Wall clock time and date at job start Tue Mar 31 2020 11:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31359 * 1 3 3 Si 1.86801 * 119.99928 * 2 1 4 4 H 1.48504 * 109.46932 * 269.99336 * 3 2 1 5 5 H 1.48494 * 109.47161 * 29.99701 * 3 2 1 6 6 H 1.48498 * 109.47289 * 149.99835 * 3 2 1 7 7 C 1.39048 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00162 * 0.02562 * 7 2 1 9 9 N 1.36871 * 119.99995 * 180.02562 * 7 2 1 10 10 C 1.34771 * 120.00248 * 180.02562 * 9 7 2 11 11 O 1.21597 * 120.00014 * 359.97438 * 10 9 7 12 12 C 1.47699 * 120.00323 * 180.02562 * 10 9 7 13 13 C 1.39667 * 120.14431 * 0.29080 * 12 10 9 14 14 C 1.37899 * 119.85421 * 180.27749 * 13 12 10 15 15 C 1.38454 * 120.14370 * 359.44864 * 14 13 12 16 16 I 2.09500 * 119.85646 * 180.28057 * 15 14 13 17 17 C 1.38455 * 120.29020 * 0.25979 * 15 14 13 18 18 C 1.37903 * 120.14815 * 0.02562 * 17 15 14 19 19 H 0.97005 * 120.00239 * 0.02562 * 1 2 3 20 20 H 0.97006 * 120.00246 * 359.97438 * 9 7 2 21 21 H 1.07998 * 120.07168 * 0.02562 * 13 12 10 22 22 H 1.08002 * 119.93175 * 179.73277 * 14 13 12 23 23 H 1.08006 * 119.92535 * 180.02562 * 17 15 14 24 24 H 1.07993 * 120.07365 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 2.4952 2.0463 -1.4001 5 1 1.4450 2.6527 0.6999 6 1 3.5451 1.4403 0.7001 7 6 2.0088 -1.2042 0.0005 8 1 1.4689 -2.1395 0.0005 9 7 3.3775 -1.2042 0.0011 10 6 4.0515 -2.3713 0.0011 11 8 3.4435 -3.4244 0.0011 12 6 5.5285 -2.3713 0.0022 13 6 6.2298 -1.1635 0.0094 14 6 7.6088 -1.1705 0.0047 15 6 8.2980 -2.3713 0.0043 16 53 10.3930 -2.3714 0.0059 17 6 7.6088 -3.5721 0.0032 18 6 6.2298 -3.5792 0.0021 19 1 -0.4851 0.8401 -0.0004 20 1 3.8626 -0.3641 0.0007 21 1 5.6934 -0.2262 0.0146 22 1 8.1524 -0.2373 0.0059 23 1 8.1524 -4.5054 0.0034 24 1 5.6934 -4.5165 0.0017 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001664324.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:16 Heat of formation + Delta-G solvation = 3.686074 kcal Electronic energy + Delta-G solvation = -12408.017107 eV Core-core repulsion = 9952.613846 eV Total energy + Delta-G solvation = -2455.403261 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 316.965 amu Computer time = 6.77 seconds Orbital eigenvalues (eV) -39.59145 -37.71635 -34.26375 -32.44648 -31.79403 -30.85118 -28.18623 -25.17838 -22.61496 -22.23619 -19.61971 -18.94895 -16.81764 -15.59236 -14.99514 -14.79614 -14.35937 -13.94307 -13.55023 -13.42353 -12.80543 -12.66742 -12.31424 -11.37627 -11.17206 -11.05449 -10.74337 -10.31159 -10.16119 -9.97777 -9.78238 -8.97857 -8.75335 -8.64560 -8.39324 -6.56368 -3.98710 0.89954 1.08645 1.41044 2.89113 2.93969 3.02592 3.32576 3.90619 4.23944 4.39943 4.83035 4.92641 5.12148 5.34874 5.45178 5.59122 5.71907 6.00652 6.26767 6.31836 6.56950 6.86606 7.33697 7.93849 8.36717 8.72058 9.18063 9.63959 10.54872 Molecular weight = 316.97amu Principal moments of inertia in cm(-1) A = 0.042029 B = 0.003802 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.050850 B = 7363.542863 C = 8019.750008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.045 3.955 3 Si 0.878 3.122 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.267 1.267 7 C -0.298 4.298 8 H 0.126 0.874 9 N -0.564 5.564 10 C 0.467 3.533 11 O -0.578 6.578 12 C -0.073 4.073 13 C -0.109 4.109 14 C -0.087 4.087 15 C -0.102 4.102 16 I -0.057 7.057 17 C -0.089 4.089 18 C -0.073 4.073 19 H 0.279 0.721 20 H 0.372 0.628 21 H 0.128 0.872 22 H 0.128 0.872 23 H 0.129 0.871 24 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.489 -0.634 -0.007 23.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.161 4.161 3 Si 0.703 3.297 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.192 1.192 7 C -0.427 4.427 8 H 0.143 0.857 9 N -0.200 5.200 10 C 0.256 3.744 11 O -0.463 6.463 12 C -0.077 4.077 13 C -0.130 4.130 14 C -0.108 4.108 15 C -0.244 4.244 16 I 0.092 6.908 17 C -0.110 4.110 18 C -0.094 4.094 19 H 0.090 0.910 20 H 0.207 0.793 21 H 0.146 0.854 22 H 0.146 0.854 23 H 0.147 0.853 24 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 24.266 -1.184 -0.005 24.295 hybrid contribution -0.681 1.463 0.019 1.614 sum 23.586 0.279 0.014 23.587 Atomic orbital electron populations 1.69593 1.05821 1.28241 1.46122 1.25145 0.95599 0.98347 0.97035 0.86687 0.80016 0.83608 0.79401 1.19031 1.19553 1.19208 1.19589 0.79185 0.97034 1.46901 0.85670 1.42246 1.07711 1.06488 1.63557 1.17528 0.85661 0.84648 0.86555 1.90651 1.68910 1.30592 1.56126 1.20514 0.95021 0.93576 0.98615 1.21372 0.93696 0.97879 1.00036 1.20912 0.94029 0.96684 0.99157 1.24177 0.94398 0.96169 1.09638 1.96731 0.95560 1.99653 1.98811 1.20995 0.94157 0.96598 0.99246 1.21275 0.92733 0.98552 0.96888 0.91025 0.79336 0.85426 0.85389 0.85286 0.84006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.93 13.95 55.50 0.77 -23.16 14 2 C 0.04 1.17 5.50 -17.45 -0.10 1.08 14 3 Si 0.88 18.39 27.74 -169.99 -4.71 13.67 14 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 14 5 H -0.27 -5.64 7.11 56.52 0.40 -5.24 14 6 H -0.27 -5.07 6.52 56.52 0.37 -4.71 14 7 C -0.30 -8.19 10.16 -15.00 -0.15 -8.34 14 8 H 0.13 3.91 7.38 -52.49 -0.39 3.52 14 9 N -0.56 -13.33 5.03 -11.88 -0.06 -13.39 14 10 C 0.47 10.88 7.72 -12.40 -0.10 10.78 14 11 O -0.58 -15.62 15.92 5.28 0.08 -15.53 14 12 C -0.07 -1.33 5.87 -104.96 -0.62 -1.95 14 13 C -0.11 -1.68 9.54 -39.17 -0.37 -2.05 14 14 C -0.09 -1.15 9.74 -39.63 -0.39 -1.54 14 15 C -0.10 -1.32 6.21 -39.42 -0.24 -1.57 14 16 I -0.06 -0.61 40.25 -73.02 -2.94 -3.55 14 17 C -0.09 -1.19 9.74 -39.62 -0.39 -1.58 14 18 C -0.07 -1.18 9.60 -39.17 -0.38 -1.56 14 19 H 0.28 7.10 8.31 -40.82 -0.34 6.76 14 20 H 0.37 7.68 3.79 -40.82 -0.15 7.53 14 21 H 0.13 1.83 6.40 -52.49 -0.34 1.50 14 22 H 0.13 1.41 8.06 -52.49 -0.42 0.99 14 23 H 0.13 1.44 8.06 -52.48 -0.42 1.02 14 24 H 0.14 2.31 7.65 -52.49 -0.40 1.91 14 LS Contribution 247.36 15.07 3.73 3.73 Total: -1.00 -29.55 247.36 -7.15 -36.70 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -1.29 Total: 8.25 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -2.73 Total: -6.72 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.71 Total: -36.55 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: 0.08 Total: -15.53 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -4.71 Total: 13.67 kcal Atomic # 53 Polarization: -0.61 SS G_CDS: -2.94 Total: -3.55 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.55 -7.15 -36.70 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001664324.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.388 kcal (2) G-P(sol) polarization free energy of solvation -29.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.77 seconds