Wall clock time and date at job start Tue Mar 31 2020 12:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99833 * 2 1 4 4 H 1.48491 * 109.47164 * 269.99949 * 3 2 1 5 5 H 1.48501 * 109.46904 * 29.99966 * 3 2 1 6 6 H 1.48500 * 109.46888 * 149.99592 * 3 2 1 7 7 C 1.37879 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99860 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00174 * 0.02562 * 7 2 1 10 10 S 1.81398 * 109.47067 * 180.02562 * 9 7 2 11 11 O 1.42098 * 108.58091 * 65.51472 * 10 9 7 12 12 O 1.42102 * 108.57873 * 294.48631 * 10 9 7 13 13 C 1.81403 * 101.91873 * 180.02562 * 10 9 7 14 14 C 1.50703 * 109.46886 * 180.02562 * 13 10 9 15 15 O 1.21286 * 119.99964 * 359.97438 * 14 13 10 16 16 N 1.34777 * 119.99896 * 180.02562 * 14 13 10 17 17 C 1.39971 * 120.00205 * 185.27244 * 16 14 13 18 18 C 1.38868 * 120.05909 * 213.58289 * 17 16 14 19 19 C 1.38105 * 119.94035 * 180.22597 * 18 17 16 20 20 C 1.38383 * 120.05645 * 359.48119 * 19 18 17 21 21 Cl 1.73606 * 119.94041 * 180.29397 * 20 19 18 22 22 C 1.38381 * 120.11918 * 0.26737 * 20 19 18 23 23 C 1.38111 * 120.05418 * 359.97438 * 22 20 19 24 24 H 0.96996 * 120.00043 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46783 * 59.99934 * 9 7 2 26 26 H 1.09001 * 109.46920 * 300.00444 * 9 7 2 27 27 H 1.08993 * 109.47342 * 60.00091 * 13 10 9 28 28 H 1.09001 * 109.46850 * 299.99748 * 13 10 9 29 29 H 0.97005 * 120.00136 * 5.26924 * 16 14 13 30 30 H 1.07999 * 120.02596 * 359.97438 * 18 17 16 31 31 H 1.08001 * 119.97035 * 179.74747 * 19 18 17 32 32 H 1.07999 * 119.97502 * 180.02562 * 22 20 19 33 33 H 1.08001 * 120.02252 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 16 2.4300 -3.8779 0.0021 11 8 3.1476 -3.8587 1.2284 12 8 3.1495 -3.8597 -1.2232 13 6 1.3245 -5.3161 0.0011 14 6 2.1449 -6.5803 0.0028 15 8 3.3561 -6.5171 0.0041 16 7 1.5326 -7.7809 0.0019 17 6 2.2898 -8.9528 0.1149 18 6 1.8837 -10.1090 -0.5383 19 6 2.6301 -11.2651 -0.4213 20 6 3.7874 -11.2690 0.3372 21 17 4.7275 -12.7220 0.4760 22 6 4.1972 -10.1169 0.9849 23 6 3.4517 -8.9594 0.8753 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 0.6967 -5.2912 -0.8896 28 1 0.6947 -5.2909 0.8904 29 1 0.5672 -7.8330 -0.0770 30 1 0.9828 -10.1051 -1.1339 31 1 2.3125 -12.1656 -0.9258 32 1 5.1010 -10.1225 1.5760 33 1 3.7721 -8.0603 1.3807 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031944597.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:07 Heat of formation + Delta-G solvation = -86.906802 kcal Electronic energy + Delta-G solvation = -21046.854900 eV Core-core repulsion = 17418.987356 eV Total energy + Delta-G solvation = -3627.867544 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.032 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -40.84937 -38.87644 -36.75949 -36.05007 -35.13710 -34.91233 -33.40175 -31.41247 -31.15516 -29.19278 -28.74729 -23.77507 -23.48834 -22.86102 -20.87632 -18.52683 -17.93179 -17.52842 -17.06248 -16.74835 -16.18282 -15.60508 -15.36881 -15.22734 -14.73781 -14.50749 -14.32302 -13.83649 -13.79174 -13.71364 -12.75815 -12.61044 -12.54647 -12.21424 -12.14396 -11.80871 -11.44030 -11.15127 -11.14203 -11.09774 -10.93013 -10.67515 -10.56654 -10.48848 -10.25037 -9.84845 -9.35705 -9.18669 -8.75517 -8.39462 -6.38668 -4.48031 0.71204 0.76822 0.98381 1.87047 2.23416 2.65394 3.20423 3.25816 3.32776 3.36088 3.66919 4.11965 4.24710 4.46607 4.53226 4.55923 4.78848 4.91865 4.97877 5.05314 5.13838 5.23448 5.33333 5.57062 5.66581 5.90627 5.95293 6.06426 6.53888 6.54117 6.58441 6.91911 7.43514 7.68698 7.70487 8.54111 9.19634 10.73202 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.047493 B = 0.002468 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.421059 B =11342.580413 C =11681.186654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.075 3.925 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.530 4.530 8 H 0.074 0.926 9 C -0.404 4.404 10 S 2.420 3.580 11 O -0.940 6.940 12 O -0.939 6.939 13 C -0.677 4.677 14 C 0.546 3.454 15 O -0.502 6.502 16 N -0.670 5.670 17 C 0.155 3.845 18 C -0.134 4.134 19 C -0.091 4.091 20 C -0.053 4.053 21 Cl -0.074 7.074 22 C -0.087 4.087 23 C -0.110 4.110 24 H 0.269 0.731 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.158 0.842 28 H 0.159 0.841 29 H 0.416 0.584 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.875 -21.569 0.514 21.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.131 4.131 3 Si 0.733 3.267 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.569 4.569 8 H 0.092 0.908 9 C -0.539 4.539 10 S 2.600 3.400 11 O -0.937 6.937 12 O -0.936 6.936 13 C -0.799 4.799 14 C 0.333 3.667 15 O -0.376 6.376 16 N -0.315 5.315 17 C 0.060 3.940 18 C -0.155 4.155 19 C -0.110 4.110 20 C -0.080 4.080 21 Cl -0.045 7.045 22 C -0.106 4.106 23 C -0.131 4.131 24 H 0.078 0.922 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.176 0.824 28 H 0.177 0.823 29 H 0.253 0.747 30 H 0.154 0.846 31 H 0.155 0.845 32 H 0.156 0.844 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.193 -21.570 0.544 21.577 hybrid contribution -1.225 0.532 -0.098 1.340 sum -1.419 -21.038 0.446 21.090 Atomic orbital electron populations 1.69934 1.06251 1.27817 1.47864 1.24930 0.95058 0.99623 0.93464 0.86329 0.80064 0.81536 0.78819 1.19858 1.20633 1.18975 1.20362 0.93104 0.88239 1.55159 0.90795 1.27595 1.09840 1.09642 1.06779 1.08674 0.78895 0.77040 0.75400 1.93476 1.68995 1.85313 1.45886 1.93481 1.68916 1.85293 1.45951 1.31241 1.19566 1.16038 1.13069 1.19666 0.87990 0.83997 0.75095 1.90879 1.13496 1.86643 1.46605 1.43488 1.10932 1.03937 1.73175 1.17860 0.93798 0.86163 0.96166 1.20845 1.02066 0.91859 1.00744 1.20809 0.93291 0.98589 0.98308 1.20909 0.95330 0.88547 1.03229 1.98366 1.72464 1.36550 1.97161 1.20980 1.00182 0.90546 0.98931 1.21263 0.94611 0.98987 0.98208 0.92159 0.89560 0.89554 0.82362 0.82286 0.74689 0.84562 0.84508 0.84362 0.83390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.05 13.29 55.43 0.74 -23.31 16 2 C 0.08 2.02 5.46 -17.82 -0.10 1.92 16 3 Si 0.91 20.68 29.54 -169.99 -5.02 15.66 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 7 C -0.53 -14.26 9.13 -34.44 -0.31 -14.58 16 8 H 0.07 2.00 7.71 -52.49 -0.40 1.59 16 9 C -0.40 -9.02 5.56 36.01 0.20 -8.82 16 10 S 2.42 49.06 3.88 -107.50 -0.42 48.65 16 11 O -0.94 -22.04 17.95 -59.53 -1.07 -23.10 16 12 O -0.94 -22.24 17.95 -59.53 -1.07 -23.30 16 13 C -0.68 -8.89 6.29 36.01 0.23 -8.67 16 14 C 0.55 8.03 7.59 -10.98 -0.08 7.95 16 15 O -0.50 -9.56 13.31 2.54 0.03 -9.53 16 16 N -0.67 -7.08 5.34 -9.85 -0.05 -7.13 16 17 C 0.15 1.73 6.28 -83.68 -0.53 1.21 16 18 C -0.13 -1.17 9.96 -39.40 -0.39 -1.56 16 19 C -0.09 -0.78 9.82 -39.58 -0.39 -1.17 16 20 C -0.05 -0.52 6.32 -39.48 -0.25 -0.77 16 21 Cl -0.07 -0.68 28.95 -51.86 -1.50 -2.18 16 22 C -0.09 -0.94 9.82 -39.58 -0.39 -1.33 16 23 C -0.11 -1.37 8.65 -39.40 -0.34 -1.72 16 24 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 25 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 26 H 0.09 1.83 8.14 -51.92 -0.42 1.41 16 27 H 0.16 1.50 8.14 -51.93 -0.42 1.08 16 28 H 0.16 1.51 8.14 -51.92 -0.42 1.09 16 29 H 0.42 2.68 8.82 -40.82 -0.36 2.32 16 30 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 31 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.15 2.08 6.42 -52.49 -0.34 1.75 16 LS Contribution 324.41 15.07 4.89 4.89 Total: -1.00 -36.15 324.41 -9.02 -45.17 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -3.20 Total: 1.73 kcal Atomic # 6 Polarization: -25.17 SS G_CDS: -2.35 Total: -27.53 kcal Atomic # 7 Polarization: -31.13 SS G_CDS: 0.68 Total: -30.44 kcal Atomic # 8 Polarization: -53.84 SS G_CDS: -2.10 Total: -55.94 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 16 Polarization: 49.06 SS G_CDS: -0.42 Total: 48.65 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -36.15 -9.02 -45.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031944597.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.737 kcal (2) G-P(sol) polarization free energy of solvation -36.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds