Wall clock time and date at job start Tue Mar 31 2020 10:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.46876 * 2 1 4 4 C 1.38237 * 119.99655 * 89.99961 * 3 2 1 5 5 C 1.38241 * 119.99622 * 179.97438 * 4 3 2 6 6 C 1.38232 * 120.00044 * 359.96072 * 5 4 3 7 7 C 1.50697 * 119.99753 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.47025 * 90.00012 * 7 6 5 9 9 C 1.46962 * 111.00155 * 169.99641 * 8 7 6 10 10 C 1.53050 * 109.36637 * 183.19015 * 9 8 7 11 11 N 1.46962 * 109.36349 * 301.60151 * 10 9 8 12 12 C 1.46901 * 111.00040 * 183.18911 * 11 10 9 13 13 H 1.09001 * 109.46814 * 188.52639 * 12 11 10 14 14 C 1.52998 * 109.46789 * 308.52750 * 12 11 10 15 15 C 1.52997 * 109.46890 * 68.52557 * 12 11 10 16 16 C 1.50707 * 109.47491 * 63.71774 * 15 12 11 17 17 H 1.08001 * 119.99153 * 5.07150 * 16 15 12 18 18 C 1.37872 * 120.00530 * 185.07247 * 16 15 12 19 19 N 1.31518 * 119.99711 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00311 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46976 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47191 * 119.99829 * 20 18 16 23 23 H 1.48496 * 109.47033 * 240.00064 * 20 18 16 24 24 C 1.46954 * 110.87991 * 59.31820 * 11 10 9 25 25 C 1.46954 * 111.00196 * 293.79795 * 8 7 6 26 26 C 1.38233 * 120.00140 * 0.27413 * 6 5 4 27 27 C 1.38233 * 120.00250 * 269.97919 * 3 2 1 28 28 H 1.08995 * 109.47070 * 299.99646 * 1 2 3 29 29 H 1.08997 * 109.47607 * 60.00383 * 1 2 3 30 30 H 1.09005 * 109.46862 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47122 * 240.00225 * 2 1 3 32 32 H 1.08992 * 109.47439 * 120.00316 * 2 1 3 33 33 H 1.07998 * 120.00337 * 359.97438 * 4 3 2 34 34 H 1.08001 * 119.99705 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.47463 * 330.00191 * 7 6 5 36 36 H 1.09005 * 109.47390 * 209.99729 * 7 6 5 37 37 H 1.09000 * 109.48632 * 63.22213 * 9 8 7 38 38 H 1.08996 * 109.50674 * 303.17000 * 9 8 7 39 39 H 1.09004 * 109.48915 * 181.63654 * 10 9 8 40 40 H 1.08994 * 109.50876 * 61.57652 * 10 9 8 41 41 H 1.09004 * 109.46751 * 179.97438 * 14 12 11 42 42 H 1.08990 * 109.47126 * 299.99642 * 14 12 11 43 43 H 1.09001 * 109.47533 * 60.00329 * 14 12 11 44 44 H 1.09000 * 109.47328 * 183.71523 * 15 12 11 45 45 H 1.08998 * 109.47581 * 303.71761 * 15 12 11 46 46 H 0.96997 * 120.00027 * 180.02562 * 19 18 16 47 47 H 1.09000 * 109.48779 * 60.64902 * 24 11 10 48 48 H 1.09004 * 109.48745 * 180.71000 * 24 11 10 49 49 H 1.08997 * 109.48595 * 296.78121 * 25 8 7 50 50 H 1.09004 * 109.48534 * 56.84534 * 25 8 7 51 51 H 1.08000 * 120.00254 * 179.73282 * 26 6 5 52 52 H 1.08007 * 119.99866 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2626 2.0725 1.1972 5 6 2.7238 3.3757 1.1972 6 6 2.9555 4.0268 0.0001 7 6 3.4578 5.4476 0.0001 8 7 4.9268 5.4477 0.0017 9 6 5.4537 6.7988 -0.2365 10 6 6.9816 6.7426 -0.3065 11 7 7.5069 6.1894 0.9496 12 6 8.9759 6.1894 0.9512 13 1 9.3382 5.6402 1.8202 14 6 9.4872 5.5191 -0.3255 15 6 9.4857 7.6307 1.0098 16 6 9.0586 8.2623 2.3098 17 1 8.5527 7.6695 3.0575 18 6 9.3135 9.5968 2.5445 19 7 9.9291 10.3188 1.6337 20 14 8.7834 10.3797 4.1555 21 1 8.1141 9.3614 5.0041 22 1 9.9760 10.9092 4.8645 23 1 7.8383 11.4911 3.8783 24 6 6.9800 4.8384 1.1878 25 6 5.4521 4.8945 1.2578 26 6 2.7205 3.3769 -1.1971 27 6 2.2631 2.0724 -1.1971 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.0822 1.5635 2.1325 34 1 2.9034 3.8849 2.1325 35 1 3.0935 5.9618 0.8895 36 1 3.0954 5.9612 -0.8905 37 1 5.1509 7.4561 0.5786 38 1 5.0604 7.1820 -1.1780 39 1 7.3760 7.7480 -0.4541 40 1 7.2847 6.1071 -1.1385 41 1 10.5772 5.5195 -0.3245 42 1 9.1240 4.4923 -0.3672 43 1 9.1249 6.0683 -1.1945 44 1 10.5738 7.6343 0.9445 45 1 9.0699 8.1974 0.1767 46 1 10.1088 11.2575 1.7990 47 1 7.2827 4.1811 0.3727 48 1 7.3733 4.4554 2.1294 49 1 5.1492 5.5302 2.0898 50 1 5.0576 3.8892 1.4054 51 1 2.8974 3.8871 -2.1324 52 1 2.0830 1.5633 -2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654651184.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:33 Heat of formation + Delta-G solvation = 21.828261 kcal Electronic energy + Delta-G solvation = -26787.066871 eV Core-core repulsion = 23364.645452 eV Total energy + Delta-G solvation = -3422.421419 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.92200 -38.87732 -36.36779 -34.36411 -32.76420 -31.27299 -31.08690 -30.56081 -29.48552 -27.29278 -26.65324 -24.43258 -23.48064 -22.94340 -22.66767 -22.42119 -20.58322 -19.95084 -18.53056 -16.40781 -16.15606 -15.91593 -15.80133 -15.39708 -14.83119 -14.52534 -14.49484 -14.31398 -14.01811 -13.82393 -13.75747 -13.54991 -13.39167 -12.97961 -12.83852 -12.23512 -12.21938 -11.95635 -11.86945 -11.73007 -11.61207 -11.43151 -11.33305 -11.15374 -11.01161 -10.94479 -10.82059 -10.60998 -10.50884 -10.34814 -10.16226 -9.87413 -9.14058 -8.98614 -8.92731 -8.67545 -8.24385 -8.14514 -7.38903 -5.86946 -3.84082 1.21116 1.32495 3.38330 3.45804 3.51232 3.56643 4.23754 4.51944 4.56866 4.60803 4.61863 4.78908 4.88588 4.90846 5.06846 5.20703 5.25844 5.26384 5.37641 5.44861 5.49545 5.50865 5.55208 5.59230 5.69670 5.70815 5.75553 5.83346 5.84833 5.86045 5.89740 5.97417 5.98873 6.02651 6.06479 6.15592 6.28708 6.32846 6.41911 6.49080 6.50596 6.56147 6.63883 6.73847 6.90852 7.04035 7.17492 7.24767 7.58170 7.72092 7.95699 8.07145 8.15041 8.60726 9.21338 9.77038 11.25079 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.021769 B = 0.002629 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.916515 B =10647.815112 C =11051.509590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.087 4.087 4 C -0.119 4.119 5 C -0.110 4.110 6 C -0.074 4.074 7 C 0.091 3.909 8 N -0.533 5.533 9 C 0.059 3.941 10 C 0.060 3.940 11 N -0.510 5.510 12 C 0.087 3.913 13 H 0.067 0.933 14 C -0.182 4.182 15 C 0.030 3.970 16 C -0.485 4.485 17 H 0.058 0.942 18 C 0.049 3.951 19 N -0.904 5.904 20 Si 0.888 3.112 21 H -0.274 1.274 22 H -0.288 1.288 23 H -0.287 1.287 24 C 0.056 3.944 25 C 0.058 3.942 26 C -0.096 4.096 27 C -0.120 4.120 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.042 0.958 36 H 0.080 0.920 37 H 0.044 0.956 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.034 0.966 41 H 0.054 0.946 42 H 0.039 0.961 43 H 0.054 0.946 44 H 0.015 0.985 45 H 0.022 0.978 46 H 0.256 0.744 47 H 0.032 0.968 48 H 0.071 0.929 49 H 0.040 0.960 50 H 0.074 0.926 51 H 0.121 0.879 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.245 -17.973 -5.554 25.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.088 4.088 4 C -0.137 4.137 5 C -0.129 4.129 6 C -0.074 4.074 7 C -0.036 4.036 8 N -0.258 5.258 9 C -0.069 4.069 10 C -0.069 4.069 11 N -0.234 5.234 12 C -0.021 4.021 13 H 0.085 0.915 14 C -0.241 4.241 15 C -0.007 4.007 16 C -0.524 4.524 17 H 0.077 0.923 18 C -0.150 4.150 19 N -0.545 5.545 20 Si 0.717 3.283 21 H -0.199 1.199 22 H -0.214 1.214 23 H -0.214 1.214 24 C -0.073 4.073 25 C -0.070 4.070 26 C -0.115 4.115 27 C -0.138 4.138 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.063 0.937 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.052 0.948 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.033 0.967 45 H 0.040 0.960 46 H 0.066 0.934 47 H 0.050 0.950 48 H 0.089 0.911 49 H 0.058 0.942 50 H 0.092 0.908 51 H 0.139 0.861 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -17.180 -17.776 -5.569 25.341 hybrid contribution -0.208 0.580 0.871 1.067 sum -17.387 -17.196 -4.698 24.902 Atomic orbital electron populations 1.21745 0.94847 1.01552 1.02202 1.20530 0.96069 0.92879 1.02727 1.19855 0.99526 0.96097 0.93281 1.20959 1.00467 0.94892 0.97410 1.21074 0.99248 0.94880 0.97665 1.19762 0.98474 0.96083 0.93122 1.21027 0.88538 0.92545 1.01490 1.62218 1.05570 1.22967 1.35044 1.22202 0.95848 0.88316 1.00548 1.22130 0.92656 1.01122 0.90951 1.62286 1.08475 1.19087 1.33583 1.21891 0.85211 1.00216 0.94750 0.91509 1.22503 1.01378 0.99540 1.00711 1.19190 0.95352 0.88337 0.97836 1.21175 1.35394 0.94303 1.01479 0.92336 1.24996 0.95883 0.97564 0.96524 1.69973 1.43125 1.07427 1.33985 0.86590 0.78092 0.79237 0.84372 1.19883 1.21427 1.21387 1.22114 0.93557 0.91369 1.00266 1.22213 0.95291 0.99425 0.90106 1.20991 0.98289 0.94521 0.97691 1.20984 1.00532 0.94952 0.97349 0.92584 0.92597 0.92531 0.91169 0.91161 0.86382 0.86286 0.94010 0.90147 0.93727 0.91002 0.89208 0.94797 0.92698 0.94161 0.92740 0.96720 0.95968 0.93434 0.94965 0.91077 0.94155 0.90812 0.86083 0.86406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.16 0.37 -0.56 16 2 C -0.08 -0.61 6.06 -27.88 -0.17 -0.78 16 3 C -0.09 -0.82 5.13 -104.62 -0.54 -1.36 16 4 C -0.12 -1.18 9.70 -39.58 -0.38 -1.56 16 5 C -0.11 -1.19 7.92 -39.58 -0.31 -1.50 16 6 C -0.07 -0.84 4.89 -104.63 -0.51 -1.35 16 7 C 0.09 1.09 5.12 -4.98 -0.03 1.07 16 8 N -0.53 -7.56 4.70 -235.91 -1.11 -8.67 16 9 C 0.06 0.91 5.61 -3.76 -0.02 0.89 16 10 C 0.06 1.07 4.70 -3.76 -0.02 1.06 16 11 N -0.51 -9.87 4.32 -226.49 -0.98 -10.85 16 12 C 0.09 1.80 2.26 -67.71 -0.15 1.65 16 13 H 0.07 1.40 7.98 -51.93 -0.41 0.99 16 14 C -0.18 -3.23 8.39 37.16 0.31 -2.92 16 15 C 0.03 0.76 4.40 -27.88 -0.12 0.64 16 16 C -0.48 -13.62 8.80 -34.44 -0.30 -13.92 16 17 H 0.06 1.65 7.75 -52.49 -0.41 1.25 16 18 C 0.05 1.42 5.46 -17.82 -0.10 1.33 16 19 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 20 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 21 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 C 0.06 0.92 5.36 -3.77 -0.02 0.90 16 25 C 0.06 0.85 5.25 -3.77 -0.02 0.83 16 26 C -0.10 -1.03 9.70 -39.58 -0.38 -1.41 16 27 C -0.12 -1.17 9.70 -39.58 -0.38 -1.55 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 32 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 33 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 34 H 0.12 1.21 7.99 -52.49 -0.42 0.80 16 35 H 0.04 0.50 8.06 -51.93 -0.42 0.08 16 36 H 0.08 0.88 7.97 -51.93 -0.41 0.46 16 37 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.98 8.07 -51.93 -0.42 0.56 16 39 H 0.09 1.83 6.37 -51.93 -0.33 1.50 16 40 H 0.03 0.59 6.40 -51.93 -0.33 0.26 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.04 0.65 6.85 -51.93 -0.36 0.29 16 43 H 0.05 0.96 6.39 -51.93 -0.33 0.63 16 44 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.02 0.60 6.42 -51.93 -0.33 0.26 16 46 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.03 0.53 6.85 -51.93 -0.36 0.18 16 48 H 0.07 1.14 8.05 -51.93 -0.42 0.72 16 49 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 50 H 0.07 1.00 5.95 -51.93 -0.31 0.69 16 51 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 52 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 LS Contribution 398.27 15.07 6.00 6.00 Total: -1.00 -30.30 398.27 -12.62 -42.92 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -9.46 Total: -1.44 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -2.78 Total: -18.58 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: -1.35 Total: -46.06 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.30 -12.62 -42.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654651184.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.747 kcal (2) G-P(sol) polarization free energy of solvation -30.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds