Wall clock time and date at job start Tue Mar 31 2020 12:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47562 * 2 1 4 4 N 1.46897 * 109.47072 * 120.00020 * 2 1 3 5 5 C 1.46899 * 111.00012 * 169.65995 * 4 2 1 6 6 C 1.50705 * 109.47403 * 293.95684 * 5 4 2 7 7 H 1.08006 * 119.99535 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00208 * 180.02562 * 6 5 4 9 9 N 1.31510 * 119.99848 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 119.99839 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47465 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47374 * 120.00011 * 10 8 6 13 13 H 1.48508 * 109.47186 * 239.99868 * 10 8 6 14 14 C 1.46896 * 111.00166 * 293.61658 * 4 2 1 15 15 C 1.50702 * 109.47220 * 163.69246 * 14 4 2 16 16 C 1.33358 * 125.19566 * 94.57506 * 15 14 4 17 17 C 1.38452 * 114.92766 * 179.83447 * 16 15 14 18 18 C 1.33472 * 114.89501 * 0.45282 * 17 16 15 19 19 Br 1.89100 * 125.20960 * 179.75697 * 18 17 16 20 20 S 1.75880 * 125.19038 * 274.87996 * 15 14 4 21 21 H 1.09002 * 109.47078 * 306.50521 * 1 2 3 22 22 H 1.09001 * 109.47380 * 66.49977 * 1 2 3 23 23 H 1.08996 * 109.47501 * 186.49998 * 1 2 3 24 24 H 1.09004 * 109.47046 * 240.00079 * 2 1 3 25 25 H 1.08998 * 109.47446 * 179.97438 * 3 2 1 26 26 H 1.09008 * 109.47274 * 300.00196 * 3 2 1 27 27 H 1.09000 * 109.47198 * 59.99593 * 3 2 1 28 28 H 1.08997 * 109.47159 * 53.95633 * 5 4 2 29 29 H 1.09005 * 109.46959 * 173.95415 * 5 4 2 30 30 H 0.97002 * 119.99731 * 179.97438 * 9 8 6 31 31 H 1.09003 * 109.47122 * 283.69136 * 14 4 2 32 32 H 1.08998 * 109.47178 * 43.68739 * 14 4 2 33 33 H 1.08005 * 122.53361 * 0.02562 * 16 15 14 34 34 H 1.07999 * 122.55155 * 180.24151 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 3.4671 -0.9290 1.1167 6 6 3.7546 -1.8992 0.0000 7 1 2.9431 -2.3004 -0.5891 8 6 5.0535 -2.2756 -0.2690 9 7 6.0415 -1.7874 0.4487 10 14 5.4097 -3.4787 -1.6527 11 1 4.1354 -3.8775 -2.3024 12 1 6.2957 -2.8330 -2.6544 13 1 6.0814 -4.6829 -1.1010 14 6 1.6771 0.0559 2.4161 15 6 1.8243 -0.8427 3.6169 16 6 2.9117 -0.9286 4.3840 17 6 2.8142 -1.8227 5.4366 18 6 1.6498 -2.4700 5.5179 19 35 1.2066 -3.7558 6.8317 20 16 0.5908 -1.9441 4.2159 21 1 -0.3633 0.6114 0.8261 22 1 -0.3634 0.4098 -0.9424 23 1 -0.3634 -1.0210 0.1163 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 3.9785 0.0132 0.9200 29 1 3.8217 -1.3449 2.0598 30 1 6.9552 -2.0525 0.2597 31 1 2.3463 0.9104 2.5176 32 1 0.6474 0.4070 2.3490 33 1 3.8001 -0.3425 4.2001 34 1 3.6203 -1.9866 6.1365 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042530713.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:13 Heat of formation + Delta-G solvation = 17.787111 kcal Electronic energy + Delta-G solvation = -16857.582304 eV Core-core repulsion = 14155.660037 eV Total energy + Delta-G solvation = -2701.922267 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.85067 -38.36072 -34.86177 -33.55529 -32.24083 -30.71780 -28.37216 -27.95039 -26.11733 -24.14470 -23.73132 -20.66204 -19.99793 -18.36320 -18.12117 -16.81772 -16.60722 -16.23452 -15.79280 -15.09422 -14.71950 -14.24649 -14.13279 -14.03669 -13.82580 -13.42397 -13.16805 -13.09215 -12.77437 -12.67007 -12.53624 -12.30780 -12.05513 -11.85819 -11.81457 -11.69799 -11.40999 -11.28596 -11.11313 -10.56835 -9.51142 -9.40843 -8.91976 -8.16773 -6.23750 -0.19559 0.10945 0.82537 0.95710 1.38994 1.40936 1.52842 1.66465 2.41645 3.16751 3.38521 3.90145 4.11275 4.20856 4.34604 4.39453 4.54340 4.59327 4.63003 4.81695 4.86954 4.97035 5.03326 5.10804 5.18962 5.28320 5.32493 5.40461 5.50528 5.58196 5.71300 6.12848 6.43616 6.67836 6.92672 7.44558 8.94001 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.014598 B = 0.004543 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.564329 B = 6162.252265 C = 7341.772340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.075 3.925 3 C -0.173 4.173 4 N -0.532 5.532 5 C 0.206 3.794 6 C -0.515 4.515 7 H 0.058 0.942 8 C 0.005 3.995 9 N -0.931 5.931 10 Si 0.958 3.042 11 H -0.265 1.265 12 H -0.279 1.279 13 H -0.282 1.282 14 C 0.116 3.884 15 C -0.143 4.143 16 C -0.152 4.152 17 C -0.087 4.087 18 C -0.228 4.228 19 Br 0.013 6.987 20 S 0.181 5.819 21 H 0.063 0.937 22 H 0.073 0.927 23 H 0.053 0.947 24 H 0.065 0.935 25 H 0.029 0.971 26 H 0.073 0.927 27 H 0.064 0.936 28 H -0.030 1.030 29 H 0.013 0.987 30 H 0.261 0.739 31 H 0.047 0.953 32 H 0.103 0.897 33 H 0.136 0.864 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.481 1.575 10.861 16.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.033 4.033 3 C -0.232 4.232 4 N -0.256 5.256 5 C 0.080 3.920 6 C -0.553 4.553 7 H 0.076 0.924 8 C -0.193 4.193 9 N -0.572 5.572 10 Si 0.783 3.217 11 H -0.189 1.189 12 H -0.205 1.205 13 H -0.208 1.208 14 C -0.013 4.013 15 C -0.263 4.263 16 C -0.183 4.183 17 C -0.121 4.121 18 C -0.424 4.424 19 Br 0.097 6.903 20 S 0.444 5.556 21 H 0.082 0.918 22 H 0.092 0.908 23 H 0.072 0.928 24 H 0.083 0.917 25 H 0.048 0.952 26 H 0.092 0.908 27 H 0.083 0.917 28 H -0.012 1.012 29 H 0.031 0.969 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.121 0.879 33 H 0.154 0.846 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -14.198 0.255 10.931 17.920 hybrid contribution 2.958 0.729 -0.511 3.089 sum -11.240 0.983 10.421 15.359 Atomic orbital electron populations 1.21803 0.92869 1.01985 1.02337 1.21680 0.96122 0.92299 0.93219 1.22346 1.00278 0.97841 1.02689 1.62270 1.16502 1.45955 1.00830 1.19413 0.82805 0.93670 0.96082 1.21480 0.92138 1.25710 1.15988 0.92420 1.25761 0.96180 0.98319 0.99057 1.70073 0.99730 1.45798 1.41643 0.85505 0.78287 0.78713 0.79175 1.18900 1.20502 1.20841 1.20640 1.02086 0.92128 0.86449 1.24788 0.97928 1.02627 1.00942 1.20170 0.99154 1.02365 0.96585 1.20263 0.97034 0.95697 0.99153 1.26143 1.02926 1.08399 1.04947 1.96625 1.93228 1.51648 1.48826 1.83920 1.15691 1.36137 1.19848 0.91827 0.90849 0.92799 0.91684 0.95176 0.90833 0.91722 1.01207 0.96933 0.92974 0.93468 0.87931 0.84601 0.82435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.54 9.01 71.98 0.65 -2.89 16 2 C 0.08 2.66 2.78 44.91 0.12 2.78 16 3 C -0.17 -5.51 8.50 71.98 0.61 -4.90 16 4 N -0.53 -21.46 4.39 -880.08 -3.86 -25.32 16 5 C 0.21 10.52 4.45 85.56 0.38 10.90 16 6 C -0.51 -28.70 8.36 25.60 0.21 -28.48 16 7 H 0.06 3.20 7.18 -2.91 -0.02 3.18 16 8 C 0.00 0.26 5.46 84.65 0.46 0.73 16 9 N -0.93 -55.54 13.29 21.45 0.28 -55.25 16 10 Si 0.96 44.51 29.54 68.60 2.03 46.53 16 11 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 13 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 14 C 0.12 3.88 4.18 85.56 0.36 4.23 16 15 C -0.14 -4.80 5.52 24.58 0.14 -4.67 16 16 C -0.15 -5.14 8.83 21.22 0.19 -4.95 16 17 C -0.09 -2.65 10.11 21.24 0.21 -2.44 16 18 C -0.23 -6.64 6.97 66.74 0.46 -6.18 16 19 Br 0.01 0.32 34.07 -20.37 -0.69 -0.37 16 20 S 0.18 5.33 23.33 -56.49 -1.32 4.01 16 21 H 0.06 1.46 6.57 -2.39 -0.02 1.45 16 22 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.06 2.69 6.64 -2.38 -0.02 2.67 16 25 H 0.03 1.15 6.59 -2.39 -0.02 1.13 16 26 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 27 H 0.06 1.80 6.70 -2.39 -0.02 1.78 16 28 H -0.03 -1.64 6.42 -2.39 -0.02 -1.65 16 29 H 0.01 0.70 6.34 -2.38 -0.02 0.68 16 30 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 31 H 0.05 1.60 7.15 -2.39 -0.02 1.58 16 32 H 0.10 2.84 6.07 -2.39 -0.01 2.82 16 33 H 0.14 4.74 8.06 -2.91 -0.02 4.72 16 34 H 0.16 4.13 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -61.40 308.58 1.34 -60.06 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 1.10 Total: 6.20 kcal Atomic # 6 Polarization: -39.67 SS G_CDS: 3.80 Total: -35.86 kcal Atomic # 7 Polarization: -77.00 SS G_CDS: -3.58 Total: -80.57 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: 5.33 SS G_CDS: -1.32 Total: 4.01 kcal Atomic # 35 Polarization: 0.32 SS G_CDS: -0.69 Total: -0.37 kcal Total: -61.40 1.34 -60.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530713.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.844 kcal (2) G-P(sol) polarization free energy of solvation -61.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds