Wall clock time and date at job start Tue Mar 31 2020 12:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46894 * 111.00139 * 2 1 4 4 C 1.53001 * 109.47117 * 293.95188 * 3 2 1 5 5 C 1.53004 * 109.47298 * 179.97438 * 4 3 2 6 6 C 1.50693 * 109.47241 * 179.97438 * 5 4 3 7 7 H 1.08004 * 120.00184 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00169 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99770 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 120.00293 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46911 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46834 * 120.00493 * 10 8 6 13 13 H 1.48494 * 109.47268 * 240.00635 * 10 8 6 14 14 C 1.46900 * 110.99748 * 123.95374 * 2 1 3 15 15 C 1.50701 * 109.47030 * 66.04384 * 14 2 1 16 16 C 1.33362 * 122.53459 * 269.97438 * 15 14 2 17 17 S 1.75884 * 109.61129 * 180.02562 * 16 15 14 18 18 C 1.75878 * 90.98063 * 0.02562 * 17 16 15 19 19 Br 1.89098 * 125.21000 * 179.97438 * 18 17 16 20 20 C 1.33484 * 109.58389 * 359.97438 * 18 17 16 21 21 H 1.09001 * 109.47374 * 296.04866 * 1 2 3 22 22 H 1.08999 * 109.47082 * 56.04393 * 1 2 3 23 23 H 1.09000 * 109.47463 * 176.04566 * 1 2 3 24 24 H 1.09003 * 109.47328 * 53.95402 * 3 2 1 25 25 H 1.09002 * 109.47278 * 173.95349 * 3 2 1 26 26 H 1.08994 * 109.47290 * 300.00574 * 4 3 2 27 27 H 1.08999 * 109.47139 * 60.00411 * 4 3 2 28 28 H 1.08999 * 109.46808 * 300.00294 * 5 4 3 29 29 H 1.08999 * 109.46634 * 60.00170 * 5 4 3 30 30 H 0.97004 * 120.00220 * 179.97438 * 9 8 6 31 31 H 1.09002 * 109.46972 * 306.04399 * 14 2 1 32 32 H 1.08995 * 109.47342 * 186.04487 * 14 2 1 33 33 H 1.07994 * 125.19780 * 359.97438 * 16 15 14 34 34 H 1.07994 * 122.54898 * 179.72880 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 6 2.1793 3.4860 -1.3181 6 6 1.8214 4.1614 -2.6167 7 1 1.2591 3.6255 -3.3671 8 6 2.2109 5.4639 -2.8466 9 7 2.8952 6.1166 -1.9327 10 14 1.7679 6.3010 -4.4568 11 1 1.0015 5.3580 -5.3104 12 1 0.9394 7.5016 -4.1789 13 1 3.0100 6.7089 -5.1609 14 6 1.9954 -0.7660 1.1376 15 6 1.6368 -2.2204 0.9729 16 6 0.5071 -2.7397 1.4553 17 16 0.4350 -4.4548 1.0723 18 6 1.9898 -4.3685 0.2547 19 35 2.8673 -5.8232 -0.5757 20 6 2.4557 -3.1188 0.3101 21 1 -0.3634 0.4513 0.9233 22 1 -0.3633 0.5740 -0.8524 23 1 -0.3634 -1.0252 -0.0709 24 1 1.5611 1.9273 0.8309 25 1 3.0798 1.3443 0.1083 26 1 2.0658 1.5014 -2.1492 27 1 0.5473 2.0845 -1.4265 28 1 1.7446 4.0416 -0.4872 29 1 3.2636 3.4593 -1.2096 30 1 3.1696 7.0328 -2.0946 31 1 1.5610 -0.3872 2.0628 32 1 3.0796 -0.6612 1.1757 33 1 -0.2478 -2.1911 1.9988 34 1 3.4016 -2.8315 -0.1246 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042362265.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:55 Heat of formation + Delta-G solvation = 9.813780 kcal Electronic energy + Delta-G solvation = -15885.170043 eV Core-core repulsion = 13182.902027 eV Total energy + Delta-G solvation = -2702.268016 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.00938 -37.91499 -35.59056 -33.54162 -32.68020 -29.97386 -28.70452 -28.50999 -25.92970 -23.97410 -22.61401 -21.47761 -19.97286 -18.51240 -18.37543 -16.79489 -16.65583 -16.37731 -16.10809 -15.24045 -14.90076 -14.37031 -14.23645 -14.15137 -13.73965 -13.58601 -13.34729 -13.12852 -12.71471 -12.66876 -12.49386 -12.37052 -12.20361 -11.89938 -11.79906 -11.39817 -11.33239 -11.30108 -11.06444 -10.54198 -9.68069 -9.45849 -9.18591 -8.19417 -6.29947 -0.23424 0.08829 0.74556 0.90773 1.40362 1.40777 1.51552 1.54370 2.41734 3.13818 3.16526 3.88703 4.04145 4.18142 4.29013 4.36277 4.51607 4.54501 4.68332 4.74676 4.77293 4.79806 4.97932 5.07556 5.12014 5.18932 5.28009 5.39264 5.54257 5.76997 5.88037 6.09583 6.17971 6.29623 6.87242 7.39248 8.92624 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.025044 B = 0.002441 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.782171 B =11467.133773 C =12069.657011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.546 5.546 3 C 0.069 3.931 4 C -0.090 4.090 5 C 0.026 3.974 6 C -0.541 4.541 7 H 0.057 0.943 8 C -0.001 4.001 9 N -0.933 5.933 10 Si 0.964 3.036 11 H -0.263 1.263 12 H -0.277 1.277 13 H -0.278 1.278 14 C 0.112 3.888 15 C -0.099 4.099 16 C -0.188 4.188 17 S 0.170 5.830 18 C -0.225 4.225 19 Br 0.007 6.993 20 C -0.076 4.076 21 H 0.032 0.968 22 H 0.060 0.940 23 H 0.078 0.922 24 H 0.029 0.971 25 H 0.070 0.930 26 H 0.048 0.952 27 H 0.049 0.951 28 H -0.009 1.009 29 H -0.008 1.008 30 H 0.263 0.737 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.188 0.812 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.729 -26.940 8.647 28.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.270 5.270 3 C -0.059 4.059 4 C -0.128 4.128 5 C -0.012 4.012 6 C -0.579 4.579 7 H 0.076 0.924 8 C -0.198 4.198 9 N -0.574 5.574 10 Si 0.788 3.212 11 H -0.187 1.187 12 H -0.203 1.203 13 H -0.203 1.203 14 C -0.018 4.018 15 C -0.113 4.113 16 C -0.326 4.326 17 S 0.433 5.567 18 C -0.421 4.421 19 Br 0.090 6.910 20 C -0.110 4.110 21 H 0.050 0.950 22 H 0.079 0.921 23 H 0.097 0.903 24 H 0.047 0.953 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.010 0.990 29 H 0.011 0.989 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.205 0.795 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.228 -28.753 8.228 30.205 hybrid contribution 0.627 2.649 -0.134 2.725 sum -3.601 -26.104 8.094 27.566 Atomic orbital electron populations 1.22477 0.87044 1.02417 1.00738 1.61955 1.08702 1.13361 1.42983 1.22027 0.99723 0.87248 0.96880 1.21399 0.99740 0.95212 0.96416 1.18971 0.94728 0.92173 0.95293 1.21725 1.34840 0.98278 1.03101 0.92450 1.25969 0.94990 0.98307 1.00575 1.70097 1.39434 1.11736 1.36111 0.85416 0.78150 0.78355 0.79241 1.18702 1.20289 1.20334 1.20789 1.00981 0.88020 0.91973 1.18684 0.95103 0.96475 1.00990 1.25989 1.02102 0.97702 1.06777 1.84186 1.14634 1.06445 1.51416 1.26138 1.03977 0.97992 1.13989 1.96703 1.76730 1.38762 1.78771 1.20197 1.01721 0.90472 0.98630 0.94997 0.92131 0.90322 0.95254 0.91120 0.93274 0.93191 0.99024 0.98915 0.92776 0.92671 0.89448 0.79503 0.83441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 9.01 127.69 1.15 1.68 16 2 N -0.55 -15.15 4.75 -927.05 -4.41 -19.56 16 3 C 0.07 2.31 4.96 86.30 0.43 2.73 16 4 C -0.09 -3.74 5.08 30.60 0.16 -3.58 16 5 C 0.03 1.38 4.97 29.85 0.15 1.53 16 6 C -0.54 -31.30 9.11 25.60 0.23 -31.06 16 7 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 8 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 9 N -0.93 -57.13 13.29 21.45 0.28 -56.85 16 10 Si 0.96 44.68 29.54 68.60 2.03 46.71 16 11 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 12 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 13 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 14 C 0.11 2.46 5.23 85.56 0.45 2.90 16 15 C -0.10 -1.98 4.79 -20.92 -0.10 -2.08 16 16 C -0.19 -3.11 9.35 66.72 0.62 -2.49 16 17 S 0.17 2.77 23.34 -56.49 -1.32 1.45 16 18 C -0.22 -4.41 6.97 66.74 0.47 -3.95 16 19 Br 0.01 0.12 34.07 -20.37 -0.69 -0.57 16 20 C -0.08 -1.59 9.91 21.24 0.21 -1.38 16 21 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 22 H 0.06 1.70 6.30 -2.39 -0.02 1.68 16 23 H 0.08 1.70 6.23 -2.39 -0.01 1.68 16 24 H 0.03 0.98 8.12 -2.39 -0.02 0.96 16 25 H 0.07 2.35 7.93 -2.39 -0.02 2.33 16 26 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.05 2.04 6.47 -2.39 -0.02 2.02 16 28 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 29 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 30 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 31 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 32 H 0.09 1.87 7.92 -2.39 -0.02 1.86 16 33 H 0.19 2.31 8.06 -2.91 -0.02 2.29 16 34 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -63.64 316.96 1.20 -62.44 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: 1.08 Total: 1.67 kcal Atomic # 6 Polarization: -39.51 SS G_CDS: 4.22 Total: -35.29 kcal Atomic # 7 Polarization: -72.28 SS G_CDS: -4.12 Total: -76.41 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -1.32 Total: 1.45 kcal Atomic # 35 Polarization: 0.12 SS G_CDS: -0.69 Total: -0.57 kcal Total: -63.64 1.20 -62.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042362265.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.254 kcal (2) G-P(sol) polarization free energy of solvation -63.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds