Wall clock time and date at job start Tue Mar 31 2020 10:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38304 * 119.95938 * 2 1 4 4 C 1.38265 * 120.15010 * 180.02562 * 3 2 1 5 5 C 1.38129 * 120.07442 * 359.74008 * 4 3 2 6 6 C 1.50691 * 120.04313 * 180.27627 * 5 4 3 7 7 C 1.38898 * 119.91897 * 0.53463 * 5 4 3 8 8 N 1.39671 * 120.07095 * 179.74783 * 7 5 4 9 9 C 1.46958 * 111.00053 * 115.36403 * 8 7 5 10 10 C 1.53053 * 109.36285 * 183.18584 * 9 8 7 11 11 N 1.46950 * 109.36582 * 301.59625 * 10 9 8 12 12 C 1.46903 * 110.99929 * 183.18746 * 11 10 9 13 13 C 1.53000 * 109.47043 * 76.18944 * 12 11 10 14 14 H 1.08991 * 109.47178 * 304.20755 * 13 12 11 15 15 C 1.52998 * 109.46969 * 64.20808 * 13 12 11 16 16 C 1.52995 * 109.47205 * 184.20440 * 13 12 11 17 17 C 1.50698 * 109.47206 * 174.99923 * 16 13 12 18 18 H 1.07997 * 119.99899 * 0.02562 * 17 16 13 19 19 C 1.37878 * 119.99926 * 180.02562 * 17 16 13 20 20 N 1.31509 * 120.00260 * 359.72255 * 19 17 16 21 21 Si 1.86802 * 119.99950 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47391 * 179.72309 * 21 19 17 23 23 H 1.48499 * 109.47299 * 299.72900 * 21 19 17 24 24 H 1.48501 * 109.47067 * 59.72515 * 21 19 17 25 25 C 1.46958 * 110.87849 * 59.32293 * 11 10 9 26 26 C 1.46960 * 110.99790 * 239.15905 * 8 7 5 27 27 C 1.38079 * 119.96339 * 180.02562 * 2 1 3 28 28 H 1.09006 * 109.47281 * 269.97795 * 1 2 3 29 29 H 1.09001 * 109.47438 * 29.97914 * 1 2 3 30 30 H 1.08996 * 109.47415 * 149.98049 * 1 2 3 31 31 H 1.08005 * 119.92950 * 0.02562 * 3 2 1 32 32 H 1.07996 * 119.96657 * 180.02562 * 4 3 2 33 33 H 1.09002 * 109.47585 * 275.04556 * 6 5 4 34 34 H 1.09001 * 109.46734 * 35.04251 * 6 5 4 35 35 H 1.08997 * 109.47399 * 155.04395 * 6 5 4 36 36 H 1.08994 * 109.49207 * 63.22012 * 9 8 7 37 37 H 1.08997 * 109.48729 * 303.14866 * 9 8 7 38 38 H 1.08999 * 109.48738 * 181.62570 * 10 9 8 39 39 H 1.09007 * 109.48889 * 61.56638 * 10 9 8 40 40 H 1.08991 * 109.47444 * 316.18833 * 12 11 10 41 41 H 1.09009 * 109.47052 * 196.18898 * 12 11 10 42 42 H 1.09003 * 109.47375 * 305.01404 * 15 13 12 43 43 H 1.09002 * 109.47811 * 65.01575 * 15 13 12 44 44 H 1.09004 * 109.47144 * 185.01866 * 15 13 12 45 45 H 1.08996 * 109.46998 * 55.00103 * 16 13 12 46 46 H 1.09002 * 109.47693 * 295.00109 * 16 13 12 47 47 H 0.97005 * 119.99972 * 0.27699 * 20 19 17 48 48 H 1.08998 * 109.48863 * 60.64826 * 25 11 10 49 49 H 1.09011 * 109.48769 * 180.70990 * 25 11 10 50 50 H 1.08990 * 109.49199 * 296.77828 * 26 8 7 51 51 H 1.09006 * 109.48607 * 56.84838 * 26 8 7 52 52 H 1.07996 * 120.03783 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1982 0.0000 4 6 3.5803 1.2028 -0.0005 5 6 4.2765 0.0098 0.0044 6 6 5.7834 0.0157 0.0101 7 6 3.5859 -1.1953 -0.0014 8 7 4.2867 -2.4035 -0.0018 9 6 4.0378 -3.1571 1.2350 10 6 4.8830 -4.4331 1.2305 11 7 4.5434 -5.2384 0.0492 12 6 5.2804 -6.5092 0.0487 13 6 4.6447 -7.4678 1.0576 14 1 4.6158 -6.9953 2.0393 15 6 3.2207 -7.8061 0.6122 16 6 5.4737 -8.7515 1.1336 17 6 4.9196 -9.6441 2.2140 18 1 4.0617 -9.3276 2.7886 19 6 5.5079 -10.8647 2.4688 20 7 6.5492 -11.2525 1.7655 21 14 4.8206 -11.9715 3.8075 22 1 5.6215 -13.2200 3.8773 23 1 4.8858 -11.2678 5.1136 24 1 3.4078 -12.3065 3.4959 25 6 4.7923 -4.4848 -1.1876 26 6 3.9470 -3.2089 -1.1832 27 6 2.1966 -1.1962 -0.0005 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5141 31 1 1.6558 2.1325 0.0004 32 1 4.1166 2.1402 -0.0001 33 1 6.1503 0.1056 -1.0124 34 1 6.1411 0.8596 0.5999 35 1 6.1487 -0.9137 0.4468 36 1 2.9818 -3.4207 1.2940 37 1 4.3087 -2.5445 2.0948 38 1 4.6783 -5.0080 2.1337 39 1 5.9401 -4.1690 1.1990 40 1 6.3189 -6.3270 0.3252 41 1 5.2417 -6.9513 -0.9469 42 1 2.6553 -6.8848 0.4719 43 1 3.2551 -8.3578 -0.3273 44 1 2.7369 -8.4167 1.3746 45 1 6.5094 -8.5020 1.3642 46 1 5.4295 -9.2699 0.1758 47 1 6.9060 -10.6779 1.0700 48 1 5.8483 -4.2213 -1.2466 49 1 4.5214 -5.0975 -2.0476 50 1 2.8901 -3.4730 -1.1517 51 1 4.1518 -2.6339 -2.0864 52 1 1.6567 -2.1315 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001621209057.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:52 Heat of formation + Delta-G solvation = 13.087154 kcal Electronic energy + Delta-G solvation = -26754.478613 eV Core-core repulsion = 23331.678151 eV Total energy + Delta-G solvation = -3422.800462 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.57340 -38.71205 -36.39371 -34.44122 -33.71452 -32.09494 -30.97658 -30.08052 -29.37542 -27.09621 -26.33891 -25.02160 -24.34919 -23.64123 -22.77644 -22.06576 -20.58163 -19.68110 -19.07977 -17.03569 -16.60995 -16.04043 -15.78847 -15.25399 -15.00528 -14.73161 -14.59941 -14.30188 -14.02259 -13.79388 -13.68592 -13.39666 -13.28254 -13.09497 -12.93892 -12.80171 -12.32713 -12.12558 -11.98657 -11.78495 -11.67557 -11.53356 -11.38389 -11.31579 -11.29929 -11.09506 -10.89864 -10.75091 -10.60695 -10.21560 -10.07389 -9.69240 -9.38422 -8.98150 -8.67280 -8.54182 -8.44851 -8.27166 -8.06335 -6.29815 -3.97617 1.07774 1.14076 3.44601 3.46542 3.48553 3.63608 3.67072 4.06405 4.57317 4.59334 4.60577 4.80469 4.82041 4.96903 5.03455 5.07511 5.17525 5.24539 5.28679 5.31214 5.38318 5.43295 5.46584 5.50986 5.52726 5.58612 5.62649 5.64973 5.72405 5.78289 5.82320 5.86021 5.95589 6.07129 6.09083 6.11738 6.19691 6.30142 6.32808 6.41925 6.45711 6.63536 6.66653 6.75662 6.91586 7.07446 7.13023 7.24507 7.29868 7.36795 7.46487 7.63617 8.30295 8.53313 8.95518 9.73686 11.10579 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.023658 B = 0.002411 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.262657 B =11609.868265 C =12062.134422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.086 4.086 3 C -0.122 4.122 4 C -0.115 4.115 5 C -0.068 4.068 6 C -0.106 4.106 7 C 0.094 3.906 8 N -0.502 5.502 9 C 0.065 3.935 10 C 0.057 3.943 11 N -0.535 5.535 12 C 0.061 3.939 13 C -0.070 4.070 14 H 0.055 0.945 15 C -0.120 4.120 16 C 0.014 3.986 17 C -0.592 4.592 18 H 0.049 0.951 19 C 0.012 3.988 20 N -0.916 5.916 21 Si 1.067 2.933 22 H -0.283 1.283 23 H -0.289 1.289 24 H -0.288 1.288 25 C 0.057 3.943 26 C 0.065 3.935 27 C -0.143 4.143 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.046 0.954 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.040 0.960 40 H 0.031 0.969 41 H 0.066 0.934 42 H 0.044 0.956 43 H 0.037 0.963 44 H 0.051 0.949 45 H 0.002 0.998 46 H 0.006 0.994 47 H 0.268 0.732 48 H 0.039 0.961 49 H 0.079 0.921 50 H 0.046 0.954 51 H 0.076 0.924 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.664 26.400 -5.726 28.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.140 4.140 4 C -0.134 4.134 5 C -0.069 4.069 6 C -0.163 4.163 7 C 0.000 4.000 8 N -0.224 5.224 9 C -0.062 4.062 10 C -0.071 4.071 11 N -0.260 5.260 12 C -0.066 4.066 13 C -0.089 4.089 14 H 0.074 0.926 15 C -0.177 4.177 16 C -0.024 4.024 17 C -0.630 4.630 18 H 0.067 0.933 19 C -0.191 4.191 20 N -0.553 5.553 21 Si 0.895 3.105 22 H -0.209 1.209 23 H -0.215 1.215 24 H -0.215 1.215 25 C -0.072 4.072 26 C -0.061 4.061 27 C -0.163 4.163 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.058 0.942 40 H 0.049 0.951 41 H 0.085 0.915 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.070 0.930 45 H 0.021 0.979 46 H 0.024 0.976 47 H 0.078 0.922 48 H 0.057 0.943 49 H 0.097 0.903 50 H 0.064 0.936 51 H 0.094 0.906 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.439 24.894 -4.979 26.455 hybrid contribution -0.220 1.483 -0.793 1.696 sum -7.658 26.377 -5.772 28.067 Atomic orbital electron populations 1.20788 0.91294 1.02669 1.02318 1.19775 0.95966 0.92899 0.99997 1.21001 0.94182 0.97335 1.01514 1.20966 0.94028 0.97378 1.01016 1.19823 0.96500 0.91382 0.99156 1.20649 0.90696 1.03027 1.01920 1.18650 0.89994 0.90887 1.00440 1.59796 1.56199 1.02974 1.03406 1.22229 0.99109 0.93818 0.91030 1.22176 0.97468 0.92729 0.94730 1.62180 1.57952 1.04444 1.01413 1.22315 0.94722 0.88797 1.00807 1.21020 0.95956 0.95620 0.96308 0.92627 1.21549 0.96436 0.99468 1.00293 1.19262 0.94390 0.91851 0.96883 1.22022 1.16566 1.04524 1.19917 0.93279 1.25815 0.95309 0.97229 1.00772 1.70779 1.22839 1.39914 1.21762 0.83576 0.75542 0.76098 0.75254 1.20872 1.21539 1.21503 1.22151 0.98063 0.93499 0.93448 1.22197 0.98537 0.93218 0.92181 1.21570 0.94587 0.98014 1.02112 0.91217 0.91614 0.91628 0.86245 0.85944 0.91634 0.92352 0.90213 0.93547 0.90472 0.89601 0.94224 0.95096 0.91536 0.93740 0.94376 0.92975 0.97934 0.97589 0.92210 0.94275 0.90295 0.93595 0.90586 0.86209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.01 36.01 0.36 -0.46 16 2 C -0.09 -0.80 5.88 -104.66 -0.62 -1.42 16 3 C -0.12 -1.06 9.70 -39.55 -0.38 -1.45 16 4 C -0.12 -1.03 9.72 -39.61 -0.38 -1.42 16 5 C -0.07 -0.69 5.90 -104.42 -0.62 -1.31 16 6 C -0.11 -0.96 9.82 36.00 0.35 -0.61 16 7 C 0.09 1.05 4.70 -83.79 -0.39 0.66 16 8 N -0.50 -5.82 3.55 -170.96 -0.61 -6.43 16 9 C 0.06 0.79 5.36 -3.76 -0.02 0.77 16 10 C 0.06 0.79 5.43 -3.77 -0.02 0.77 16 11 N -0.54 -7.90 3.97 -234.46 -0.93 -8.83 16 12 C 0.06 1.05 4.40 -3.82 -0.02 1.04 16 13 C -0.07 -1.45 2.39 -90.62 -0.22 -1.66 16 14 H 0.06 1.18 6.78 -51.93 -0.35 0.83 16 15 C -0.12 -2.38 8.86 37.16 0.33 -2.05 16 16 C 0.01 0.35 3.76 -27.89 -0.10 0.24 16 17 C -0.59 -16.88 8.47 -34.44 -0.29 -17.18 16 18 H 0.05 1.38 7.06 -52.49 -0.37 1.01 16 19 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 20 N -0.92 -28.44 13.65 55.43 0.76 -27.69 16 21 Si 1.07 25.68 29.90 -169.99 -5.08 20.59 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.06 0.72 5.56 -3.77 -0.02 0.70 16 26 C 0.07 0.75 5.30 -3.76 -0.02 0.73 16 27 C -0.14 -1.52 8.29 -39.38 -0.33 -1.85 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 30 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 31 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 32 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.45 8.12 -51.93 -0.42 0.02 16 35 H 0.08 0.82 7.31 -51.93 -0.38 0.44 16 36 H 0.05 0.59 7.48 -51.93 -0.39 0.20 16 37 H 0.08 0.89 8.13 -51.93 -0.42 0.47 16 38 H 0.09 1.27 6.75 -51.93 -0.35 0.92 16 39 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.03 0.55 7.99 -51.93 -0.41 0.14 16 41 H 0.07 1.14 7.84 -51.92 -0.41 0.74 16 42 H 0.04 0.79 7.59 -51.93 -0.39 0.40 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.05 1.10 7.10 -51.93 -0.37 0.74 16 45 H 0.00 0.07 8.01 -51.93 -0.42 -0.35 16 46 H 0.01 0.16 8.00 -51.93 -0.42 -0.26 16 47 H 0.27 8.28 7.22 -40.82 -0.29 7.98 16 48 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.08 0.95 8.00 -51.92 -0.42 0.54 16 50 H 0.05 0.55 7.21 -51.93 -0.37 0.17 16 51 H 0.08 0.81 8.13 -51.93 -0.42 0.38 16 52 H 0.12 1.29 7.06 -52.49 -0.37 0.91 16 LS Contribution 400.18 15.07 6.03 6.03 Total: -1.00 -30.74 400.18 -11.89 -42.63 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -9.57 Total: -2.07 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: -2.49 Total: -24.24 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: -0.78 Total: -42.94 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -5.08 Total: 20.59 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.74 -11.89 -42.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001621209057.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.719 kcal (2) G-P(sol) polarization free energy of solvation -30.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds