Wall clock time and date at job start Tue Mar 31 2020 11:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31435 * 1 3 3 Si 1.86798 * 119.99864 * 2 1 4 4 H 1.48495 * 109.47290 * 239.99722 * 3 2 1 5 5 H 1.48498 * 109.47138 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47003 * 119.99866 * 3 2 1 7 7 C 1.38751 * 120.00305 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00666 * 180.02562 * 7 2 1 9 9 O 1.34929 * 119.99890 * 359.97438 * 7 2 1 10 10 C 1.34306 * 117.00049 * 180.02562 * 9 7 2 11 11 O 1.21215 * 120.00058 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00202 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.47485 * 179.97438 * 12 10 9 14 14 C 1.34779 * 120.00065 * 180.02562 * 13 12 10 15 15 O 1.21558 * 119.99743 * 359.97438 * 14 13 12 16 16 C 1.47786 * 119.99800 * 180.02562 * 14 13 12 17 17 C 1.39627 * 120.12836 * 359.97174 * 16 14 13 18 18 C 1.37879 * 119.89637 * 180.02562 * 17 16 14 19 19 C 1.38509 * 120.14232 * 0.02562 * 18 17 16 20 20 Cl 1.73603 * 119.86854 * 180.26972 * 19 18 17 21 21 C 1.38595 * 120.25521 * 359.97438 * 19 18 17 22 22 Cl 1.73603 * 119.94657 * 180.02562 * 21 19 18 23 23 C 1.38027 * 120.10549 * 0.02562 * 21 19 18 24 24 H 0.97006 * 120.00545 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47179 * 60.00120 * 12 10 9 26 26 H 1.09002 * 109.47482 * 300.00083 * 12 10 9 27 27 H 0.96994 * 119.99959 * 0.02562 * 13 12 10 28 28 H 1.08001 * 120.05345 * 0.02716 * 17 16 14 29 29 H 1.08002 * 119.92880 * 180.02562 * 18 17 16 30 30 H 1.08001 * 120.07615 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.1021 1.6964 -1.2124 5 1 1.2833 2.7464 0.0006 6 1 3.1020 1.6964 1.2125 7 6 2.0082 -1.2016 -0.0005 8 1 3.0882 -1.2016 -0.0001 9 8 1.3336 -2.3701 -0.0005 10 6 2.0651 -3.4965 -0.0005 11 8 3.2756 -3.4330 -0.0010 12 6 1.3810 -4.8392 -0.0011 13 7 2.3900 -5.9014 -0.0016 14 6 2.0079 -7.1939 -0.0027 15 8 0.8260 -7.4782 -0.0028 16 6 3.0257 -8.2654 -0.0026 17 6 4.3840 -7.9417 -0.0020 18 6 5.3296 -8.9452 -0.0025 19 6 4.9348 -10.2728 -0.0041 20 17 6.1314 -11.5306 0.0024 21 6 3.5883 -10.6010 -0.0047 22 17 3.1025 -12.2677 -0.0061 23 6 2.6329 -9.6048 -0.0043 24 1 -0.4851 0.8401 -0.0004 25 1 0.7586 -4.9295 -0.8914 26 1 0.7579 -4.9300 0.8886 27 1 3.3330 -5.6745 -0.0012 28 1 4.6934 -6.9070 -0.0012 29 1 6.3803 -8.6954 -0.0016 30 1 1.5837 -9.8611 -0.0051 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006102615.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:00 Heat of formation + Delta-G solvation = -101.608918 kcal Electronic energy + Delta-G solvation = -20287.046200 eV Core-core repulsion = 16520.664323 eV Total energy + Delta-G solvation = -3766.381876 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 317.005 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.56884 -39.33366 -38.62624 -36.95304 -36.82759 -35.72677 -34.25743 -32.30515 -31.57564 -31.37551 -28.17015 -25.33839 -24.02417 -23.28380 -20.85046 -20.37503 -18.75440 -17.92328 -17.17851 -16.59828 -16.19884 -15.73504 -15.71335 -15.30898 -14.79441 -14.51311 -14.43276 -14.34725 -14.21136 -13.54754 -12.91773 -12.65925 -12.33930 -12.29133 -12.19886 -11.71639 -11.71146 -11.45068 -11.30870 -11.26474 -10.57170 -10.55534 -10.19646 -9.97688 -9.47650 -9.33692 -9.27104 -9.05487 -8.71044 -6.53944 -4.23369 0.13987 0.61595 1.38095 1.73218 2.41040 2.87921 3.00174 3.12982 3.16965 3.30082 3.35423 3.84979 4.14233 4.35764 4.42617 4.53630 4.66312 4.74395 4.99761 5.25301 5.39075 5.53690 5.68593 5.70540 5.76410 5.99758 6.12775 6.55563 7.24890 7.42671 7.78551 8.06118 8.47420 8.93432 9.63091 10.62993 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.033452 B = 0.002327 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.815661 B =12029.553836 C =12851.223246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.045 3.955 3 Si 0.947 3.053 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.386 4.386 8 H 0.098 0.902 9 O -0.202 6.202 10 C 0.387 3.613 11 O -0.559 6.559 12 C 0.136 3.864 13 N -0.705 5.705 14 C 0.559 3.441 15 O -0.532 6.532 16 C -0.111 4.111 17 C -0.068 4.068 18 C -0.104 4.104 19 C -0.011 4.011 20 Cl -0.044 7.044 21 C -0.041 4.041 22 Cl -0.043 7.043 23 C -0.040 4.040 24 H 0.273 0.727 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.411 0.589 28 H 0.149 0.851 29 H 0.151 0.849 30 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.171 -20.307 -0.006 22.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.161 4.161 3 Si 0.771 3.229 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.462 4.462 8 H 0.116 0.884 9 O -0.108 6.108 10 C 0.234 3.766 11 O -0.458 6.458 12 C 0.011 3.989 13 N -0.360 5.360 14 C 0.345 3.655 15 O -0.410 6.410 16 C -0.114 4.114 17 C -0.087 4.087 18 C -0.122 4.122 19 C -0.039 4.039 20 Cl -0.015 7.015 21 C -0.069 4.069 22 Cl -0.014 7.014 23 C -0.060 4.060 24 H 0.083 0.917 25 H 0.121 0.879 26 H 0.121 0.879 27 H 0.250 0.750 28 H 0.166 0.834 29 H 0.169 0.831 30 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 8.476 -20.520 -0.004 22.202 hybrid contribution 0.949 0.677 0.000 1.165 sum 9.424 -19.844 -0.004 21.968 Atomic orbital electron populations 1.69980 1.06069 1.28181 1.45224 1.25388 0.95861 0.99010 0.95825 0.85690 0.78635 0.79125 0.79417 1.19371 1.20259 1.19378 1.21214 0.92438 0.79455 1.53125 0.88429 1.83849 1.39160 1.13240 1.74541 1.22858 0.86664 0.87338 0.79723 1.90533 1.15499 1.87651 1.52112 1.20464 0.90177 0.82841 1.05396 1.45652 1.11688 1.04678 1.74007 1.17909 0.88126 0.82171 0.77250 1.90813 1.17408 1.83010 1.49739 1.19980 0.93669 0.93487 1.04288 1.21546 0.91377 1.00556 0.95185 1.21025 1.01397 0.89367 1.00456 1.21042 0.88686 0.90885 1.03314 1.98406 1.55320 1.51329 1.96443 1.20631 0.91981 0.87410 1.06860 1.98403 1.91646 1.14565 1.96747 1.21140 1.00461 0.89770 0.94598 0.91726 0.87931 0.87926 0.74983 0.83366 0.83094 0.82433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.31 13.67 55.48 0.76 -23.55 16 2 C 0.04 1.20 5.49 -17.53 -0.10 1.11 16 3 Si 0.95 20.39 29.55 -169.99 -5.02 15.36 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.39 -10.87 9.65 30.92 0.30 -10.57 16 8 H 0.10 2.73 6.86 -52.49 -0.36 2.37 16 9 O -0.20 -5.48 9.75 -20.72 -0.20 -5.68 16 10 C 0.39 8.74 7.97 36.00 0.29 9.03 16 11 O -0.56 -13.28 14.90 -19.06 -0.28 -13.56 16 12 C 0.14 2.36 6.27 -5.20 -0.03 2.33 16 13 N -0.70 -10.45 5.48 -62.45 -0.34 -10.79 16 14 C 0.56 7.98 7.77 -12.35 -0.10 7.88 16 15 O -0.53 -9.09 16.35 5.31 0.09 -9.01 16 16 C -0.11 -1.25 5.87 -104.97 -0.62 -1.87 16 17 C -0.07 -0.62 9.54 -39.19 -0.37 -0.99 16 18 C -0.10 -0.84 9.81 -39.61 -0.39 -1.23 16 19 C -0.01 -0.10 6.33 -39.35 -0.25 -0.35 16 20 Cl -0.04 -0.38 27.94 -51.86 -1.45 -1.82 16 21 C -0.04 -0.41 6.32 -39.53 -0.25 -0.66 16 22 Cl -0.04 -0.40 27.94 -51.86 -1.45 -1.85 16 23 C -0.04 -0.43 9.37 -39.16 -0.37 -0.79 16 24 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 26 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 27 H 0.41 5.67 5.47 -40.82 -0.22 5.44 16 28 H 0.15 1.17 6.40 -52.49 -0.34 0.83 16 29 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 30 H 0.16 1.67 7.65 -52.49 -0.40 1.27 16 LS Contribution 310.31 15.07 4.68 4.68 Total: -1.00 -31.67 310.31 -6.83 -38.50 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -1.72 Total: 3.83 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -1.88 Total: 3.89 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.42 Total: -34.34 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.40 Total: -28.25 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -2.90 Total: -3.67 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.67 -6.83 -38.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006102615.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.108 kcal (2) G-P(sol) polarization free energy of solvation -31.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds