Wall clock time and date at job start Tue Mar 31 2020 10:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.46876 * 2 1 4 4 C 1.38237 * 119.99655 * 89.99961 * 3 2 1 5 5 C 1.38241 * 119.99622 * 179.97438 * 4 3 2 6 6 C 1.38232 * 120.00044 * 359.96072 * 5 4 3 7 7 C 1.50697 * 119.99753 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.47025 * 90.00012 * 7 6 5 9 9 C 1.46962 * 111.00155 * 169.99641 * 8 7 6 10 10 C 1.53050 * 109.36637 * 183.19015 * 9 8 7 11 11 N 1.46962 * 109.36349 * 301.60151 * 10 9 8 12 12 C 1.46901 * 111.00040 * 183.18911 * 11 10 9 13 13 H 1.09001 * 109.46814 * 188.52639 * 12 11 10 14 14 C 1.52998 * 109.46789 * 308.52750 * 12 11 10 15 15 C 1.52997 * 109.46890 * 68.52557 * 12 11 10 16 16 C 1.50707 * 109.47491 * 63.71774 * 15 12 11 17 17 H 1.08001 * 119.99153 * 5.07150 * 16 15 12 18 18 C 1.37872 * 120.00530 * 185.07247 * 16 15 12 19 19 N 1.31518 * 119.99711 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00311 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46976 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47191 * 119.99829 * 20 18 16 23 23 H 1.48496 * 109.47033 * 240.00064 * 20 18 16 24 24 C 1.46954 * 110.87991 * 59.31820 * 11 10 9 25 25 C 1.46954 * 111.00196 * 293.79795 * 8 7 6 26 26 C 1.38233 * 120.00140 * 0.27413 * 6 5 4 27 27 C 1.38233 * 120.00250 * 269.97919 * 3 2 1 28 28 H 1.08995 * 109.47070 * 299.99646 * 1 2 3 29 29 H 1.08997 * 109.47607 * 60.00383 * 1 2 3 30 30 H 1.09005 * 109.46862 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47122 * 240.00225 * 2 1 3 32 32 H 1.08992 * 109.47439 * 120.00316 * 2 1 3 33 33 H 1.07998 * 120.00337 * 359.97438 * 4 3 2 34 34 H 1.08001 * 119.99705 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.47463 * 330.00191 * 7 6 5 36 36 H 1.09005 * 109.47390 * 209.99729 * 7 6 5 37 37 H 1.09000 * 109.48632 * 63.22213 * 9 8 7 38 38 H 1.08996 * 109.50674 * 303.17000 * 9 8 7 39 39 H 1.09004 * 109.48915 * 181.63654 * 10 9 8 40 40 H 1.08994 * 109.50876 * 61.57652 * 10 9 8 41 41 H 1.09004 * 109.46751 * 179.97438 * 14 12 11 42 42 H 1.08990 * 109.47126 * 299.99642 * 14 12 11 43 43 H 1.09001 * 109.47533 * 60.00329 * 14 12 11 44 44 H 1.09000 * 109.47328 * 183.71523 * 15 12 11 45 45 H 1.08998 * 109.47581 * 303.71761 * 15 12 11 46 46 H 0.96997 * 120.00027 * 180.02562 * 19 18 16 47 47 H 1.09000 * 109.48779 * 60.64902 * 24 11 10 48 48 H 1.09004 * 109.48745 * 180.71000 * 24 11 10 49 49 H 1.08997 * 109.48595 * 296.78121 * 25 8 7 50 50 H 1.09004 * 109.48534 * 56.84534 * 25 8 7 51 51 H 1.08000 * 120.00254 * 179.73282 * 26 6 5 52 52 H 1.08007 * 119.99866 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2626 2.0725 1.1972 5 6 2.7238 3.3757 1.1972 6 6 2.9555 4.0268 0.0001 7 6 3.4578 5.4476 0.0001 8 7 4.9268 5.4477 0.0017 9 6 5.4537 6.7988 -0.2365 10 6 6.9816 6.7426 -0.3065 11 7 7.5069 6.1894 0.9496 12 6 8.9759 6.1894 0.9512 13 1 9.3382 5.6402 1.8202 14 6 9.4872 5.5191 -0.3255 15 6 9.4857 7.6307 1.0098 16 6 9.0586 8.2623 2.3098 17 1 8.5527 7.6695 3.0575 18 6 9.3135 9.5968 2.5445 19 7 9.9291 10.3188 1.6337 20 14 8.7834 10.3797 4.1555 21 1 8.1141 9.3614 5.0041 22 1 9.9760 10.9092 4.8645 23 1 7.8383 11.4911 3.8783 24 6 6.9800 4.8384 1.1878 25 6 5.4521 4.8945 1.2578 26 6 2.7205 3.3769 -1.1971 27 6 2.2631 2.0724 -1.1971 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.0822 1.5635 2.1325 34 1 2.9034 3.8849 2.1325 35 1 3.0935 5.9618 0.8895 36 1 3.0954 5.9612 -0.8905 37 1 5.1509 7.4561 0.5786 38 1 5.0604 7.1820 -1.1780 39 1 7.3760 7.7480 -0.4541 40 1 7.2847 6.1071 -1.1385 41 1 10.5772 5.5195 -0.3245 42 1 9.1240 4.4923 -0.3672 43 1 9.1249 6.0683 -1.1945 44 1 10.5738 7.6343 0.9445 45 1 9.0699 8.1974 0.1767 46 1 10.1088 11.2575 1.7990 47 1 7.2827 4.1811 0.3727 48 1 7.3733 4.4554 2.1294 49 1 5.1492 5.5302 2.0898 50 1 5.0576 3.8892 1.4054 51 1 2.8974 3.8871 -2.1324 52 1 2.0830 1.5633 -2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001654651184.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:32 Heat of formation + Delta-G solvation = 5.554038 kcal Electronic energy + Delta-G solvation = -26787.772574 eV Core-core repulsion = 23364.645452 eV Total energy + Delta-G solvation = -3423.127122 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.89509 -40.04102 -37.64249 -35.33214 -34.63130 -32.67318 -32.00119 -31.66272 -30.57318 -29.18591 -27.72331 -25.56172 -25.04818 -24.40258 -23.51431 -23.35460 -21.49962 -21.27204 -20.02005 -18.35434 -17.43549 -16.97957 -16.66324 -16.47468 -16.28461 -16.06759 -15.69618 -15.44752 -15.39044 -14.84461 -14.59253 -14.50819 -14.44007 -14.18348 -13.88406 -13.72239 -13.63430 -13.24554 -13.12749 -13.09252 -12.75761 -12.60794 -12.56632 -12.49771 -12.37978 -12.17688 -12.01931 -11.95903 -11.86255 -11.61837 -11.56163 -11.44423 -11.08251 -10.93791 -10.47930 -9.75273 -9.50903 -9.25103 -8.88499 -8.09464 -6.13548 0.43608 0.56343 1.39751 1.40806 1.53609 2.46924 2.71530 3.11014 3.20187 3.28069 3.79707 3.91843 3.97828 4.00274 4.10803 4.19512 4.20272 4.27919 4.39786 4.40692 4.43784 4.47027 4.53822 4.54783 4.59223 4.62851 4.66227 4.70409 4.78000 4.80791 4.87620 4.94858 4.98621 5.07742 5.09014 5.10279 5.11278 5.19797 5.22312 5.26866 5.31713 5.40620 5.49921 5.56327 5.69540 5.75830 5.78004 5.90056 6.03568 6.06385 6.18330 6.33763 6.45793 6.54396 6.99479 7.51509 9.02659 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.021769 B = 0.002629 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.916515 B =10647.815112 C =11051.509590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 C -0.089 4.089 4 C -0.127 4.127 5 C -0.120 4.120 6 C -0.088 4.088 7 C 0.095 3.905 8 N -0.532 5.532 9 C 0.066 3.934 10 C 0.065 3.935 11 N -0.531 5.531 12 C 0.095 3.905 13 H 0.063 0.937 14 C -0.171 4.171 15 C 0.037 3.963 16 C -0.493 4.493 17 H 0.054 0.946 18 C -0.005 4.005 19 N -0.939 5.939 20 Si 0.955 3.045 21 H -0.267 1.267 22 H -0.282 1.282 23 H -0.284 1.284 24 C 0.059 3.941 25 C 0.066 3.934 26 C -0.105 4.105 27 C -0.126 4.126 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.133 0.867 34 H 0.120 0.880 35 H 0.039 0.961 36 H 0.091 0.909 37 H 0.025 0.975 38 H 0.093 0.907 39 H 0.057 0.943 40 H 0.042 0.958 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.051 0.949 44 H -0.010 1.010 45 H -0.001 1.001 46 H 0.258 0.742 47 H 0.038 0.962 48 H 0.074 0.926 49 H 0.027 0.973 50 H 0.090 0.910 51 H 0.128 0.872 52 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.900 -19.941 -5.421 28.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 C -0.089 4.089 4 C -0.144 4.144 5 C -0.139 4.139 6 C -0.089 4.089 7 C -0.032 4.032 8 N -0.257 5.257 9 C -0.062 4.062 10 C -0.063 4.063 11 N -0.256 5.256 12 C -0.013 4.013 13 H 0.081 0.919 14 C -0.230 4.230 15 C 0.000 4.000 16 C -0.532 4.532 17 H 0.072 0.928 18 C -0.201 4.201 19 N -0.581 5.581 20 Si 0.781 3.219 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.210 1.210 24 C -0.069 4.069 25 C -0.062 4.062 26 C -0.124 4.124 27 C -0.144 4.144 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.151 0.849 34 H 0.138 0.862 35 H 0.057 0.943 36 H 0.110 0.890 37 H 0.044 0.956 38 H 0.111 0.889 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.009 0.991 45 H 0.017 0.983 46 H 0.067 0.933 47 H 0.056 0.944 48 H 0.092 0.908 49 H 0.045 0.955 50 H 0.108 0.892 51 H 0.146 0.854 52 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -18.847 -19.763 -5.434 27.844 hybrid contribution 0.280 1.142 0.807 1.426 sum -18.567 -18.621 -4.628 26.700 Atomic orbital electron populations 1.21727 0.94219 1.02333 1.01852 1.20579 0.96526 0.91551 1.03478 1.20167 0.98643 0.97123 0.93017 1.21191 1.00197 0.94667 0.98385 1.21180 0.99661 0.95436 0.97587 1.19734 0.99658 0.95755 0.93722 1.21041 0.86820 0.93461 1.01899 1.62228 1.07152 1.21691 1.34584 1.22091 0.94136 0.88989 1.00952 1.22016 0.94263 0.99292 0.90735 1.62177 1.07585 1.21269 1.34527 1.21602 0.86490 0.97028 0.96204 0.91890 1.22351 1.01516 1.00278 0.98811 1.19039 0.93686 0.91324 0.95984 1.21451 1.34885 0.94611 1.02250 0.92811 1.25823 0.96033 0.98283 0.99978 1.70096 1.44320 1.07751 1.35952 0.85541 0.77806 0.78268 0.80245 1.19159 1.20768 1.20987 1.22146 0.94625 0.89629 1.00538 1.22128 0.94071 1.00057 0.89957 1.21154 0.98403 0.95072 0.97728 1.21239 1.00110 0.94741 0.98321 0.93021 0.92868 0.91216 0.90362 0.90508 0.84945 0.86211 0.94299 0.89028 0.95618 0.88915 0.92470 0.94007 0.92384 0.91977 0.92995 0.99149 0.98262 0.93323 0.94400 0.90779 0.95474 0.89200 0.85434 0.84718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.89 71.98 0.71 -0.79 16 2 C -0.08 -1.00 6.06 29.85 0.18 -0.82 16 3 C -0.09 -1.49 5.13 -19.86 -0.10 -1.59 16 4 C -0.13 -2.25 9.70 22.27 0.22 -2.04 16 5 C -0.12 -2.42 7.92 22.27 0.18 -2.24 16 6 C -0.09 -1.87 4.89 -19.87 -0.10 -1.97 16 7 C 0.09 2.14 5.12 85.56 0.44 2.58 16 8 N -0.53 -14.41 4.70 -900.28 -4.23 -18.64 16 9 C 0.07 2.03 5.61 86.31 0.48 2.51 16 10 C 0.07 2.36 4.70 86.31 0.41 2.77 16 11 N -0.53 -20.57 4.32 -870.47 -3.76 -24.33 16 12 C 0.10 3.95 2.26 44.91 0.10 4.05 16 13 H 0.06 2.65 7.98 -2.39 -0.02 2.63 16 14 C -0.17 -5.92 8.39 71.98 0.60 -5.32 16 15 C 0.04 1.94 4.40 29.85 0.13 2.07 16 16 C -0.49 -28.32 8.80 25.60 0.23 -28.09 16 17 H 0.05 3.08 7.75 -2.91 -0.02 3.06 16 18 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 19 N -0.94 -57.92 13.29 21.45 0.28 -57.64 16 20 Si 0.96 46.01 29.54 68.60 2.03 48.04 16 21 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 23 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 24 C 0.06 1.87 5.36 86.31 0.46 2.33 16 25 C 0.07 1.86 5.25 86.31 0.45 2.32 16 26 C -0.11 -2.05 9.70 22.27 0.22 -1.84 16 27 C -0.13 -2.18 9.70 22.27 0.22 -1.97 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.08 0.82 8.09 -2.38 -0.02 0.80 16 32 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 33 H 0.13 1.89 8.06 -2.91 -0.02 1.87 16 34 H 0.12 2.31 7.99 -2.91 -0.02 2.29 16 35 H 0.04 0.90 8.06 -2.39 -0.02 0.88 16 36 H 0.09 1.84 7.97 -2.38 -0.02 1.83 16 37 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.09 2.42 8.07 -2.39 -0.02 2.41 16 39 H 0.06 2.43 6.37 -2.38 -0.02 2.41 16 40 H 0.04 1.44 6.40 -2.39 -0.02 1.42 16 41 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.06 1.88 6.85 -2.39 -0.02 1.87 16 43 H 0.05 1.81 6.39 -2.39 -0.02 1.80 16 44 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 45 H 0.00 -0.05 6.42 -2.39 -0.02 -0.07 16 46 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 47 H 0.04 1.17 6.85 -2.39 -0.02 1.15 16 48 H 0.07 2.29 8.05 -2.38 -0.02 2.27 16 49 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.09 2.27 5.95 -2.38 -0.01 2.26 16 51 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 52 H 0.13 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -65.27 398.27 0.46 -64.81 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.86 Total: 15.65 kcal Atomic # 6 Polarization: -33.18 SS G_CDS: 5.29 Total: -27.89 kcal Atomic # 7 Polarization: -92.90 SS G_CDS: -7.71 Total: -100.61 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -65.27 0.46 -64.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654651184.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.363 kcal (2) G-P(sol) polarization free energy of solvation -65.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds