Wall clock time and date at job start Tue Mar 31 2020 12:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47562 * 2 1 4 4 N 1.46897 * 109.47072 * 120.00020 * 2 1 3 5 5 C 1.46899 * 111.00012 * 169.65995 * 4 2 1 6 6 C 1.50705 * 109.47403 * 293.95684 * 5 4 2 7 7 H 1.08006 * 119.99535 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00208 * 180.02562 * 6 5 4 9 9 N 1.31510 * 119.99848 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 119.99839 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47465 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47374 * 120.00011 * 10 8 6 13 13 H 1.48508 * 109.47186 * 239.99868 * 10 8 6 14 14 C 1.46896 * 111.00166 * 293.61658 * 4 2 1 15 15 C 1.50702 * 109.47220 * 163.69246 * 14 4 2 16 16 C 1.33358 * 125.19566 * 94.57506 * 15 14 4 17 17 C 1.38452 * 114.92766 * 179.83447 * 16 15 14 18 18 C 1.33472 * 114.89501 * 0.45282 * 17 16 15 19 19 Br 1.89100 * 125.20960 * 179.75697 * 18 17 16 20 20 S 1.75880 * 125.19038 * 274.87996 * 15 14 4 21 21 H 1.09002 * 109.47078 * 306.50521 * 1 2 3 22 22 H 1.09001 * 109.47380 * 66.49977 * 1 2 3 23 23 H 1.08996 * 109.47501 * 186.49998 * 1 2 3 24 24 H 1.09004 * 109.47046 * 240.00079 * 2 1 3 25 25 H 1.08998 * 109.47446 * 179.97438 * 3 2 1 26 26 H 1.09008 * 109.47274 * 300.00196 * 3 2 1 27 27 H 1.09000 * 109.47198 * 59.99593 * 3 2 1 28 28 H 1.08997 * 109.47159 * 53.95633 * 5 4 2 29 29 H 1.09005 * 109.46959 * 173.95415 * 5 4 2 30 30 H 0.97002 * 119.99731 * 179.97438 * 9 8 6 31 31 H 1.09003 * 109.47122 * 283.69136 * 14 4 2 32 32 H 1.08998 * 109.47178 * 43.68739 * 14 4 2 33 33 H 1.08005 * 122.53361 * 0.02562 * 16 15 14 34 34 H 1.07999 * 122.55155 * 180.24151 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 3.4671 -0.9290 1.1167 6 6 3.7546 -1.8992 0.0000 7 1 2.9431 -2.3004 -0.5891 8 6 5.0535 -2.2756 -0.2690 9 7 6.0415 -1.7874 0.4487 10 14 5.4097 -3.4787 -1.6527 11 1 4.1354 -3.8775 -2.3024 12 1 6.2957 -2.8330 -2.6544 13 1 6.0814 -4.6829 -1.1010 14 6 1.6771 0.0559 2.4161 15 6 1.8243 -0.8427 3.6169 16 6 2.9117 -0.9286 4.3840 17 6 2.8142 -1.8227 5.4366 18 6 1.6498 -2.4700 5.5179 19 35 1.2066 -3.7558 6.8317 20 16 0.5908 -1.9441 4.2159 21 1 -0.3633 0.6114 0.8261 22 1 -0.3634 0.4098 -0.9424 23 1 -0.3634 -1.0210 0.1163 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 3.9785 0.0132 0.9200 29 1 3.8217 -1.3449 2.0598 30 1 6.9552 -2.0525 0.2597 31 1 2.3463 0.9104 2.5176 32 1 0.6474 0.4070 2.3490 33 1 3.8001 -0.3425 4.2001 34 1 3.6203 -1.9866 6.1365 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530713.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:13 Heat of formation + Delta-G solvation = 33.420616 kcal Electronic energy + Delta-G solvation = -16856.904384 eV Core-core repulsion = 14155.660037 eV Total energy + Delta-G solvation = -2701.244347 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.41399 -37.01873 -32.80070 -32.28468 -30.88811 -29.14672 -26.82222 -26.55706 -24.56994 -22.67175 -22.08805 -19.21243 -18.66678 -16.89785 -16.18246 -15.42728 -14.95381 -14.76044 -14.12375 -13.60365 -13.27920 -12.86503 -12.79990 -12.59567 -12.20029 -12.13534 -11.82806 -11.47319 -11.29876 -10.98352 -10.76384 -10.69750 -10.66734 -10.52478 -10.45683 -10.17451 -10.04570 -9.78074 -9.16487 -8.44092 -8.26444 -8.17028 -7.28543 -6.03184 -4.03188 1.06439 1.30625 2.02548 2.22515 2.94449 3.30425 3.38403 3.42832 4.42701 4.86091 5.24895 5.33703 5.42832 5.51379 5.63395 5.70012 5.79623 5.92092 5.97337 6.00972 6.21252 6.23035 6.26388 6.46949 6.49092 6.67108 6.73008 6.83083 7.30454 7.37292 7.78654 8.08150 8.17664 8.51759 9.03893 9.60554 11.07757 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.014598 B = 0.004543 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.564329 B = 6162.252265 C = 7341.772340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.081 3.919 3 C -0.182 4.182 4 N -0.524 5.524 5 C 0.187 3.813 6 C -0.504 4.504 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.898 5.898 10 Si 0.894 3.106 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.113 3.887 15 C -0.121 4.121 16 C -0.142 4.142 17 C -0.079 4.079 18 C -0.222 4.222 19 Br -0.010 7.010 20 S 0.159 5.841 21 H 0.044 0.956 22 H 0.050 0.950 23 H 0.060 0.940 24 H 0.096 0.904 25 H 0.063 0.937 26 H 0.049 0.951 27 H 0.045 0.955 28 H -0.005 1.005 29 H 0.037 0.963 30 H 0.260 0.740 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.146 0.854 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.836 1.849 10.894 15.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.027 4.027 3 C -0.241 4.241 4 N -0.249 5.249 5 C 0.062 3.938 6 C -0.542 4.542 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.722 3.278 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.017 4.017 15 C -0.240 4.240 16 C -0.173 4.173 17 C -0.113 4.113 18 C -0.418 4.418 19 Br 0.073 6.927 20 S 0.422 5.578 21 H 0.063 0.937 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.114 0.886 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.013 0.987 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.163 0.837 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.526 0.521 10.967 16.657 hybrid contribution 2.489 0.651 -0.585 2.638 sum -10.037 1.172 10.383 14.489 Atomic orbital electron populations 1.21898 0.96122 1.01779 1.00286 1.21612 0.93664 0.92082 0.95381 1.22453 1.02567 0.98405 1.00641 1.62381 1.19732 1.44054 0.98704 1.19846 0.79997 0.95652 0.98264 1.21165 0.92122 1.25487 1.15454 0.91936 1.24946 0.96259 0.96578 0.96700 1.69956 0.99381 1.44403 1.40003 0.86505 0.78292 0.81013 0.82008 1.19674 1.21171 1.21067 1.20603 1.00810 0.92474 0.87803 1.24699 0.97011 1.01657 1.00680 1.20066 0.99347 1.01980 0.95887 1.20125 0.96246 0.95848 0.99088 1.25895 1.03085 1.08261 1.04605 1.96606 1.93428 1.52731 1.49940 1.84104 1.16569 1.36951 1.20147 0.93696 0.93084 0.92101 0.88597 0.91778 0.93141 0.93571 0.98686 0.94531 0.93065 0.93191 0.90572 0.83677 0.84023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.01 37.16 0.33 -1.76 16 2 C 0.08 1.46 2.78 -67.72 -0.19 1.27 16 3 C -0.18 -2.97 8.50 37.16 0.32 -2.66 16 4 N -0.52 -10.56 4.39 -229.52 -1.01 -11.56 16 5 C 0.19 4.61 4.45 -4.97 -0.02 4.59 16 6 C -0.50 -13.74 8.36 -34.44 -0.29 -14.03 16 7 H 0.06 1.71 7.18 -52.48 -0.38 1.33 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.16 13.29 55.43 0.74 -25.42 16 10 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 14 C 0.11 1.92 4.18 -4.98 -0.02 1.90 16 15 C -0.12 -2.05 5.52 -36.01 -0.20 -2.25 16 16 C -0.14 -2.38 8.83 -41.21 -0.36 -2.75 16 17 C -0.08 -1.21 10.11 -41.17 -0.42 -1.63 16 18 C -0.22 -3.38 6.97 29.07 0.20 -3.17 16 19 Br -0.01 -0.14 34.07 -68.01 -2.32 -2.45 16 20 S 0.16 2.46 23.33 -107.50 -2.51 -0.05 16 21 H 0.04 0.60 6.57 -51.93 -0.34 0.26 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.10 1.96 6.64 -51.93 -0.34 1.61 16 25 H 0.06 1.20 6.59 -51.93 -0.34 0.86 16 26 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 27 H 0.05 0.68 6.70 -51.93 -0.35 0.33 16 28 H 0.00 -0.12 6.42 -51.93 -0.33 -0.45 16 29 H 0.04 0.97 6.34 -51.93 -0.33 0.64 16 30 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.05 0.85 7.15 -51.93 -0.37 0.48 16 32 H 0.08 1.14 6.07 -51.93 -0.31 0.83 16 33 H 0.15 2.42 8.06 -52.48 -0.42 1.99 16 34 H 0.14 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 308.58 15.07 4.65 4.65 Total: -1.00 -28.42 308.58 -10.56 -38.98 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -4.35 Total: -1.64 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: -0.74 Total: -19.01 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: -0.27 Total: -36.98 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -2.51 Total: -0.05 kcal Atomic # 35 Polarization: -0.14 SS G_CDS: -2.32 Total: -2.45 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.42 -10.56 -38.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530713.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.401 kcal (2) G-P(sol) polarization free energy of solvation -28.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds