Wall clock time and date at job start Tue Mar 31 2020 12:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46894 * 111.00139 * 2 1 4 4 C 1.53001 * 109.47117 * 293.95188 * 3 2 1 5 5 C 1.53004 * 109.47298 * 179.97438 * 4 3 2 6 6 C 1.50693 * 109.47241 * 179.97438 * 5 4 3 7 7 H 1.08004 * 120.00184 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00169 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99770 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 120.00293 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46911 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46834 * 120.00493 * 10 8 6 13 13 H 1.48494 * 109.47268 * 240.00635 * 10 8 6 14 14 C 1.46900 * 110.99748 * 123.95374 * 2 1 3 15 15 C 1.50701 * 109.47030 * 66.04384 * 14 2 1 16 16 C 1.33362 * 122.53459 * 269.97438 * 15 14 2 17 17 S 1.75884 * 109.61129 * 180.02562 * 16 15 14 18 18 C 1.75878 * 90.98063 * 0.02562 * 17 16 15 19 19 Br 1.89098 * 125.21000 * 179.97438 * 18 17 16 20 20 C 1.33484 * 109.58389 * 359.97438 * 18 17 16 21 21 H 1.09001 * 109.47374 * 296.04866 * 1 2 3 22 22 H 1.08999 * 109.47082 * 56.04393 * 1 2 3 23 23 H 1.09000 * 109.47463 * 176.04566 * 1 2 3 24 24 H 1.09003 * 109.47328 * 53.95402 * 3 2 1 25 25 H 1.09002 * 109.47278 * 173.95349 * 3 2 1 26 26 H 1.08994 * 109.47290 * 300.00574 * 4 3 2 27 27 H 1.08999 * 109.47139 * 60.00411 * 4 3 2 28 28 H 1.08999 * 109.46808 * 300.00294 * 5 4 3 29 29 H 1.08999 * 109.46634 * 60.00170 * 5 4 3 30 30 H 0.97004 * 120.00220 * 179.97438 * 9 8 6 31 31 H 1.09002 * 109.46972 * 306.04399 * 14 2 1 32 32 H 1.08995 * 109.47342 * 186.04487 * 14 2 1 33 33 H 1.07994 * 125.19780 * 359.97438 * 16 15 14 34 34 H 1.07994 * 122.54898 * 179.72880 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 6 2.1793 3.4860 -1.3181 6 6 1.8214 4.1614 -2.6167 7 1 1.2591 3.6255 -3.3671 8 6 2.2109 5.4639 -2.8466 9 7 2.8952 6.1166 -1.9327 10 14 1.7679 6.3010 -4.4568 11 1 1.0015 5.3580 -5.3104 12 1 0.9394 7.5016 -4.1789 13 1 3.0100 6.7089 -5.1609 14 6 1.9954 -0.7660 1.1376 15 6 1.6368 -2.2204 0.9729 16 6 0.5071 -2.7397 1.4553 17 16 0.4350 -4.4548 1.0723 18 6 1.9898 -4.3685 0.2547 19 35 2.8673 -5.8232 -0.5757 20 6 2.4557 -3.1188 0.3101 21 1 -0.3634 0.4513 0.9233 22 1 -0.3633 0.5740 -0.8524 23 1 -0.3634 -1.0252 -0.0709 24 1 1.5611 1.9273 0.8309 25 1 3.0798 1.3443 0.1083 26 1 2.0658 1.5014 -2.1492 27 1 0.5473 2.0845 -1.4265 28 1 1.7446 4.0416 -0.4872 29 1 3.2636 3.4593 -1.2096 30 1 3.1696 7.0328 -2.0946 31 1 1.5610 -0.3872 2.0628 32 1 3.0796 -0.6612 1.1757 33 1 -0.2478 -2.1911 1.9988 34 1 3.4016 -2.8315 -0.1246 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042362265.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:59 Heat of formation + Delta-G solvation = 26.595160 kcal Electronic energy + Delta-G solvation = -15884.442348 eV Core-core repulsion = 13182.902027 eV Total energy + Delta-G solvation = -2701.540321 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.09635 -36.76884 -33.67166 -32.30605 -31.22274 -29.00338 -27.75143 -26.88693 -24.43407 -22.71539 -21.29942 -19.89034 -19.16441 -17.63680 -16.31956 -15.70439 -15.48237 -15.01063 -14.37936 -13.95807 -13.67382 -13.43994 -13.35640 -12.81427 -12.49233 -12.28505 -11.78199 -11.65321 -11.49561 -11.28735 -11.09113 -10.97646 -10.81411 -10.55392 -10.52494 -10.45736 -9.60643 -9.34200 -9.04284 -8.90374 -8.65868 -8.33192 -8.09226 -5.98421 -4.00220 0.54257 0.84032 1.51388 1.66463 2.34695 3.32329 3.39760 3.44434 4.27120 4.48998 4.74866 4.80067 5.16074 5.32871 5.37588 5.44379 5.50758 5.56789 5.64709 5.83895 5.94370 6.01201 6.12553 6.20655 6.31852 6.70596 6.76518 7.11739 7.30787 7.36213 7.70418 7.84987 8.02290 8.45856 9.07295 9.63849 11.13086 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.025044 B = 0.002441 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.782171 B =11467.133773 C =12069.657011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.537 5.537 3 C 0.056 3.944 4 C -0.105 4.105 5 C 0.022 3.978 6 C -0.517 4.517 7 H 0.055 0.945 8 C 0.055 3.945 9 N -0.897 5.897 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.109 3.891 15 C -0.085 4.085 16 C -0.195 4.195 17 S 0.141 5.859 18 C -0.209 4.209 19 Br 0.003 6.997 20 C -0.066 4.066 21 H 0.021 0.979 22 H 0.076 0.924 23 H 0.062 0.938 24 H 0.030 0.970 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.013 0.987 29 H 0.016 0.984 30 H 0.259 0.741 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.168 0.832 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.669 -25.994 8.771 27.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.261 5.261 3 C -0.071 4.071 4 C -0.143 4.143 5 C -0.016 4.016 6 C -0.555 4.555 7 H 0.074 0.926 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.021 4.021 15 C -0.098 4.098 16 C -0.332 4.332 17 S 0.404 5.596 18 C -0.405 4.405 19 Br 0.087 6.913 20 C -0.100 4.100 21 H 0.040 0.960 22 H 0.095 0.905 23 H 0.081 0.919 24 H 0.048 0.952 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.032 0.968 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.104 0.896 33 H 0.186 0.814 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.161 -27.782 8.347 29.180 hybrid contribution 0.307 2.419 -0.216 2.448 sum -2.854 -25.362 8.131 26.786 Atomic orbital electron populations 1.22478 0.87816 1.01601 1.00940 1.62048 1.07904 1.15050 1.41075 1.22331 0.99602 0.85812 0.99307 1.21659 1.00089 0.98150 0.94362 1.19077 0.96248 0.89303 0.96972 1.21293 1.34650 0.97550 1.02055 0.92630 1.25030 0.95258 0.97528 0.96730 1.69976 1.38505 1.11220 1.33945 0.86549 0.78178 0.79459 0.83913 1.19709 1.21077 1.21013 1.20796 1.00843 0.87788 0.92670 1.18788 0.94293 0.97073 0.99635 1.25718 1.02394 0.97284 1.07834 1.84261 1.15886 1.07032 1.52443 1.25975 1.03093 0.97893 1.13565 1.96706 1.76626 1.39179 1.78783 1.20135 1.01502 0.90091 0.98237 0.96030 0.90509 0.91916 0.95212 0.91121 0.92566 0.93418 0.96850 0.96600 0.93111 0.93856 0.89591 0.81417 0.83186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.01 60.07 0.54 0.81 16 2 N -0.54 -7.79 4.75 -244.37 -1.16 -8.95 16 3 C 0.06 0.95 4.96 -3.83 -0.02 0.94 16 4 C -0.10 -2.17 5.08 -26.73 -0.14 -2.30 16 5 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 6 C -0.52 -14.77 9.11 -34.44 -0.31 -15.09 16 7 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 10 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 C 0.11 1.29 5.23 -4.98 -0.03 1.26 16 15 C -0.08 -0.92 4.79 -106.25 -0.51 -1.43 16 16 C -0.19 -1.86 9.35 29.03 0.27 -1.59 16 17 S 0.14 1.30 23.34 -107.50 -2.51 -1.21 16 18 C -0.21 -2.20 6.97 29.07 0.20 -2.00 16 19 Br 0.00 0.03 34.07 -68.01 -2.32 -2.28 16 20 C -0.07 -0.72 9.91 -41.17 -0.41 -1.13 16 21 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 22 H 0.08 1.12 6.30 -51.93 -0.33 0.79 16 23 H 0.06 0.75 6.23 -51.93 -0.32 0.43 16 24 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 25 H 0.07 1.18 7.93 -51.93 -0.41 0.77 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.05 0.97 6.47 -51.93 -0.34 0.64 16 28 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.04 0.48 8.10 -51.93 -0.42 0.06 16 32 H 0.09 0.97 7.92 -51.93 -0.41 0.56 16 33 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 316.96 15.07 4.78 4.78 Total: -1.00 -29.97 316.96 -10.86 -40.83 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: -4.73 Total: -4.97 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -0.63 Total: -18.62 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: -0.43 Total: -35.31 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.51 Total: -1.21 kcal Atomic # 35 Polarization: 0.03 SS G_CDS: -2.32 Total: -2.28 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.97 -10.86 -40.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042362265.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.421 kcal (2) G-P(sol) polarization free energy of solvation -29.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds