Wall clock time and date at job start Tue Mar 31 2020 12:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46915 * 2 1 4 4 N 1.46903 * 109.46869 * 119.99959 * 2 1 3 5 5 C 1.46897 * 111.00025 * 296.91687 * 4 2 1 6 6 C 1.50694 * 109.47413 * 164.50606 * 5 4 2 7 7 H 1.08008 * 119.99732 * 355.37582 * 6 5 4 8 8 C 1.37871 * 120.00684 * 175.37625 * 6 5 4 9 9 N 1.31515 * 119.99716 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00577 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47068 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47322 * 119.99860 * 10 8 6 13 13 H 1.48504 * 109.47588 * 240.00250 * 10 8 6 14 14 C 1.46904 * 110.99705 * 172.96720 * 4 2 1 15 15 C 1.50698 * 109.46786 * 293.95044 * 14 4 2 16 16 C 1.33396 * 125.20084 * 90.00186 * 15 14 4 17 17 C 1.38465 * 114.92015 * 179.97438 * 16 15 14 18 18 Br 1.89105 * 122.54742 * 179.97438 * 17 16 15 19 19 C 1.33428 * 114.90220 * 0.02562 * 17 16 15 20 20 S 1.75885 * 125.19752 * 269.69801 * 15 14 4 21 21 H 1.08996 * 109.46869 * 306.59987 * 1 2 3 22 22 H 1.08998 * 109.47052 * 66.60283 * 1 2 3 23 23 H 1.09004 * 109.47146 * 186.60565 * 1 2 3 24 24 H 1.09002 * 109.47167 * 239.99434 * 2 1 3 25 25 H 1.09005 * 109.46703 * 180.02562 * 3 2 1 26 26 H 1.09004 * 109.46851 * 299.99440 * 3 2 1 27 27 H 1.08997 * 109.47057 * 60.00107 * 3 2 1 28 28 H 1.09000 * 109.47256 * 284.50443 * 5 4 2 29 29 H 1.09004 * 109.47179 * 44.50494 * 5 4 2 30 30 H 0.97003 * 120.00037 * 179.97438 * 9 8 6 31 31 H 1.08997 * 109.47094 * 53.95109 * 14 4 2 32 32 H 1.08998 * 109.46839 * 173.95386 * 14 4 2 33 33 H 1.08004 * 122.53986 * 0.02562 * 16 15 14 34 34 H 1.08000 * 125.20143 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.6098 0.0149 2.4199 6 6 1.7860 -0.8928 3.6099 7 1 2.0931 -1.9182 3.4661 8 6 1.5551 -0.4144 4.8821 9 7 1.1806 0.8341 5.0573 10 14 1.7728 -1.5397 6.3571 11 1 2.1961 -2.8859 5.8945 12 1 2.8101 -0.9782 7.2594 13 1 0.4860 -1.6498 7.0902 14 6 3.4785 -0.8592 1.1524 15 6 3.8412 -1.7927 0.0264 16 6 4.1015 -1.4200 -1.2278 17 6 4.4129 -2.4564 -2.0916 18 35 4.8174 -2.1725 -3.9170 19 6 4.4049 -3.6705 -1.5385 20 16 3.9936 -3.5393 0.1666 21 1 -0.3633 0.6127 0.8250 22 1 -0.3633 0.4081 -0.9432 23 1 -0.3634 -1.0209 0.1182 24 1 1.8934 -0.5139 -0.8899 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9563 -0.8901 27 1 1.6767 1.9563 0.8900 28 1 2.2253 0.9053 2.5479 29 1 0.5626 0.3060 2.3369 30 1 1.0178 1.1706 5.9523 31 1 3.9497 0.1096 0.9874 32 1 3.8270 -1.2767 2.0970 33 1 4.0723 -0.3881 -1.5451 34 1 4.6229 -4.5924 -2.0572 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043687117.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:22 Heat of formation + Delta-G solvation = 34.111373 kcal Electronic energy + Delta-G solvation = -16880.292570 eV Core-core repulsion = 14179.078177 eV Total energy + Delta-G solvation = -2701.214393 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.62431 -37.06225 -32.83025 -32.12899 -30.69930 -29.34894 -26.99726 -26.51138 -25.03194 -22.52786 -22.15016 -19.04855 -18.75567 -17.02791 -16.49604 -15.38834 -15.00637 -14.69952 -14.11909 -13.58536 -13.52750 -12.98605 -12.96463 -12.49572 -12.32334 -12.12919 -11.69283 -11.46714 -11.16402 -10.95739 -10.89089 -10.71081 -10.65067 -10.52397 -10.40150 -10.27672 -10.18655 -9.66977 -9.25780 -8.57593 -8.44476 -8.25926 -7.27908 -6.05611 -4.06999 0.99352 1.23134 1.89977 2.42814 2.56840 3.28561 3.36720 3.41032 4.40043 4.86250 4.97996 5.22685 5.29786 5.45666 5.52066 5.63945 5.77274 5.89419 5.98584 6.08885 6.17298 6.19806 6.31375 6.36143 6.43720 6.54134 6.76488 6.80865 7.24723 7.33453 7.78818 8.05931 8.13204 8.51183 9.01433 9.57694 11.04661 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.022999 B = 0.003958 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.130417 B = 7072.244018 C = 7932.324399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.071 3.929 3 C -0.185 4.185 4 N -0.523 5.523 5 C 0.190 3.810 6 C -0.508 4.508 7 H 0.062 0.938 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.894 3.106 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.121 3.879 15 C -0.128 4.128 16 C -0.142 4.142 17 C -0.091 4.091 18 Br -0.046 7.046 19 C -0.210 4.210 20 S 0.167 5.833 21 H 0.060 0.940 22 H 0.045 0.955 23 H 0.059 0.941 24 H 0.071 0.929 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.065 0.935 28 H -0.001 1.001 29 H 0.037 0.963 30 H 0.260 0.740 31 H 0.049 0.951 32 H 0.097 0.903 33 H 0.143 0.857 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.035 -5.576 -16.701 18.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.038 4.038 3 C -0.244 4.244 4 N -0.248 5.248 5 C 0.065 3.935 6 C -0.547 4.547 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.722 3.278 11 H -0.196 1.196 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.008 4.008 15 C -0.248 4.248 16 C -0.172 4.172 17 C -0.184 4.184 18 Br 0.037 6.963 19 C -0.348 4.348 20 S 0.431 5.569 21 H 0.079 0.921 22 H 0.064 0.936 23 H 0.078 0.922 24 H 0.089 0.911 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.017 0.983 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.115 0.885 33 H 0.160 0.840 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 6.741 -6.854 -16.009 18.674 hybrid contribution 0.501 1.252 0.042 1.350 sum 7.242 -5.601 -15.967 18.406 Atomic orbital electron populations 1.21805 0.94875 1.02352 1.00622 1.21701 0.95651 0.91898 0.94587 1.22475 1.00815 0.99040 1.02055 1.62392 1.08145 1.50986 1.03235 1.19817 0.96290 0.92634 0.84760 1.21216 1.45518 0.97728 0.90219 0.91938 1.24965 0.95431 0.95066 0.98993 1.69961 1.47124 1.14444 1.22189 0.86506 0.77729 0.80965 0.82633 1.19623 1.21135 1.21020 1.20576 0.90936 0.94815 0.94496 1.24776 1.03923 0.97267 0.98793 1.19837 1.05632 0.99854 0.91917 1.20576 1.10528 0.95102 0.92175 1.96638 1.93541 1.97263 1.08860 1.25671 1.09291 1.00529 0.99357 1.84557 1.65022 1.03330 1.04006 0.92100 0.93586 0.92161 0.91118 0.93232 0.93226 0.91636 0.98311 0.94498 0.92992 0.93351 0.88524 0.83974 0.81488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 8.91 37.16 0.33 -2.02 16 2 C 0.07 1.23 2.76 -67.71 -0.19 1.04 16 3 C -0.18 -3.03 8.52 37.16 0.32 -2.71 16 4 N -0.52 -10.59 4.42 -229.52 -1.01 -11.60 16 5 C 0.19 4.63 3.59 -4.98 -0.02 4.61 16 6 C -0.51 -13.66 8.38 -34.45 -0.29 -13.95 16 7 H 0.06 1.68 7.69 -52.48 -0.40 1.28 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -25.88 13.29 55.43 0.74 -25.15 16 10 Si 0.89 21.14 29.54 -169.99 -5.02 16.11 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.12 2.22 5.16 -4.97 -0.03 2.19 16 15 C -0.13 -2.01 5.45 -36.00 -0.20 -2.21 16 16 C -0.14 -2.03 8.31 -41.19 -0.34 -2.37 16 17 C -0.09 -1.20 6.17 -41.18 -0.25 -1.45 16 18 Br -0.05 -0.53 33.87 -68.01 -2.30 -2.84 16 19 C -0.21 -2.60 11.05 29.05 0.32 -2.28 16 20 S 0.17 2.35 23.33 -107.50 -2.51 -0.16 16 21 H 0.06 1.12 6.50 -51.93 -0.34 0.78 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.07 1.17 5.88 -51.93 -0.31 0.87 16 25 H 0.05 0.78 6.47 -51.93 -0.34 0.45 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 1.21 6.72 -51.93 -0.35 0.86 16 28 H 0.00 -0.02 7.12 -51.93 -0.37 -0.39 16 29 H 0.04 0.97 5.91 -51.93 -0.31 0.66 16 30 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.05 0.86 6.26 -51.93 -0.33 0.54 16 32 H 0.10 1.93 7.16 -51.93 -0.37 1.55 16 33 H 0.14 1.95 8.01 -52.48 -0.42 1.53 16 34 H 0.17 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 308.03 15.07 4.64 4.64 Total: -1.00 -27.62 308.03 -10.26 -37.88 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -4.35 Total: -1.20 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -0.44 Total: -17.69 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: -0.28 Total: -36.75 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -2.51 Total: -0.16 kcal Atomic # 35 Polarization: -0.53 SS G_CDS: -2.30 Total: -2.84 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.62 -10.26 -37.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043687117.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.991 kcal (2) G-P(sol) polarization free energy of solvation -27.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds