Wall clock time and date at job start Tue Mar 31 2020 10:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38304 * 119.95938 * 2 1 4 4 C 1.38265 * 120.15010 * 180.02562 * 3 2 1 5 5 C 1.38129 * 120.07442 * 359.74008 * 4 3 2 6 6 C 1.50691 * 120.04313 * 180.27627 * 5 4 3 7 7 C 1.38898 * 119.91897 * 0.53463 * 5 4 3 8 8 N 1.39671 * 120.07095 * 179.74783 * 7 5 4 9 9 C 1.46958 * 111.00053 * 115.36403 * 8 7 5 10 10 C 1.53053 * 109.36285 * 183.18584 * 9 8 7 11 11 N 1.46950 * 109.36582 * 301.59625 * 10 9 8 12 12 C 1.46903 * 110.99929 * 183.18746 * 11 10 9 13 13 C 1.53000 * 109.47043 * 76.18944 * 12 11 10 14 14 H 1.08991 * 109.47178 * 304.20755 * 13 12 11 15 15 C 1.52998 * 109.46969 * 64.20808 * 13 12 11 16 16 C 1.52995 * 109.47205 * 184.20440 * 13 12 11 17 17 C 1.50698 * 109.47206 * 174.99923 * 16 13 12 18 18 H 1.07997 * 119.99899 * 0.02562 * 17 16 13 19 19 C 1.37878 * 119.99926 * 180.02562 * 17 16 13 20 20 N 1.31509 * 120.00260 * 359.72255 * 19 17 16 21 21 Si 1.86802 * 119.99950 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47391 * 179.72309 * 21 19 17 23 23 H 1.48499 * 109.47299 * 299.72900 * 21 19 17 24 24 H 1.48501 * 109.47067 * 59.72515 * 21 19 17 25 25 C 1.46958 * 110.87849 * 59.32293 * 11 10 9 26 26 C 1.46960 * 110.99790 * 239.15905 * 8 7 5 27 27 C 1.38079 * 119.96339 * 180.02562 * 2 1 3 28 28 H 1.09006 * 109.47281 * 269.97795 * 1 2 3 29 29 H 1.09001 * 109.47438 * 29.97914 * 1 2 3 30 30 H 1.08996 * 109.47415 * 149.98049 * 1 2 3 31 31 H 1.08005 * 119.92950 * 0.02562 * 3 2 1 32 32 H 1.07996 * 119.96657 * 180.02562 * 4 3 2 33 33 H 1.09002 * 109.47585 * 275.04556 * 6 5 4 34 34 H 1.09001 * 109.46734 * 35.04251 * 6 5 4 35 35 H 1.08997 * 109.47399 * 155.04395 * 6 5 4 36 36 H 1.08994 * 109.49207 * 63.22012 * 9 8 7 37 37 H 1.08997 * 109.48729 * 303.14866 * 9 8 7 38 38 H 1.08999 * 109.48738 * 181.62570 * 10 9 8 39 39 H 1.09007 * 109.48889 * 61.56638 * 10 9 8 40 40 H 1.08991 * 109.47444 * 316.18833 * 12 11 10 41 41 H 1.09009 * 109.47052 * 196.18898 * 12 11 10 42 42 H 1.09003 * 109.47375 * 305.01404 * 15 13 12 43 43 H 1.09002 * 109.47811 * 65.01575 * 15 13 12 44 44 H 1.09004 * 109.47144 * 185.01866 * 15 13 12 45 45 H 1.08996 * 109.46998 * 55.00103 * 16 13 12 46 46 H 1.09002 * 109.47693 * 295.00109 * 16 13 12 47 47 H 0.97005 * 119.99972 * 0.27699 * 20 19 17 48 48 H 1.08998 * 109.48863 * 60.64826 * 25 11 10 49 49 H 1.09011 * 109.48769 * 180.70990 * 25 11 10 50 50 H 1.08990 * 109.49199 * 296.77828 * 26 8 7 51 51 H 1.09006 * 109.48607 * 56.84838 * 26 8 7 52 52 H 1.07996 * 120.03783 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1982 0.0000 4 6 3.5803 1.2028 -0.0005 5 6 4.2765 0.0098 0.0044 6 6 5.7834 0.0157 0.0101 7 6 3.5859 -1.1953 -0.0014 8 7 4.2867 -2.4035 -0.0018 9 6 4.0378 -3.1571 1.2350 10 6 4.8830 -4.4331 1.2305 11 7 4.5434 -5.2384 0.0492 12 6 5.2804 -6.5092 0.0487 13 6 4.6447 -7.4678 1.0576 14 1 4.6158 -6.9953 2.0393 15 6 3.2207 -7.8061 0.6122 16 6 5.4737 -8.7515 1.1336 17 6 4.9196 -9.6441 2.2140 18 1 4.0617 -9.3276 2.7886 19 6 5.5079 -10.8647 2.4688 20 7 6.5492 -11.2525 1.7655 21 14 4.8206 -11.9715 3.8075 22 1 5.6215 -13.2200 3.8773 23 1 4.8858 -11.2678 5.1136 24 1 3.4078 -12.3065 3.4959 25 6 4.7923 -4.4848 -1.1876 26 6 3.9470 -3.2089 -1.1832 27 6 2.1966 -1.1962 -0.0005 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5141 31 1 1.6558 2.1325 0.0004 32 1 4.1166 2.1402 -0.0001 33 1 6.1503 0.1056 -1.0124 34 1 6.1411 0.8596 0.5999 35 1 6.1487 -0.9137 0.4468 36 1 2.9818 -3.4207 1.2940 37 1 4.3087 -2.5445 2.0948 38 1 4.6783 -5.0080 2.1337 39 1 5.9401 -4.1690 1.1990 40 1 6.3189 -6.3270 0.3252 41 1 5.2417 -6.9513 -0.9469 42 1 2.6553 -6.8848 0.4719 43 1 3.2551 -8.3578 -0.3273 44 1 2.7369 -8.4167 1.3746 45 1 6.5094 -8.5020 1.3642 46 1 5.4295 -9.2699 0.1758 47 1 6.9060 -10.6779 1.0700 48 1 5.8483 -4.2213 -1.2466 49 1 4.5214 -5.0975 -2.0476 50 1 2.8901 -3.4730 -1.1517 51 1 4.1518 -2.6339 -2.0864 52 1 1.6567 -2.1315 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001621209057.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:52 Heat of formation + Delta-G solvation = -1.963392 kcal Electronic energy + Delta-G solvation = -26755.131253 eV Core-core repulsion = 23331.678151 eV Total energy + Delta-G solvation = -3423.453103 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.42409 -39.74039 -37.73445 -35.92447 -34.59896 -33.91443 -32.01306 -31.00140 -30.05172 -28.62367 -27.96850 -26.11078 -25.49075 -24.69060 -24.32968 -23.18074 -21.32573 -20.86622 -20.60942 -18.90444 -17.78607 -16.79713 -16.58503 -16.40298 -16.10739 -16.03774 -15.83536 -15.58923 -15.37458 -15.10136 -14.80584 -14.65271 -14.21506 -14.02832 -13.79179 -13.67041 -13.52987 -13.42829 -13.40552 -13.02296 -12.91847 -12.72447 -12.55482 -12.42756 -12.35854 -12.29939 -12.09480 -12.09200 -11.96209 -11.89355 -11.69886 -11.39883 -11.27387 -10.56137 -10.51846 -9.71707 -9.57312 -9.30452 -9.25921 -8.65057 -6.33925 0.34463 0.42780 1.51944 1.60540 1.79501 2.57366 2.72879 2.74094 2.86390 3.18846 3.77841 3.86718 3.94248 3.96309 4.07782 4.12952 4.18097 4.25799 4.29115 4.33282 4.36650 4.41894 4.42792 4.49453 4.66574 4.73587 4.74699 4.76046 4.78632 4.79728 4.82621 4.86162 4.87735 4.90590 4.93192 4.96273 5.05273 5.07826 5.18130 5.31841 5.36760 5.43699 5.47068 5.48378 5.61961 5.63287 5.69936 5.80541 5.92372 6.00341 6.08892 6.13411 6.23086 6.45240 6.62897 7.46745 8.75539 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.023658 B = 0.002411 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.262657 B =11609.868265 C =12062.134422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C -0.123 4.123 4 C -0.116 4.116 5 C -0.081 4.081 6 C -0.101 4.101 7 C 0.076 3.924 8 N -0.502 5.502 9 C 0.075 3.925 10 C 0.060 3.940 11 N -0.536 5.536 12 C 0.074 3.926 13 C -0.061 4.061 14 H 0.049 0.951 15 C -0.109 4.109 16 C 0.017 3.983 17 C -0.603 4.603 18 H 0.051 0.949 19 C -0.043 4.043 20 N -0.942 5.942 21 Si 1.115 2.885 22 H -0.285 1.285 23 H -0.269 1.269 24 H -0.269 1.269 25 C 0.059 3.941 26 C 0.073 3.927 27 C -0.155 4.155 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.040 0.960 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.035 0.965 40 H 0.022 0.978 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.034 0.966 44 H 0.034 0.966 45 H -0.019 1.019 46 H -0.013 1.013 47 H 0.254 0.746 48 H 0.037 0.963 49 H 0.087 0.913 50 H 0.042 0.958 51 H 0.087 0.913 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.137 28.545 -5.594 30.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.141 4.141 4 C -0.135 4.135 5 C -0.082 4.082 6 C -0.158 4.158 7 C -0.018 4.018 8 N -0.223 5.223 9 C -0.052 4.052 10 C -0.069 4.069 11 N -0.261 5.261 12 C -0.054 4.054 13 C -0.080 4.080 14 H 0.068 0.932 15 C -0.166 4.166 16 C -0.021 4.021 17 C -0.641 4.641 18 H 0.069 0.931 19 C -0.240 4.240 20 N -0.580 5.580 21 Si 0.936 3.064 22 H -0.210 1.210 23 H -0.195 1.195 24 H -0.194 1.194 25 C -0.069 4.069 26 C -0.054 4.054 27 C -0.175 4.175 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.161 0.839 32 H 0.162 0.838 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.054 0.946 40 H 0.040 0.960 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.053 0.947 44 H 0.053 0.947 45 H -0.001 1.001 46 H 0.005 0.995 47 H 0.063 0.937 48 H 0.056 0.944 49 H 0.105 0.895 50 H 0.060 0.940 51 H 0.105 0.895 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.923 27.077 -4.861 28.921 hybrid contribution 0.236 0.913 -0.865 1.279 sum -8.687 27.990 -5.725 29.861 Atomic orbital electron populations 1.20817 0.89869 1.03388 1.02846 1.20073 0.97169 0.92745 0.99419 1.21331 0.94328 0.98045 1.00375 1.21261 0.94384 0.97779 1.00048 1.20037 0.97095 0.91585 0.99446 1.20609 0.90142 1.02794 1.02273 1.18750 0.90327 0.90795 1.01922 1.59777 1.56448 1.03145 1.02958 1.22085 0.98198 0.93063 0.91848 1.22147 0.97614 0.93226 0.93865 1.62119 1.57305 1.03944 1.02731 1.22015 0.94119 0.89595 0.99654 1.20837 0.95974 0.93958 0.97245 0.93248 1.21431 0.95684 1.00136 0.99365 1.19193 0.93958 0.93829 0.95093 1.22416 1.16416 1.05017 1.20285 0.93105 1.27390 0.94911 0.99280 1.02392 1.70917 1.24361 1.40087 1.22593 0.82966 0.75745 0.74342 0.73325 1.21016 1.19469 1.19443 1.22204 0.98293 0.93946 0.92489 1.22130 0.97886 0.92675 0.92735 1.21593 0.94508 0.98385 1.03012 0.90706 0.90070 0.91779 0.83871 0.83752 0.91248 0.90889 0.91816 0.94145 0.89894 0.90790 0.94628 0.95955 0.91260 0.91470 0.94700 0.94675 1.00086 0.99463 0.93691 0.94450 0.89464 0.94015 0.89453 0.86936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 10.01 71.24 0.71 -0.67 16 2 C -0.09 -1.58 5.88 -19.89 -0.12 -1.70 16 3 C -0.12 -1.82 9.70 22.29 0.22 -1.60 16 4 C -0.12 -1.80 9.72 22.25 0.22 -1.58 16 5 C -0.08 -1.53 5.90 -19.74 -0.12 -1.64 16 6 C -0.10 -1.69 9.82 71.23 0.70 -0.99 16 7 C 0.08 1.61 4.70 38.22 0.18 1.79 16 8 N -0.50 -11.23 3.55 -694.78 -2.47 -13.70 16 9 C 0.07 1.78 5.36 86.31 0.46 2.25 16 10 C 0.06 1.65 5.43 86.31 0.47 2.12 16 11 N -0.54 -15.56 3.97 -895.69 -3.56 -19.12 16 12 C 0.07 2.58 4.40 86.30 0.38 2.96 16 13 C -0.06 -2.56 2.39 -10.80 -0.03 -2.58 16 14 H 0.05 2.12 6.78 -2.39 -0.02 2.11 16 15 C -0.11 -4.27 8.86 71.98 0.64 -3.63 16 16 C 0.02 0.89 3.76 29.85 0.11 1.00 16 17 C -0.60 -34.91 8.47 25.60 0.22 -34.70 16 18 H 0.05 2.87 7.06 -2.91 -0.02 2.85 16 19 C -0.04 -2.55 5.46 84.66 0.46 -2.08 16 20 N -0.94 -59.71 13.65 21.45 0.29 -59.42 16 21 Si 1.11 51.33 29.90 68.60 2.05 53.38 16 22 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 24 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 25 C 0.06 1.43 5.56 86.31 0.48 1.91 16 26 C 0.07 1.58 5.30 86.31 0.46 2.04 16 27 C -0.15 -3.15 8.29 22.40 0.19 -2.96 16 28 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.08 0.74 8.08 -2.39 -0.02 0.72 16 30 H 0.06 0.80 8.08 -2.39 -0.02 0.78 16 31 H 0.14 1.39 8.06 -2.91 -0.02 1.36 16 32 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 0.97 8.12 -2.39 -0.02 0.95 16 35 H 0.06 1.27 7.31 -2.39 -0.02 1.25 16 36 H 0.04 1.01 7.48 -2.39 -0.02 1.00 16 37 H 0.08 1.87 8.13 -2.39 -0.02 1.86 16 38 H 0.07 2.21 6.75 -2.39 -0.02 2.19 16 39 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.02 0.81 7.99 -2.39 -0.02 0.79 16 41 H 0.07 2.37 7.84 -2.38 -0.02 2.35 16 42 H 0.07 2.32 7.59 -2.39 -0.02 2.30 16 43 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.03 1.47 7.10 -2.39 -0.02 1.45 16 45 H -0.02 -1.09 8.01 -2.39 -0.02 -1.11 16 46 H -0.01 -0.73 8.00 -2.39 -0.02 -0.75 16 47 H 0.25 16.31 7.22 -92.70 -0.67 15.64 16 48 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.09 1.98 8.00 -2.38 -0.02 1.97 16 50 H 0.04 0.96 7.21 -2.39 -0.02 0.94 16 51 H 0.09 1.73 8.13 -2.38 -0.02 1.71 16 52 H 0.11 2.37 7.06 -2.91 -0.02 2.35 16 Total: -1.00 -66.48 400.18 2.90 -63.58 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 0.95 Total: 15.37 kcal Atomic # 6 Polarization: -45.72 SS G_CDS: 5.63 Total: -40.09 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -5.73 Total: -92.24 kcal Atomic # 14 Polarization: 51.33 SS G_CDS: 2.05 Total: 53.38 kcal Total: -66.48 2.90 -63.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001621209057.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.614 kcal (2) G-P(sol) polarization free energy of solvation -66.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds