Wall clock time and date at job start Tue Mar 31 2020 12:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99833 * 2 1 4 4 H 1.48491 * 109.47164 * 269.99949 * 3 2 1 5 5 H 1.48501 * 109.46904 * 29.99966 * 3 2 1 6 6 H 1.48500 * 109.46888 * 149.99592 * 3 2 1 7 7 C 1.37879 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99860 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00174 * 0.02562 * 7 2 1 10 10 S 1.81398 * 109.47067 * 180.02562 * 9 7 2 11 11 O 1.42098 * 108.58091 * 65.51472 * 10 9 7 12 12 O 1.42102 * 108.57873 * 294.48631 * 10 9 7 13 13 C 1.81403 * 101.91873 * 180.02562 * 10 9 7 14 14 C 1.50703 * 109.46886 * 180.02562 * 13 10 9 15 15 O 1.21286 * 119.99964 * 359.97438 * 14 13 10 16 16 N 1.34777 * 119.99896 * 180.02562 * 14 13 10 17 17 C 1.39971 * 120.00205 * 185.27244 * 16 14 13 18 18 C 1.38868 * 120.05909 * 213.58289 * 17 16 14 19 19 C 1.38105 * 119.94035 * 180.22597 * 18 17 16 20 20 C 1.38383 * 120.05645 * 359.48119 * 19 18 17 21 21 Cl 1.73606 * 119.94041 * 180.29397 * 20 19 18 22 22 C 1.38381 * 120.11918 * 0.26737 * 20 19 18 23 23 C 1.38111 * 120.05418 * 359.97438 * 22 20 19 24 24 H 0.96996 * 120.00043 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46783 * 59.99934 * 9 7 2 26 26 H 1.09001 * 109.46920 * 300.00444 * 9 7 2 27 27 H 1.08993 * 109.47342 * 60.00091 * 13 10 9 28 28 H 1.09001 * 109.46850 * 299.99748 * 13 10 9 29 29 H 0.97005 * 120.00136 * 5.26924 * 16 14 13 30 30 H 1.07999 * 120.02596 * 359.97438 * 18 17 16 31 31 H 1.08001 * 119.97035 * 179.74747 * 19 18 17 32 32 H 1.07999 * 119.97502 * 180.02562 * 22 20 19 33 33 H 1.08001 * 120.02252 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 16 2.4300 -3.8779 0.0021 11 8 3.1476 -3.8587 1.2284 12 8 3.1495 -3.8597 -1.2232 13 6 1.3245 -5.3161 0.0011 14 6 2.1449 -6.5803 0.0028 15 8 3.3561 -6.5171 0.0041 16 7 1.5326 -7.7809 0.0019 17 6 2.2898 -8.9528 0.1149 18 6 1.8837 -10.1090 -0.5383 19 6 2.6301 -11.2651 -0.4213 20 6 3.7874 -11.2690 0.3372 21 17 4.7275 -12.7220 0.4760 22 6 4.1972 -10.1169 0.9849 23 6 3.4517 -8.9594 0.8753 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 0.6967 -5.2912 -0.8896 28 1 0.6947 -5.2909 0.8904 29 1 0.5672 -7.8330 -0.0770 30 1 0.9828 -10.1051 -1.1339 31 1 2.3125 -12.1656 -0.9258 32 1 5.1010 -10.1225 1.5760 33 1 3.7721 -8.0603 1.3807 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031944597.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:04 Heat of formation + Delta-G solvation = -114.396110 kcal Electronic energy + Delta-G solvation = -21048.046925 eV Core-core repulsion = 17418.987356 eV Total energy + Delta-G solvation = -3629.059570 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 317.032 amu Computer time = 2.84 seconds Orbital eigenvalues (eV) -41.83296 -39.78562 -37.78416 -37.53789 -36.80192 -35.93744 -35.37296 -32.27646 -32.13893 -31.00173 -29.73488 -25.59463 -24.41807 -23.72606 -21.87884 -19.81608 -19.27087 -18.78801 -18.55872 -17.78263 -17.35808 -17.19567 -16.82805 -16.51299 -16.12435 -15.83120 -15.42244 -14.95198 -14.57523 -14.55684 -14.44609 -14.00074 -13.73669 -13.41837 -13.37671 -13.00792 -12.92535 -12.85698 -12.71417 -12.57544 -12.53046 -11.98349 -11.90396 -11.75953 -11.58567 -11.22705 -10.93169 -10.75267 -10.11750 -9.22059 -8.40433 -6.54924 -0.84358 -0.08318 0.22814 1.11670 1.18533 1.39187 1.39618 1.51708 1.67543 2.16714 2.33102 2.58146 2.94057 2.96773 3.27799 3.39010 3.76228 3.85202 3.99614 4.17481 4.23697 4.28298 4.41583 4.78543 4.80561 4.81165 4.93772 5.12912 5.18925 5.22964 5.39350 5.72779 5.76916 6.06707 6.53572 6.77827 7.15207 8.71651 Molecular weight = 317.03amu Principal moments of inertia in cm(-1) A = 0.047493 B = 0.002468 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.421059 B =11342.580413 C =11681.186654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.030 3.970 3 Si 0.956 3.044 4 H -0.265 1.265 5 H -0.266 1.266 6 H -0.270 1.270 7 C -0.565 4.565 8 H 0.056 0.944 9 C -0.417 4.417 10 S 2.429 3.571 11 O -0.985 6.985 12 O -0.986 6.986 13 C -0.643 4.643 14 C 0.537 3.463 15 O -0.556 6.556 16 N -0.644 5.644 17 C 0.134 3.866 18 C -0.118 4.118 19 C -0.087 4.087 20 C -0.058 4.058 21 Cl -0.069 7.069 22 C -0.098 4.098 23 C -0.135 4.135 24 H 0.274 0.726 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.208 0.792 28 H 0.207 0.793 29 H 0.439 0.561 30 H 0.174 0.826 31 H 0.166 0.834 32 H 0.141 0.859 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.152 -23.552 -0.226 23.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.174 4.174 3 Si 0.779 3.221 4 H -0.190 1.190 5 H -0.191 1.191 6 H -0.194 1.194 7 C -0.603 4.603 8 H 0.074 0.926 9 C -0.550 4.550 10 S 2.616 3.384 11 O -0.983 6.983 12 O -0.983 6.983 13 C -0.772 4.772 14 C 0.324 3.676 15 O -0.434 6.434 16 N -0.291 5.291 17 C 0.040 3.960 18 C -0.138 4.138 19 C -0.106 4.106 20 C -0.085 4.085 21 Cl -0.040 7.040 22 C -0.117 4.117 23 C -0.155 4.155 24 H 0.083 0.917 25 H 0.115 0.885 26 H 0.114 0.886 27 H 0.225 0.775 28 H 0.224 0.776 29 H 0.280 0.720 30 H 0.192 0.808 31 H 0.183 0.817 32 H 0.159 0.841 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.481 -23.500 -0.196 23.632 hybrid contribution -0.564 0.923 0.139 1.090 sum -3.045 -22.577 -0.058 22.782 Atomic orbital electron populations 1.69968 1.07003 1.28817 1.48313 1.25678 0.95996 1.02560 0.93137 0.85574 0.78907 0.78383 0.79232 1.19019 1.19078 1.19428 1.20738 0.92938 0.91018 1.55641 0.92600 1.27614 1.10293 1.09597 1.07523 1.07632 0.78891 0.78215 0.73661 1.93421 1.70950 1.86757 1.47134 1.93424 1.70885 1.86756 1.47215 1.30759 1.17829 1.10626 1.18025 1.19871 0.87429 0.85427 0.74875 1.90887 1.15807 1.87367 1.49348 1.43181 1.11997 1.02489 1.71453 1.18052 0.93852 0.87051 0.97050 1.21199 1.02754 0.90381 0.99510 1.21201 0.92336 0.99677 0.97371 1.21066 0.95927 0.88360 1.03172 1.98370 1.72492 1.35968 1.97145 1.21033 1.00422 0.90718 0.99558 1.21190 0.96107 0.98623 0.99620 0.91659 0.88514 0.88561 0.77460 0.77600 0.71959 0.80845 0.81668 0.84088 0.86080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.07 13.29 21.45 0.28 -48.79 16 2 C 0.03 1.60 5.46 84.66 0.46 2.06 16 3 Si 0.96 42.54 29.54 68.60 2.03 44.57 16 4 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 7 C -0.56 -31.15 9.13 25.60 0.23 -30.91 16 8 H 0.06 3.17 7.71 -2.91 -0.02 3.15 16 9 C -0.42 -18.64 5.56 71.24 0.40 -18.25 16 10 S 2.43 99.14 3.88 -56.49 -0.22 98.92 16 11 O -0.99 -47.85 17.95 -125.75 -2.26 -50.11 16 12 O -0.99 -47.96 17.95 -125.75 -2.26 -50.22 16 13 C -0.64 -14.80 6.29 71.24 0.45 -14.35 16 14 C 0.54 14.80 7.59 87.66 0.67 15.46 16 15 O -0.56 -21.49 13.31 -0.17 0.00 -21.49 16 16 N -0.64 -11.60 5.34 -303.47 -1.62 -13.22 16 17 C 0.13 2.72 6.28 38.14 0.24 2.96 16 18 C -0.12 -1.60 9.96 22.39 0.22 -1.38 16 19 C -0.09 -1.21 9.82 22.27 0.22 -0.99 16 20 C -0.06 -1.05 6.32 22.34 0.14 -0.91 16 21 Cl -0.07 -1.15 28.95 -2.72 -0.08 -1.23 16 22 C -0.10 -2.11 9.82 22.27 0.22 -1.89 16 23 C -0.13 -3.38 8.65 22.39 0.19 -3.19 16 24 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 25 H 0.10 4.05 8.14 -2.39 -0.02 4.03 16 26 H 0.10 4.04 8.14 -2.39 -0.02 4.02 16 27 H 0.21 2.83 8.14 -2.39 -0.02 2.81 16 28 H 0.21 2.90 8.14 -2.39 -0.02 2.88 16 29 H 0.44 3.50 8.82 -92.70 -0.82 2.68 16 30 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 31 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 32 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 33 H 0.12 3.66 6.42 -2.91 -0.02 3.65 16 Total: -1.00 -83.67 324.41 -0.34 -84.01 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 0.34 Total: 8.95 kcal Atomic # 6 Polarization: -54.82 SS G_CDS: 3.44 Total: -51.38 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: -1.34 Total: -62.01 kcal Atomic # 8 Polarization: -117.30 SS G_CDS: -4.52 Total: -121.82 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: 99.14 SS G_CDS: -0.22 Total: 98.92 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.23 kcal Total: -83.67 -0.34 -84.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031944597.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.391 kcal (2) G-P(sol) polarization free energy of solvation -83.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.84 seconds