571 30 1 -0.3633 0.4587 -0.9196 31 1 -0.3634 -1.0257 0.0625 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.1301 1.6578 2.1255 35 1 0.5280 1.9597 1.4208 36 1 1.1555 5.3592 2.0439 37 1 -0.0910 4.1498 1.6535 38 1 0.9350 3.9379 3.0925 39 1 2.5599 4.6947 3.5470 40 1 4.8599 5.0990 4.3319 41 1 6.7747 4.4175 2.9458 42 1 6.3993 3.3503 0.7559 43 1 3.3268 3.3632 -0.9986 44 1 4.9781 2.6926 -0.9615 45 1 3.5736 -0.5057 -1.0212 46 1 3.3360 0.8077 -2.1988 47 1 7.1719 0.2280 -0.3948 48 1 5.8184 0.8620 0.5720 49 1 5.8149 -0.8373 0.0423 50 1 5.5566 -1.4021 -2.3339 51 1 5.1701 -0.1455 -3.5338 52 1 7.4884 -2.3894 -5.3095 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001621135170.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:59 Heat of formation + Delta-G solvation = 23.606017 kcal Electronic energy + Delta-G solvation = -28026.558276 eV Core-core repulsion = 24604.213947 eV Total energy + Delta-G solvation = -3422.344330 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.65929 -39.37082 -37.84470 -36.31204 -34.81093 -33.87516 -32.06226 -30.75272 -29.61949 -28.63491 -27.74307 -26.64125 -25.84305 -24.52185 -23.81518 -22.41971 -21.76305 -20.87831 -20.14704 -18.55398 -18.20208 -17.34405 -16.61547 -16.36893 -16.32155 -16.18437 -15.74801 -15.45754 -15.19700 -14.97918 -14.69565 -14.59909 -14.29829 -14.12758 -13.67553 -13.46276 -13.39950 -13.26207 -13.17863 -12.94008 -12.74035 -12.72895 -12.64376 -12.50674 -12.31018 -12.18330 -12.11444 -11.93364 -11.84874 -11.65335 -11.40528 -11.27385 -10.95843 -10.83579 -10.50654 -10.27832 -9.66980 -9.15212 -8.84592 -8.15977 -6.24881 0.50168 0.51800 1.40539 1.43149 1.50664 2.42741 2.68367 2.82518 3.17529 3.20442 3.81993 3.88163 3.92623 3.99958 4.12327 4.19854 4.24278 4.32028 4.36383 4.39585 4.45336 4.47974 4.52050 4.59483 4.62138 4.65078 4.66690 4.71995 4.86860 4.89096 4.95194 4.95433 4.96143 4.98556 5.07414 5.17091 5.19467 5.30635 5.31154 5.37907 5.42305 5.47782 5.50753 5.56427 5.60070 5.72481 5.81730 5.89316 5.90457 6.11584 6.14315 6.27129 6.35355 6.44986 6.90483 7.43171 8.95950 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014314 B = 0.003830 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.604039 B = 7309.510386 C = 8914.008875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.127 4.127 3 C 0.095 3.905 4 H 0.029 0.971 5 C 0.074 3.926 6 N -0.511 5.511 7 C 0.021 3.979 8 C 0.094 3.906 9 C -0.170 4.170 10 C -0.106 4.106 11 C -0.143 4.143 12 C -0.105 4.105 13 C -0.087 4.087 14 C 0.097 3.903 15 N -0.531 5.531 16 C 0.076 3.924 17 C -0.076 4.076 18 H 0.056 0.944 19 C -0.108 4.108 20 C 0.036 3.964 21 C -0.528 4.528 22 H 0.060 0.940 23 C 0.000 4.000 24 N -0.935 5.935 25 Si 0.958 3.042 26 H -0.267 1.267 27 H -0.285 1.285 28 H -0.268 1.268 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.042 0.958 35 H 0.107 0.893 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.047 0.953 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.137 0.863 42 H 0.120 0.880 43 H 0.039 0.961 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.016 0.984 47 H 0.038 0.962 48 H 0.062 0.938 49 H 0.034 0.966 50 H -0.009 1.009 51 H -0.016 1.016 52 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.318 12.437 17.729 25.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C -0.014 4.014 4 H 0.047 0.953 5 C -0.052 4.052 6 N -0.228 5.228 7 C -0.125 4.125 8 C -0.002 4.002 9 C -0.190 4.190 10 C -0.125 4.125 11 C -0.161 4.161 12 C -0.124 4.124 13 C -0.090 4.090 14 C -0.030 4.030 15 N -0.255 5.255 16 C -0.051 4.051 17 C -0.094 4.094 18 H 0.074 0.926 19 C -0.166 4.166 20 C -0.001 4.001 21 C -0.566 4.566 22 H 0.079 0.921 23 C -0.197 4.197 24 N -0.576 5.576 25 Si 0.783 3.217 26 H -0.192 1.192 27 H -0.210 1.210 28 H -0.193 1.193 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.125 0.875 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.065 0.935 39 H 0.162 0.838 40 H 0.163 0.837 41 H 0.155 0.845 42 H 0.138 0.862 43 H 0.057 0.943 44 H 0.098 0.902 45 H 0.094 0.906 46 H 0.034 0.966 47 H 0.057 0.943 48 H 0.081 0.919 49 H 0.053 0.947 50 H 0.009 0.991 51 H 0.002 0.998 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.250 12.276 17.497 25.148 hybrid contribution 0.763 -0.258 -0.929 1.230 sum -12.487 12.017 16.568 23.976 Atomic orbital electron populations 1.21808 0.93717 1.02520 1.02246 1.21787 0.97200 0.94988 1.02571 1.21127 0.86779 0.96273 0.97173 0.95285 1.22049 1.01767 0.84897 0.96450 1.59614 1.00914 1.09149 1.53122 1.22607 0.95457 0.98619 0.95864 1.18847 0.89718 0.98970 0.92687 1.21666 0.98684 1.03842 0.94836 1.21303 0.91898 0.99022 1.00279 1.21353 1.00141 1.00049 0.94567 1.21149 0.95820 0.98474 0.96962 1.19500 0.92761 1.00391 0.96298 1.21204 1.00075 0.88173 0.93580 1.61102 1.12215 1.08664 1.43553 1.22084 0.95445 0.96835 0.90780 1.21174 0.93347 0.98774 0.96154 0.92557 1.21438 0.98911 0.99969 0.96250 1.18970 0.95061 0.93654 0.92456 1.21585 0.95803 1.21128 1.18071 0.92148 1.25913 1.02687 0.95023 0.96114 1.70094 1.37892 1.25374 1.24227 0.85604 0.79945 0.78193 0.77948 1.19207 1.21046 1.19311 0.91171 0.92892 0.91732 0.92257 0.91414 0.93993 0.87502 0.90615 0.89513 0.93453 0.83807 0.83706 0.84465 0.86173 0.94264 0.90216 0.90566 0.96599 0.94337 0.91903 0.94672 0.99086 0.99754 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.72 71.98 0.70 -1.83 16 2 C -0.13 -2.98 4.90 30.60 0.15 -2.83 16 3 C 0.10 2.47 1.81 44.70 0.08 2.55 16 4 H 0.03 0.83 7.90 -2.39 -0.02 0.81 16 5 C 0.07 1.60 4.66 85.84 0.40 2.00 16 6 N -0.51 -11.32 4.50 -722.74 -3.25 -14.57 16 7 C 0.02 0.31 8.14 127.69 1.04 1.35 16 8 C 0.09 2.34 5.04 37.91 0.19 2.53 16 9 C -0.17 -3.47 8.88 22.43 0.20 -3.27 16 10 C -0.11 -2.04 10.04 22.27 0.22 -1.82 16 11 C -0.14 -3.12 10.04 22.32 0.22 -2.89 16 12 C -0.10 -2.80 9.69 22.27 0.22 -2.58 16 13 C -0.09 -2.47 5.41 -19.71 -0.11 -2.58 16 14 C 0.10 3.03 4.69 85.77 0.40 3.43 16 15 N -0.53 -16.44 3.64 -879.47 -3.20 -19.64 16 16 C 0.08 2.73 3.60 86.31 0.31 3.04 16 17 C -0.08 -3.19 1.90 -10.79 -0.02 -3.21 16 18 H 0.06 2.39 5.79 -2.39 -0.01 2.38 16 19 C -0.11 -4.27 8.82 71.98 0.63 -3.63 16 20 C 0.04 1.93 4.45 29.85 0.13 2.06 16 21 C -0.53 -30.09 8.41 25.60 0.22 -29.88 16 22 H 0.06 3.31 7.05 -2.92 -0.02 3.29 16 23 C 0.00 -0.01 5.46 84.65 0.46 0.46 16 24 N -0.94 -57.63 13.29 21.45 0.28 -57.35 16 25 Si 0.96 44.85 29.54 68.60 2.03 46.88 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 27 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 28 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 29 H 0.07 0.98 6.11 -2.38 -0.01 0.97 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 1.61 5.74 -2.39 -0.01 1.60 16 33 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.04 1.01 7.77 -2.39 -0.02 0.99 16 35 H 0.11 1.75 5.50 -2.39 -0.01 1.73 16 36 H 0.08 1.08 7.79 -2.39 -0.02 1.06 16 37 H 0.09 1.03 8.08 -2.39 -0.02 1.01 16 38 H 0.05 0.59 7.01 -2.39 -0.02 0.57 16 39 H 0.14 2.20 5.92 -2.91 -0.02 2.19 16 40 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 41 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 42 H 0.12 3.25 7.98 -2.91 -0.02 3.23 16 43 H 0.04 1.28 7.73 -2.39 -0.02 1.26 16 44 H 0.08 2.72 4.76 -2.38 -0.01 2.71 16 45 H 0.08 2.76 6.15 -2.39 -0.01 2.75 16 46 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.04 1.60 6.95 -2.38 -0.02 1.58 16 48 H 0.06 2.23 7.28 -2.39 -0.02 2.22 16 49 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 50 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 51 H -0.02 -0.93 8.14 -2.39 -0.02 -0.94 16 52 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -66.01 384.86 2.20 -63.81 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.88 Total: 17.97 kcal Atomic # 6 Polarization: -42.55 SS G_CDS: 5.45 Total: -37.10 kcal Atomic # 7 Polarization: -85.40 SS G_CDS: -6.16 Total: -91.56 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -66.01 2.20 -63.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001621135170.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.418 kcal (2) G-P(sol) polarization free energy of solvation -66.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds