Wall clock time and date at job start Tue Mar 31 2020 10:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46906 * 111.00166 * 2 1 4 4 C 1.53004 * 109.46787 * 293.95851 * 3 2 1 5 5 H 1.09002 * 109.47615 * 54.99771 * 4 3 2 6 6 C 1.47204 * 109.47173 * 294.99610 * 4 3 2 7 7 N 3.66506 * 112.02408 * 284.54471 * 2 1 3 8 8 C 1.53002 * 109.46954 * 174.99629 * 4 3 2 9 9 C 1.50697 * 109.47071 * 184.99742 * 8 4 3 10 10 H 1.07998 * 120.00358 * 0.02562 * 9 8 4 11 11 C 1.37882 * 119.99648 * 179.72217 * 9 8 4 12 12 N 1.31510 * 120.00143 * 0.28326 * 11 9 8 13 13 Si 1.86804 * 119.99871 * 180.27687 * 11 9 8 14 14 H 1.48508 * 109.47090 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47236 * 119.99966 * 13 11 9 16 16 H 1.48494 * 109.47028 * 240.00385 * 13 11 9 17 17 C 1.46897 * 111.00418 * 123.95649 * 2 1 3 18 18 C 1.53000 * 109.47205 * 86.16128 * 17 2 1 19 19 C 1.53000 * 109.47018 * 305.50142 * 18 17 2 20 20 C 1.53000 * 109.47340 * 180.02562 * 19 18 17 21 21 C 1.53000 * 109.46857 * 59.99954 * 20 19 18 22 22 C 1.53000 * 109.47183 * 300.00142 * 21 20 19 23 23 C 1.53008 * 109.47075 * 300.00104 * 22 21 20 24 24 C 1.52995 * 109.46707 * 60.00031 * 23 22 21 25 25 C 1.52994 * 109.46965 * 300.00092 * 20 19 18 26 26 C 1.52994 * 109.47291 * 65.50237 * 18 17 2 27 27 C 1.52993 * 109.47207 * 59.99923 * 22 21 20 28 28 H 1.09001 * 109.47567 * 68.82854 * 1 2 3 29 29 H 1.09005 * 109.47025 * 188.83170 * 1 2 3 30 30 H 1.08997 * 109.46918 * 308.82592 * 1 2 3 31 31 H 1.08988 * 109.47380 * 173.95868 * 3 2 1 32 32 H 1.08999 * 109.46572 * 53.95300 * 3 2 1 33 33 H 1.09000 * 109.47147 * 64.99887 * 8 4 3 34 34 H 1.09007 * 109.47046 * 305.00088 * 8 4 3 35 35 H 0.97005 * 120.00031 * 180.02562 * 12 11 9 36 36 H 1.09004 * 109.46895 * 206.16036 * 17 2 1 37 37 H 1.08998 * 109.47179 * 326.15784 * 17 2 1 38 38 H 1.09008 * 109.47077 * 300.00091 * 19 18 17 39 39 H 1.09002 * 109.47131 * 59.99907 * 19 18 17 40 40 H 1.09000 * 109.47161 * 179.97438 * 20 19 18 41 41 H 1.09003 * 109.46760 * 180.02562 * 21 20 19 42 42 H 1.08994 * 109.47360 * 60.00427 * 21 20 19 43 43 H 1.09002 * 109.47131 * 180.02562 * 22 21 20 44 44 H 1.09003 * 109.47129 * 300.00297 * 23 22 21 45 45 H 1.08992 * 109.46951 * 180.02562 * 23 22 21 46 46 H 1.09008 * 109.46838 * 179.97438 * 24 23 22 47 47 H 1.09002 * 109.47338 * 300.00184 * 25 20 19 48 48 H 1.09003 * 109.47475 * 179.97438 * 25 20 19 49 49 H 1.09006 * 109.47112 * 299.99659 * 26 18 17 50 50 H 1.09000 * 109.47353 * 60.00101 * 26 18 17 51 51 H 1.09006 * 109.47328 * 179.97438 * 27 22 21 52 52 H 1.09008 * 109.46822 * 60.00187 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0575 -1.3183 5 1 0.5530 2.0059 -1.4691 6 6 2.3154 1.3778 -2.4304 7 7 2.8433 0.8533 -3.2887 8 6 2.0698 3.5225 -1.2689 9 6 1.6029 4.2288 -2.5155 10 1 1.0485 3.6872 -3.2676 11 6 1.8781 5.5682 -2.6930 12 7 2.5528 6.2279 -1.7770 13 14 1.2926 6.4457 -4.2347 14 1 0.5609 5.4876 -5.1020 15 1 0.3877 7.5607 -3.8563 16 1 2.4632 6.9864 -4.9712 17 6 1.9955 -0.7660 1.1375 18 6 2.0881 -2.2451 0.7572 19 6 0.7246 -2.7305 0.2611 20 6 0.8170 -4.2097 -0.1186 21 6 1.2339 -5.0256 1.1067 22 6 2.5974 -4.5402 1.6029 23 6 3.6366 -4.7182 0.4939 24 6 3.2196 -3.9023 -0.7313 25 6 1.8561 -4.3877 -1.2274 26 6 3.1270 -2.4225 -0.3518 27 6 2.5050 -3.0610 1.9825 28 1 -0.3634 0.3711 -0.9583 29 1 -0.3633 -1.0155 0.1578 30 1 -0.3633 0.6443 0.8006 31 1 3.0796 1.3445 0.1081 32 1 1.5611 1.9273 0.8309 33 1 3.1568 3.5746 -1.2073 34 1 1.6328 4.0032 -0.3935 35 1 2.7461 7.1703 -1.9017 36 1 2.9868 -0.3949 1.3977 37 1 1.3289 -0.6516 1.9923 38 1 -0.0156 -2.6041 1.0513 39 1 0.4274 -2.1489 -0.6115 40 1 -0.1545 -4.5556 -0.4716 41 1 1.3002 -6.0794 0.8361 42 1 0.4937 -4.8989 1.8967 43 1 2.8947 -5.1218 2.4755 44 1 3.7024 -5.7721 0.2234 45 1 4.6080 -4.3728 0.8475 46 1 3.9601 -4.0287 -1.5212 47 1 1.5591 -3.8063 -2.1003 48 1 1.9223 -5.4416 -1.4976 49 1 2.8298 -1.8409 -1.2245 50 1 4.0985 -2.0767 0.0016 51 1 3.4763 -2.7153 2.3363 52 1 1.7647 -2.9343 2.7725 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000028922735.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:37 Heat of formation + Delta-G solvation = -16.484470 kcal Electronic energy + Delta-G solvation = -28009.470213 eV Core-core repulsion = 24585.387429 eV Total energy + Delta-G solvation = -3424.082784 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.40557 -39.28025 -37.30037 -35.56173 -34.31079 -33.53085 -33.42017 -32.67711 -28.94014 -28.24548 -26.73095 -26.53239 -25.67252 -23.63602 -22.69781 -22.24299 -22.12911 -20.78909 -18.52529 -18.35379 -18.16108 -16.75160 -16.17208 -16.07438 -15.94656 -15.41767 -15.27823 -15.17873 -15.08286 -14.69818 -14.45894 -14.22395 -14.11727 -14.02008 -13.82767 -13.70399 -13.28457 -13.20223 -13.15248 -13.02168 -12.86233 -12.71250 -12.57658 -12.49975 -12.38176 -12.27845 -11.79518 -11.69268 -11.62443 -11.61353 -11.48858 -11.35809 -11.33731 -11.14476 -10.56666 -10.50484 -10.41934 -10.32666 -9.08103 -8.20345 -6.28533 1.38027 1.41064 1.51619 2.09046 2.16570 2.40675 3.02682 3.15099 3.37215 3.64527 3.68090 3.71595 4.07597 4.20395 4.27981 4.30332 4.39000 4.40381 4.42229 4.42640 4.50509 4.53302 4.55156 4.60647 4.69622 4.74900 4.79225 4.83920 4.84969 4.87159 4.93056 5.01134 5.01707 5.04896 5.16691 5.20445 5.21246 5.23496 5.27280 5.27580 5.31560 5.38474 5.44223 5.45746 5.60854 5.62562 5.65816 5.72195 5.78542 5.79509 6.13218 6.25258 6.30942 6.82954 6.95200 7.40049 8.90795 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.026692 B = 0.002938 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.746318 B = 9526.389005 C = 9742.902374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 N -0.550 5.550 3 C 0.074 3.926 4 C 0.022 3.978 5 H 0.113 0.887 6 C 0.267 3.733 7 N -0.513 5.513 8 C 0.039 3.961 9 C -0.538 4.538 10 H 0.052 0.948 11 C 0.011 3.989 12 N -0.923 5.923 13 Si 0.948 3.052 14 H -0.270 1.270 15 H -0.272 1.272 16 H -0.285 1.285 17 C 0.064 3.936 18 C -0.037 4.037 19 C -0.104 4.104 20 C -0.086 4.086 21 C -0.103 4.103 22 C -0.082 4.082 23 C -0.104 4.104 24 C -0.089 4.089 25 C -0.105 4.105 26 C -0.089 4.089 27 C -0.100 4.100 28 H 0.058 0.942 29 H 0.098 0.902 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.000 1.000 34 H 0.033 0.967 35 H 0.264 0.736 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.042 0.958 48 H 0.064 0.936 49 H 0.043 0.957 50 H 0.043 0.957 51 H 0.059 0.941 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.382 -23.025 12.111 26.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 N -0.273 5.273 3 C -0.055 4.055 4 C 0.000 4.000 5 H 0.131 0.869 6 C -0.049 4.049 7 N -0.191 5.191 8 C 0.000 4.000 9 C -0.576 4.576 10 H 0.071 0.929 11 C -0.187 4.187 12 N -0.563 5.563 13 Si 0.774 3.226 14 H -0.194 1.194 15 H -0.197 1.197 16 H -0.211 1.211 17 C -0.064 4.064 18 C -0.038 4.038 19 C -0.142 4.142 20 C -0.104 4.104 21 C -0.140 4.140 22 C -0.101 4.101 23 C -0.141 4.141 24 C -0.108 4.108 25 C -0.142 4.142 26 C -0.127 4.127 27 C -0.138 4.138 28 H 0.076 0.924 29 H 0.116 0.884 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.018 0.982 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.076 0.924 46 H 0.071 0.929 47 H 0.061 0.939 48 H 0.083 0.917 49 H 0.061 0.939 50 H 0.062 0.938 51 H 0.078 0.922 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.371 -23.879 10.428 26.274 hybrid contribution -0.280 1.734 -0.245 1.774 sum -3.651 -22.144 10.183 24.645 Atomic orbital electron populations 1.22985 0.86747 1.03696 1.01205 1.61846 1.08765 1.12595 1.44114 1.22101 1.00368 0.88522 0.94496 1.19170 0.99526 0.93989 0.87338 0.86895 1.29304 0.92013 0.90323 0.93265 1.80967 1.11764 1.13576 1.12784 1.18983 0.95832 0.88228 0.96959 1.21566 1.35427 0.95127 1.05453 0.92933 1.25713 0.95280 0.98554 0.99199 1.70038 1.40769 1.09842 1.35667 0.85644 0.78156 0.78779 0.80004 1.19413 1.19700 1.21099 1.22210 0.99747 0.93387 0.91015 1.20346 0.95346 0.93151 0.94969 1.21829 0.96147 0.95199 1.00982 1.21082 0.98137 0.95726 0.95497 1.21515 0.96519 0.98929 0.97037 1.21035 0.95298 0.95979 0.97746 1.21510 0.98290 0.99474 0.94829 1.21072 0.96937 0.95240 0.97507 1.21485 0.94839 1.00407 0.97508 1.21365 0.97770 0.95266 0.98320 1.21540 1.01384 0.94512 0.96367 0.92352 0.88358 0.94571 0.91115 0.91596 0.98203 0.94830 0.92701 0.91741 0.92759 0.91230 0.91577 0.91086 0.91732 0.91232 0.90234 0.91634 0.92396 0.92941 0.93906 0.91715 0.93852 0.93811 0.92225 0.91036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 8.15 127.69 1.04 1.06 16 2 N -0.55 -13.71 3.55 -922.46 -3.28 -16.99 16 3 C 0.07 2.16 4.25 86.30 0.37 2.53 16 4 C 0.02 0.80 2.13 -12.60 -0.03 0.77 16 5 H 0.11 3.89 6.53 -2.39 -0.02 3.88 16 6 C 0.27 11.32 13.67 89.44 1.22 12.54 16 7 N -0.51 -23.70 18.54 20.01 0.37 -23.33 16 8 C 0.04 1.82 4.42 29.85 0.13 1.95 16 9 C -0.54 -28.91 8.60 25.60 0.22 -28.69 16 10 H 0.05 2.82 7.59 -2.91 -0.02 2.79 16 11 C 0.01 0.63 5.46 84.66 0.46 1.09 16 12 N -0.92 -53.41 13.29 21.45 0.28 -53.13 16 13 Si 0.95 43.87 29.54 68.60 2.03 45.89 16 14 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 15 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 16 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 17 C 0.06 1.32 4.25 86.30 0.37 1.69 16 18 C -0.04 -0.72 0.59 -52.18 -0.03 -0.75 16 19 C -0.10 -1.89 2.83 30.59 0.09 -1.80 16 20 C -0.09 -1.43 3.19 -10.80 -0.03 -1.46 16 21 C -0.10 -1.39 5.19 30.59 0.16 -1.23 16 22 C -0.08 -1.17 3.19 -10.79 -0.03 -1.20 16 23 C -0.10 -1.71 5.19 30.60 0.16 -1.55 16 24 C -0.09 -1.86 3.19 -10.78 -0.03 -1.89 16 25 C -0.10 -2.06 5.19 30.59 0.16 -1.90 16 26 C -0.09 -2.15 4.37 30.61 0.13 -2.02 16 27 C -0.10 -1.55 4.47 30.59 0.14 -1.41 16 28 H 0.06 1.39 6.80 -2.39 -0.02 1.38 16 29 H 0.10 1.80 4.08 -2.38 -0.01 1.79 16 30 H 0.04 0.72 8.01 -2.39 -0.02 0.70 16 31 H 0.07 2.15 7.78 -2.39 -0.02 2.13 16 32 H 0.07 1.74 8.03 -2.39 -0.02 1.72 16 33 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 34 H 0.03 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.26 14.44 8.31 -92.70 -0.77 13.67 16 36 H 0.06 1.40 7.56 -2.38 -0.02 1.38 16 37 H 0.05 0.97 7.84 -2.39 -0.02 0.95 16 38 H 0.07 1.08 7.53 -2.38 -0.02 1.06 16 39 H 0.07 1.45 5.74 -2.39 -0.01 1.44 16 40 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.08 0.95 8.14 -2.39 -0.02 0.94 16 44 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 47 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.04 1.33 7.77 -2.38 -0.02 1.31 16 50 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 51 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 52 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 Total: -1.00 -62.42 382.16 4.76 -57.66 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 0.87 Total: 12.16 kcal Atomic # 6 Polarization: -26.76 SS G_CDS: 4.48 Total: -22.28 kcal Atomic # 7 Polarization: -90.82 SS G_CDS: -2.62 Total: -93.44 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -62.42 4.76 -57.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028922735.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.179 kcal (2) G-P(sol) polarization free energy of solvation -62.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds