Wall clock time and date at job start Tue Mar 31 2020 12:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46915 * 2 1 4 4 N 1.46903 * 109.46869 * 119.99959 * 2 1 3 5 5 C 1.46897 * 111.00025 * 296.91687 * 4 2 1 6 6 C 1.50694 * 109.47413 * 164.50606 * 5 4 2 7 7 H 1.08008 * 119.99732 * 355.37582 * 6 5 4 8 8 C 1.37871 * 120.00684 * 175.37625 * 6 5 4 9 9 N 1.31515 * 119.99716 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00577 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47068 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47322 * 119.99860 * 10 8 6 13 13 H 1.48504 * 109.47588 * 240.00250 * 10 8 6 14 14 C 1.46904 * 110.99705 * 172.96720 * 4 2 1 15 15 C 1.50698 * 109.46786 * 293.95044 * 14 4 2 16 16 C 1.33396 * 125.20084 * 90.00186 * 15 14 4 17 17 C 1.38465 * 114.92015 * 179.97438 * 16 15 14 18 18 Br 1.89105 * 122.54742 * 179.97438 * 17 16 15 19 19 C 1.33428 * 114.90220 * 0.02562 * 17 16 15 20 20 S 1.75885 * 125.19752 * 269.69801 * 15 14 4 21 21 H 1.08996 * 109.46869 * 306.59987 * 1 2 3 22 22 H 1.08998 * 109.47052 * 66.60283 * 1 2 3 23 23 H 1.09004 * 109.47146 * 186.60565 * 1 2 3 24 24 H 1.09002 * 109.47167 * 239.99434 * 2 1 3 25 25 H 1.09005 * 109.46703 * 180.02562 * 3 2 1 26 26 H 1.09004 * 109.46851 * 299.99440 * 3 2 1 27 27 H 1.08997 * 109.47057 * 60.00107 * 3 2 1 28 28 H 1.09000 * 109.47256 * 284.50443 * 5 4 2 29 29 H 1.09004 * 109.47179 * 44.50494 * 5 4 2 30 30 H 0.97003 * 120.00037 * 179.97438 * 9 8 6 31 31 H 1.08997 * 109.47094 * 53.95109 * 14 4 2 32 32 H 1.08998 * 109.46839 * 173.95386 * 14 4 2 33 33 H 1.08004 * 122.53986 * 0.02562 * 16 15 14 34 34 H 1.08000 * 125.20143 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.6098 0.0149 2.4199 6 6 1.7860 -0.8928 3.6099 7 1 2.0931 -1.9182 3.4661 8 6 1.5551 -0.4144 4.8821 9 7 1.1806 0.8341 5.0573 10 14 1.7728 -1.5397 6.3571 11 1 2.1961 -2.8859 5.8945 12 1 2.8101 -0.9782 7.2594 13 1 0.4860 -1.6498 7.0902 14 6 3.4785 -0.8592 1.1524 15 6 3.8412 -1.7927 0.0264 16 6 4.1015 -1.4200 -1.2278 17 6 4.4129 -2.4564 -2.0916 18 35 4.8174 -2.1725 -3.9170 19 6 4.4049 -3.6705 -1.5385 20 16 3.9936 -3.5393 0.1666 21 1 -0.3633 0.6127 0.8250 22 1 -0.3633 0.4081 -0.9432 23 1 -0.3634 -1.0209 0.1182 24 1 1.8934 -0.5139 -0.8899 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9563 -0.8901 27 1 1.6767 1.9563 0.8900 28 1 2.2253 0.9053 2.5479 29 1 0.5626 0.3060 2.3369 30 1 1.0178 1.1706 5.9523 31 1 3.9497 0.1096 0.9874 32 1 3.8270 -1.2767 2.0970 33 1 4.0723 -0.3881 -1.5451 34 1 4.6229 -4.5924 -2.0572 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043687117.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:21 Heat of formation + Delta-G solvation = 19.073976 kcal Electronic energy + Delta-G solvation = -16880.944641 eV Core-core repulsion = 14179.078177 eV Total energy + Delta-G solvation = -2701.866464 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -39.99389 -38.34965 -34.87035 -33.41191 -32.00394 -30.68803 -28.57474 -27.99283 -26.50476 -24.33265 -23.41479 -20.34038 -20.08520 -18.70824 -18.00995 -16.80551 -16.51251 -16.34436 -15.77188 -15.03397 -14.85431 -14.28707 -14.16716 -14.02333 -13.81290 -13.66555 -13.06844 -12.95011 -12.92674 -12.49926 -12.47035 -12.21366 -12.08484 -12.03629 -11.77728 -11.59995 -11.33179 -11.23584 -11.16321 -10.56143 -9.71180 -9.33928 -8.93211 -8.16598 -6.25534 -0.09791 0.20780 0.77016 1.38655 1.40708 1.42400 1.46126 1.54787 2.42003 3.16055 3.37148 3.80382 4.06191 4.11843 4.24801 4.35349 4.44025 4.53749 4.66436 4.78298 4.86430 4.93092 4.94535 5.05717 5.12330 5.18722 5.24674 5.38493 5.39939 5.47941 5.70552 6.13082 6.36669 6.68753 6.91400 7.43983 8.93449 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.022999 B = 0.003958 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.130417 B = 7072.244018 C = 7932.324399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.070 3.930 3 C -0.177 4.177 4 N -0.530 5.530 5 C 0.210 3.790 6 C -0.519 4.519 7 H 0.059 0.941 8 C 0.006 3.994 9 N -0.932 5.932 10 Si 0.959 3.041 11 H -0.264 1.264 12 H -0.280 1.280 13 H -0.280 1.280 14 C 0.129 3.871 15 C -0.156 4.156 16 C -0.127 4.127 17 C -0.107 4.107 18 Br -0.026 7.026 19 C -0.186 4.186 20 S 0.161 5.839 21 H 0.036 0.964 22 H 0.077 0.923 23 H 0.051 0.949 24 H 0.088 0.912 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.035 0.965 28 H -0.028 1.028 29 H 0.015 0.985 30 H 0.263 0.737 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.148 0.852 34 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.698 -6.911 -18.389 21.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.039 4.039 3 C -0.236 4.236 4 N -0.255 5.255 5 C 0.084 3.916 6 C -0.558 4.558 7 H 0.077 0.923 8 C -0.192 4.192 9 N -0.573 5.573 10 Si 0.785 3.215 11 H -0.188 1.188 12 H -0.206 1.206 13 H -0.206 1.206 14 C 0.000 4.000 15 C -0.275 4.275 16 C -0.158 4.158 17 C -0.200 4.200 18 Br 0.057 6.943 19 C -0.325 4.325 20 S 0.424 5.576 21 H 0.055 0.945 22 H 0.096 0.904 23 H 0.071 0.929 24 H 0.106 0.894 25 H 0.072 0.928 26 H 0.096 0.904 27 H 0.055 0.945 28 H -0.011 1.011 29 H 0.033 0.967 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.165 0.835 34 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 7.412 -8.197 -17.718 20.882 hybrid contribution 0.327 1.650 0.433 1.737 sum 7.739 -6.547 -17.285 20.038 Atomic orbital electron populations 1.21778 0.94546 1.01582 1.01359 1.21806 0.95939 0.92425 0.93703 1.22380 1.01001 0.98245 1.01949 1.62287 1.09758 1.50715 1.02701 1.19386 0.94430 0.91485 0.86324 1.21520 1.45045 0.97829 0.91398 0.92320 1.25787 0.95120 0.96422 1.01884 1.70080 1.48202 1.16156 1.22895 0.85482 0.77733 0.79282 0.79048 1.18799 1.20584 1.20634 1.20343 0.89509 0.95449 0.94695 1.24407 1.06761 0.97852 0.98514 1.19936 1.03950 1.00525 0.91418 1.20646 1.11131 0.94963 0.93243 1.96663 1.93433 1.97246 1.06953 1.25992 1.06950 1.01439 0.98105 1.84576 1.65251 1.02107 1.05665 0.94465 0.90386 0.92950 0.89441 0.92840 0.90409 0.94536 1.01068 0.96731 0.92862 0.93438 0.90981 0.83450 0.78704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.51 8.91 71.98 0.64 -3.87 16 2 C 0.07 2.39 2.76 44.92 0.12 2.51 16 3 C -0.18 -5.73 8.52 71.98 0.61 -5.11 16 4 N -0.53 -21.88 4.42 -880.06 -3.89 -25.76 16 5 C 0.21 10.68 3.59 85.56 0.31 10.99 16 6 C -0.52 -28.71 8.38 25.60 0.21 -28.49 16 7 H 0.06 3.22 7.69 -2.91 -0.02 3.20 16 8 C 0.01 0.33 5.46 84.65 0.46 0.79 16 9 N -0.93 -55.20 13.29 21.44 0.28 -54.91 16 10 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 11 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 13 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 14 C 0.13 4.81 5.16 85.56 0.44 5.25 16 15 C -0.16 -4.78 5.45 24.59 0.13 -4.65 16 16 C -0.13 -3.39 8.31 21.23 0.18 -3.22 16 17 C -0.11 -2.54 6.17 21.23 0.13 -2.41 16 18 Br -0.03 -0.53 33.87 -20.37 -0.69 -1.22 16 19 C -0.19 -4.08 11.05 66.73 0.74 -3.34 16 20 S 0.16 4.29 23.33 -56.49 -1.32 2.97 16 21 H 0.04 1.40 6.50 -2.39 -0.02 1.38 16 22 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 23 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 24 H 0.09 2.74 5.88 -2.39 -0.01 2.73 16 25 H 0.05 1.66 6.47 -2.38 -0.02 1.65 16 26 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 27 H 0.04 1.38 6.72 -2.39 -0.02 1.37 16 28 H -0.03 -1.58 7.12 -2.39 -0.02 -1.60 16 29 H 0.01 0.81 5.91 -2.38 -0.01 0.79 16 30 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 31 H 0.05 1.74 6.26 -2.39 -0.01 1.72 16 32 H 0.07 2.99 7.16 -2.39 -0.02 2.97 16 33 H 0.15 3.73 8.01 -2.91 -0.02 3.71 16 34 H 0.20 3.13 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -59.91 308.03 1.50 -58.41 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 1.10 Total: 6.20 kcal Atomic # 6 Polarization: -35.53 SS G_CDS: 3.98 Total: -31.54 kcal Atomic # 7 Polarization: -77.07 SS G_CDS: -3.60 Total: -80.68 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: 4.29 SS G_CDS: -1.32 Total: 2.97 kcal Atomic # 35 Polarization: -0.53 SS G_CDS: -0.69 Total: -1.22 kcal Total: -59.91 1.50 -58.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043687117.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.485 kcal (2) G-P(sol) polarization free energy of solvation -59.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds