Wall clock time and date at job start Tue Mar 31 2020 10:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46906 * 111.00166 * 2 1 4 4 C 1.53004 * 109.46787 * 293.95851 * 3 2 1 5 5 H 1.09002 * 109.47615 * 54.99771 * 4 3 2 6 6 C 1.47204 * 109.47173 * 294.99610 * 4 3 2 7 7 N 3.66506 * 112.02408 * 284.54471 * 2 1 3 8 8 C 1.53002 * 109.46954 * 174.99629 * 4 3 2 9 9 C 1.50697 * 109.47071 * 184.99742 * 8 4 3 10 10 H 1.07998 * 120.00358 * 0.02562 * 9 8 4 11 11 C 1.37882 * 119.99648 * 179.72217 * 9 8 4 12 12 N 1.31510 * 120.00143 * 0.28326 * 11 9 8 13 13 Si 1.86804 * 119.99871 * 180.27687 * 11 9 8 14 14 H 1.48508 * 109.47090 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47236 * 119.99966 * 13 11 9 16 16 H 1.48494 * 109.47028 * 240.00385 * 13 11 9 17 17 C 1.46897 * 111.00418 * 123.95649 * 2 1 3 18 18 C 1.53000 * 109.47205 * 86.16128 * 17 2 1 19 19 C 1.53000 * 109.47018 * 305.50142 * 18 17 2 20 20 C 1.53000 * 109.47340 * 180.02562 * 19 18 17 21 21 C 1.53000 * 109.46857 * 59.99954 * 20 19 18 22 22 C 1.53000 * 109.47183 * 300.00142 * 21 20 19 23 23 C 1.53008 * 109.47075 * 300.00104 * 22 21 20 24 24 C 1.52995 * 109.46707 * 60.00031 * 23 22 21 25 25 C 1.52994 * 109.46965 * 300.00092 * 20 19 18 26 26 C 1.52994 * 109.47291 * 65.50237 * 18 17 2 27 27 C 1.52993 * 109.47207 * 59.99923 * 22 21 20 28 28 H 1.09001 * 109.47567 * 68.82854 * 1 2 3 29 29 H 1.09005 * 109.47025 * 188.83170 * 1 2 3 30 30 H 1.08997 * 109.46918 * 308.82592 * 1 2 3 31 31 H 1.08988 * 109.47380 * 173.95868 * 3 2 1 32 32 H 1.08999 * 109.46572 * 53.95300 * 3 2 1 33 33 H 1.09000 * 109.47147 * 64.99887 * 8 4 3 34 34 H 1.09007 * 109.47046 * 305.00088 * 8 4 3 35 35 H 0.97005 * 120.00031 * 180.02562 * 12 11 9 36 36 H 1.09004 * 109.46895 * 206.16036 * 17 2 1 37 37 H 1.08998 * 109.47179 * 326.15784 * 17 2 1 38 38 H 1.09008 * 109.47077 * 300.00091 * 19 18 17 39 39 H 1.09002 * 109.47131 * 59.99907 * 19 18 17 40 40 H 1.09000 * 109.47161 * 179.97438 * 20 19 18 41 41 H 1.09003 * 109.46760 * 180.02562 * 21 20 19 42 42 H 1.08994 * 109.47360 * 60.00427 * 21 20 19 43 43 H 1.09002 * 109.47131 * 180.02562 * 22 21 20 44 44 H 1.09003 * 109.47129 * 300.00297 * 23 22 21 45 45 H 1.08992 * 109.46951 * 180.02562 * 23 22 21 46 46 H 1.09008 * 109.46838 * 179.97438 * 24 23 22 47 47 H 1.09002 * 109.47338 * 300.00184 * 25 20 19 48 48 H 1.09003 * 109.47475 * 179.97438 * 25 20 19 49 49 H 1.09006 * 109.47112 * 299.99659 * 26 18 17 50 50 H 1.09000 * 109.47353 * 60.00101 * 26 18 17 51 51 H 1.09006 * 109.47328 * 179.97438 * 27 22 21 52 52 H 1.09008 * 109.46822 * 60.00187 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0575 -1.3183 5 1 0.5530 2.0059 -1.4691 6 6 2.3154 1.3778 -2.4304 7 7 2.8433 0.8533 -3.2887 8 6 2.0698 3.5225 -1.2689 9 6 1.6029 4.2288 -2.5155 10 1 1.0485 3.6872 -3.2676 11 6 1.8781 5.5682 -2.6930 12 7 2.5528 6.2279 -1.7770 13 14 1.2926 6.4457 -4.2347 14 1 0.5609 5.4876 -5.1020 15 1 0.3877 7.5607 -3.8563 16 1 2.4632 6.9864 -4.9712 17 6 1.9955 -0.7660 1.1375 18 6 2.0881 -2.2451 0.7572 19 6 0.7246 -2.7305 0.2611 20 6 0.8170 -4.2097 -0.1186 21 6 1.2339 -5.0256 1.1067 22 6 2.5974 -4.5402 1.6029 23 6 3.6366 -4.7182 0.4939 24 6 3.2196 -3.9023 -0.7313 25 6 1.8561 -4.3877 -1.2274 26 6 3.1270 -2.4225 -0.3518 27 6 2.5050 -3.0610 1.9825 28 1 -0.3634 0.3711 -0.9583 29 1 -0.3633 -1.0155 0.1578 30 1 -0.3633 0.6443 0.8006 31 1 3.0796 1.3445 0.1081 32 1 1.5611 1.9273 0.8309 33 1 3.1568 3.5746 -1.2073 34 1 1.6328 4.0032 -0.3935 35 1 2.7461 7.1703 -1.9017 36 1 2.9868 -0.3949 1.3977 37 1 1.3289 -0.6516 1.9923 38 1 -0.0156 -2.6041 1.0513 39 1 0.4274 -2.1489 -0.6115 40 1 -0.1545 -4.5556 -0.4716 41 1 1.3002 -6.0794 0.8361 42 1 0.4937 -4.8989 1.8967 43 1 2.8947 -5.1218 2.4755 44 1 3.7024 -5.7721 0.2234 45 1 4.6080 -4.3728 0.8475 46 1 3.9601 -4.0287 -1.5212 47 1 1.5591 -3.8063 -2.1003 48 1 1.9223 -5.4416 -1.4976 49 1 2.8298 -1.8409 -1.2245 50 1 4.0985 -2.0767 0.0016 51 1 3.4763 -2.7153 2.3363 52 1 1.7647 -2.9343 2.7725 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028922735.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:38 Heat of formation + Delta-G solvation = -3.495835 kcal Electronic energy + Delta-G solvation = -28008.906983 eV Core-core repulsion = 24585.387429 eV Total energy + Delta-G solvation = -3423.519554 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.61379 -38.05484 -35.81577 -33.81960 -32.96982 -32.69506 -32.62848 -31.19518 -27.68977 -26.91244 -25.94348 -25.70545 -24.26050 -21.89592 -21.62152 -21.47389 -21.21348 -19.93919 -17.57251 -16.67895 -16.46331 -15.28993 -15.14976 -14.99031 -14.59232 -14.48208 -14.43685 -14.34114 -13.97391 -13.47526 -13.35832 -13.20986 -12.95601 -12.71284 -12.51368 -12.35782 -12.32637 -12.07440 -11.88279 -11.73480 -11.52683 -11.36521 -11.18207 -11.04174 -10.93284 -10.87327 -10.79279 -10.71504 -10.65861 -10.51687 -10.47963 -10.14582 -9.75485 -9.64641 -9.61763 -9.44980 -9.16256 -8.45242 -8.08296 -6.08899 -4.11714 3.28741 3.37014 3.41735 3.78256 3.88475 4.06014 4.41480 4.41906 4.44995 4.48990 4.91271 4.95034 5.05217 5.14248 5.17142 5.18277 5.20600 5.28459 5.29199 5.29413 5.33629 5.43370 5.43886 5.58719 5.60310 5.63745 5.67314 5.68901 5.73745 5.85906 5.90703 5.91362 5.94057 5.95696 5.99256 6.04374 6.06879 6.09441 6.14068 6.18324 6.30550 6.39270 6.44003 6.46355 6.51125 6.55249 6.65428 7.25544 7.26648 7.44482 7.54983 7.86788 8.24728 8.63673 8.93420 9.53714 11.02058 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.026692 B = 0.002938 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.746318 B = 9526.389005 C = 9742.902374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 N -0.539 5.539 3 C 0.063 3.937 4 C 0.010 3.990 5 H 0.099 0.901 6 C 0.257 3.743 7 N -0.481 5.481 8 C 0.031 3.969 9 C -0.524 4.524 10 H 0.057 0.943 11 C 0.062 3.938 12 N -0.892 5.892 13 Si 0.890 3.110 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.284 1.284 17 C 0.063 3.937 18 C -0.042 4.042 19 C -0.107 4.107 20 C -0.087 4.087 21 C -0.106 4.106 22 C -0.083 4.083 23 C -0.107 4.107 24 C -0.087 4.087 25 C -0.106 4.106 26 C -0.094 4.094 27 C -0.103 4.103 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.026 0.974 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.025 0.975 34 H 0.036 0.964 35 H 0.262 0.738 36 H 0.069 0.931 37 H 0.038 0.962 38 H 0.055 0.945 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.064 0.936 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.065 0.935 47 H 0.062 0.938 48 H 0.055 0.945 49 H 0.078 0.922 50 H 0.053 0.947 51 H 0.060 0.940 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.055 -21.582 10.665 24.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 N -0.263 5.263 3 C -0.065 4.065 4 C -0.012 4.012 5 H 0.117 0.883 6 C -0.059 4.059 7 N -0.157 5.157 8 C -0.007 4.007 9 C -0.562 4.562 10 H 0.075 0.925 11 C -0.140 4.140 12 N -0.531 5.531 13 Si 0.718 3.282 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.210 1.210 17 C -0.065 4.065 18 C -0.043 4.043 19 C -0.144 4.144 20 C -0.105 4.105 21 C -0.144 4.144 22 C -0.102 4.102 23 C -0.144 4.144 24 C -0.106 4.106 25 C -0.143 4.143 26 C -0.131 4.131 27 C -0.141 4.141 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.045 0.955 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.044 0.956 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.073 0.927 49 H 0.096 0.904 50 H 0.072 0.928 51 H 0.079 0.921 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.035 -22.424 8.979 24.241 hybrid contribution -0.723 1.296 0.241 1.503 sum -2.758 -21.128 9.220 23.217 Atomic orbital electron populations 1.22947 0.87756 1.02465 1.01514 1.61916 1.07777 1.13891 1.42668 1.22299 1.00502 0.87255 0.96488 1.19225 0.99165 0.96634 0.86140 0.88339 1.28839 0.92693 0.90931 0.93472 1.80974 1.10669 1.12471 1.11634 1.19171 0.97655 0.85525 0.98398 1.21182 1.35866 0.94723 1.04458 0.92481 1.24955 0.94976 0.97589 0.96481 1.69948 1.39619 1.09469 1.34027 0.86549 0.78604 0.79670 0.83345 1.19660 1.20885 1.20969 1.22165 0.99742 0.93298 0.91292 1.20385 0.95644 0.93334 0.94913 1.21874 0.96237 0.94920 1.01337 1.21077 0.98200 0.95961 0.95285 1.21531 0.96538 0.98825 0.97490 1.21011 0.95387 0.96196 0.97587 1.21534 0.98049 0.99401 0.95435 1.21076 0.96811 0.95807 0.96888 1.21502 0.94797 1.00283 0.97734 1.21456 0.97771 0.94828 0.99048 1.21556 1.01065 0.94454 0.97014 0.91177 0.89972 0.95515 0.90478 0.93066 0.95646 0.94581 0.92882 0.91266 0.94367 0.92638 0.89793 0.91747 0.92492 0.92349 0.91764 0.92537 0.92253 0.91694 0.91887 0.92672 0.90372 0.92792 0.92132 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 8.15 60.06 0.49 0.50 16 2 N -0.54 -6.95 3.55 -242.92 -0.86 -7.81 16 3 C 0.06 0.94 4.25 -3.82 -0.02 0.92 16 4 C 0.01 0.19 2.13 -93.40 -0.20 -0.01 16 5 H 0.10 1.73 6.53 -51.93 -0.34 1.39 16 6 C 0.26 5.37 13.67 -20.76 -0.28 5.09 16 7 N -0.48 -10.84 18.54 42.15 0.78 -10.06 16 8 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 9 C -0.52 -14.01 8.60 -34.44 -0.30 -14.31 16 10 H 0.06 1.53 7.59 -52.49 -0.40 1.13 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -25.61 13.29 55.43 0.74 -24.87 16 13 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 14 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 C 0.06 0.70 4.25 -3.83 -0.02 0.68 16 18 C -0.04 -0.43 0.59 -154.51 -0.09 -0.52 16 19 C -0.11 -1.06 2.83 -26.73 -0.08 -1.14 16 20 C -0.09 -0.81 3.19 -90.62 -0.29 -1.10 16 21 C -0.11 -0.89 5.19 -26.73 -0.14 -1.03 16 22 C -0.08 -0.71 3.19 -90.62 -0.29 -1.00 16 23 C -0.11 -0.97 5.19 -26.73 -0.14 -1.11 16 24 C -0.09 -0.92 3.19 -90.60 -0.29 -1.21 16 25 C -0.11 -1.07 5.19 -26.73 -0.14 -1.21 16 26 C -0.09 -1.11 4.37 -26.71 -0.12 -1.22 16 27 C -0.10 -0.93 4.47 -26.74 -0.12 -1.05 16 28 H 0.07 0.87 6.80 -51.93 -0.35 0.52 16 29 H 0.08 0.83 4.08 -51.93 -0.21 0.62 16 30 H 0.03 0.30 8.01 -51.93 -0.42 -0.12 16 31 H 0.08 1.17 7.78 -51.94 -0.40 0.76 16 32 H 0.05 0.72 8.03 -51.93 -0.42 0.30 16 33 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.07 0.78 7.56 -51.93 -0.39 0.39 16 37 H 0.04 0.40 7.84 -51.93 -0.41 -0.01 16 38 H 0.06 0.52 7.53 -51.92 -0.39 0.13 16 39 H 0.08 0.96 5.74 -51.93 -0.30 0.66 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.71 8.14 -51.92 -0.42 0.28 16 47 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.08 1.15 7.77 -51.93 -0.40 0.74 16 50 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 51 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 52 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 LS Contribution 382.16 15.07 5.76 5.76 Total: -1.00 -29.03 382.16 -10.32 -39.35 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -9.49 Total: -3.24 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -2.23 Total: -15.49 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: 0.65 Total: -42.74 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.03 -10.32 -39.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028922735.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.854 kcal (2) G-P(sol) polarization free energy of solvation -29.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds