Wall clock time and date at job start Tue Mar 31 2020 11:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36882 * 120.00096 * 2 1 4 4 H 1.08001 * 120.00012 * 185.21730 * 3 2 1 5 5 C 1.39033 * 119.99949 * 5.20880 * 3 2 1 6 6 N 1.31374 * 120.00252 * 5.21813 * 5 3 2 7 7 Si 1.86811 * 120.00070 * 185.21617 * 5 3 2 8 8 H 1.48494 * 109.47090 * 90.00395 * 7 5 3 9 9 H 1.48498 * 109.46958 * 210.00523 * 7 5 3 10 10 H 1.48497 * 109.46756 * 330.00399 * 7 5 3 11 11 C 1.34779 * 120.00103 * 180.02562 * 2 1 3 12 12 O 1.21602 * 120.00128 * 185.66045 * 11 2 1 13 13 C 1.47613 * 119.99957 * 5.65168 * 11 2 1 14 14 C 1.39720 * 120.14503 * 54.74942 * 13 11 2 15 15 C 1.37837 * 119.86847 * 180.24905 * 14 13 11 16 16 C 1.38559 * 120.17573 * 0.05179 * 15 14 13 17 17 Br 1.89097 * 119.84468 * 179.97438 * 16 15 14 18 18 C 1.38401 * 120.30703 * 359.95015 * 16 15 14 19 19 C 1.38086 * 120.13092 * 0.02562 * 18 16 15 20 20 Cl 1.73590 * 120.09368 * 179.97438 * 19 18 16 21 21 H 1.08998 * 109.46772 * 175.11178 * 1 2 3 22 22 H 1.09001 * 109.47073 * 295.11145 * 1 2 3 23 23 H 1.09000 * 109.47301 * 55.11129 * 1 2 3 24 24 H 0.96996 * 119.99895 * 179.97438 * 6 5 3 25 25 H 1.07999 * 120.07291 * 0.25390 * 14 13 11 26 26 H 1.07998 * 119.91417 * 179.97438 * 15 14 13 27 27 H 1.07995 * 119.93671 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1854 0.0000 4 1 3.2261 1.1873 -0.0851 5 6 1.4586 2.3870 0.1093 6 7 0.1611 2.3824 0.3154 7 14 2.3753 4.0082 -0.0369 8 1 2.3985 4.4373 -1.4583 9 1 1.6888 5.0404 0.7807 10 1 3.7672 3.8354 0.4508 11 6 2.1389 -1.1672 -0.0005 12 8 3.3505 -1.1698 0.1033 13 6 1.4062 -2.4424 -0.1270 14 6 0.5397 -2.6500 -1.2032 15 6 -0.1455 -3.8410 -1.3129 16 6 0.0222 -4.8314 -0.3586 17 35 -0.9231 -6.4614 -0.5179 18 6 0.8787 -4.6335 0.7104 19 6 1.5718 -3.4455 0.8325 20 17 2.6453 -3.1980 2.1741 21 1 -0.3633 -1.0239 -0.0876 22 1 -0.3633 0.4361 0.9305 23 1 -0.3634 0.5878 -0.8429 24 1 -0.3207 3.2207 0.3921 25 1 0.4070 -1.8790 -1.9477 26 1 -0.8158 -4.0021 -2.1442 27 1 1.0052 -5.4097 1.4505 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049270.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:36 Heat of formation + Delta-G solvation = -10.240156 kcal Electronic energy + Delta-G solvation = -16312.034567 eV Core-core repulsion = 13335.187051 eV Total energy + Delta-G solvation = -2976.847515 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 316.956 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.20344 -39.36183 -37.52305 -36.73877 -34.01113 -33.16014 -32.05162 -30.60296 -28.29136 -26.59353 -24.19178 -23.93667 -21.26634 -19.11368 -18.45216 -17.56887 -17.03227 -16.72548 -16.09044 -15.65236 -15.42113 -15.00638 -14.82010 -14.44737 -13.75372 -13.55517 -13.06578 -12.99719 -12.86580 -12.72413 -12.68202 -12.36562 -12.14527 -11.96212 -11.58730 -11.35934 -11.08561 -10.51407 -10.03535 -9.94264 -9.72174 -8.30626 -5.94881 -0.38477 -0.00816 0.37280 1.11156 1.35694 1.40993 1.53184 1.86308 2.20507 2.37396 2.93806 3.09130 3.61589 3.78853 3.92595 4.08442 4.15744 4.53897 4.60679 4.77299 4.91934 5.07034 5.14200 5.39956 5.41425 5.46315 5.96303 6.40586 7.09179 7.37310 7.92551 8.60499 Molecular weight = 316.96amu Principal moments of inertia in cm(-1) A = 0.027030 B = 0.004032 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.621189 B = 6943.005614 C = 7632.031981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.442 5.442 3 C -0.338 4.338 4 H 0.081 0.919 5 C -0.001 4.001 6 N -0.889 5.889 7 Si 0.995 3.005 8 H -0.265 1.265 9 H -0.270 1.270 10 H -0.276 1.276 11 C 0.460 3.540 12 O -0.619 6.619 13 C -0.089 4.089 14 C -0.080 4.080 15 C -0.074 4.074 16 C -0.077 4.077 17 Br -0.016 7.016 18 C -0.080 4.080 19 C -0.018 4.018 20 Cl -0.060 7.060 21 H 0.060 0.940 22 H 0.056 0.944 23 H 0.059 0.941 24 H 0.275 0.725 25 H 0.149 0.851 26 H 0.176 0.824 27 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.997 -15.828 -2.659 17.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.158 5.158 3 C -0.466 4.466 4 H 0.099 0.901 5 C -0.203 4.203 6 N -0.528 5.528 7 Si 0.818 3.182 8 H -0.191 1.191 9 H -0.194 1.194 10 H -0.201 1.201 11 C 0.249 3.751 12 O -0.507 6.507 13 C -0.094 4.094 14 C -0.100 4.100 15 C -0.094 4.094 16 C -0.157 4.157 17 Br 0.069 6.931 18 C -0.101 4.101 19 C -0.046 4.046 20 Cl -0.031 7.031 21 H 0.078 0.922 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.085 0.915 25 H 0.167 0.833 26 H 0.193 0.807 27 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -7.872 -16.219 -2.512 18.202 hybrid contribution 0.877 1.441 0.350 1.723 sum -6.995 -14.777 -2.163 16.492 Atomic orbital electron populations 1.21811 0.78549 0.98538 1.03228 1.43849 1.07229 1.04489 1.60255 1.19799 0.93101 0.83498 1.50197 0.90144 1.26110 0.96763 1.02304 0.95138 1.70218 1.07576 1.28609 1.46444 0.84904 0.77853 0.76571 0.78861 1.19053 1.19421 1.20142 1.18205 0.87273 0.83829 0.85765 1.90606 1.15149 1.87135 1.57791 1.20123 0.98287 0.94336 0.96636 1.21437 0.93828 0.98472 0.96249 1.21410 0.98682 0.90589 0.98700 1.21907 1.00550 0.94999 0.98290 1.96745 1.73195 1.25102 1.98009 1.21046 0.94932 0.95522 0.98574 1.20980 0.96708 0.95561 0.91383 1.98380 1.63725 1.96911 1.44084 0.92174 0.92510 0.92259 0.91455 0.83327 0.80684 0.81831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.43 8.28 127.77 1.06 6.49 15 2 N -0.44 -22.96 3.02 -662.45 -2.00 -24.96 15 3 C -0.34 -19.06 9.55 84.10 0.80 -18.26 15 4 H 0.08 4.86 7.20 -2.91 -0.02 4.84 15 5 C 0.00 -0.06 5.42 84.95 0.46 0.40 15 6 N -0.89 -45.22 9.52 21.68 0.21 -45.01 15 7 Si 1.00 41.65 29.56 68.60 2.03 43.68 15 8 H -0.27 -10.63 7.11 99.48 0.71 -9.92 15 9 H -0.27 -10.68 7.11 99.48 0.71 -9.97 15 10 H -0.28 -11.88 7.11 99.48 0.71 -11.18 15 11 C 0.46 23.11 6.49 86.72 0.56 23.67 15 12 O -0.62 -35.72 15.81 -4.04 -0.06 -35.78 15 13 C -0.09 -3.48 4.68 -20.07 -0.09 -3.57 15 14 C -0.08 -2.43 7.55 22.53 0.17 -2.26 15 15 C -0.07 -1.71 9.77 22.25 0.22 -1.49 15 16 C -0.08 -1.79 6.23 22.39 0.14 -1.65 15 17 Br -0.02 -0.29 33.69 -20.37 -0.69 -0.98 15 18 C -0.08 -2.14 9.55 22.27 0.21 -1.93 15 19 C -0.02 -0.62 6.35 22.61 0.14 -0.47 15 20 Cl -0.06 -2.26 27.40 -2.72 -0.07 -2.34 15 21 H 0.06 2.25 4.81 -2.39 -0.01 2.24 15 22 H 0.06 2.75 6.89 -2.39 -0.02 2.74 15 23 H 0.06 2.70 7.24 -2.39 -0.02 2.68 15 24 H 0.28 13.04 8.31 -92.71 -0.77 12.27 15 25 H 0.15 4.32 7.80 -2.91 -0.02 4.30 15 26 H 0.18 2.77 8.06 -2.91 -0.02 2.75 15 27 H 0.16 3.57 8.06 -2.91 -0.02 3.55 15 Total: -1.00 -64.46 272.53 4.30 -60.17 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: 1.21 Total: 4.29 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 3.67 Total: 0.93 kcal Atomic # 7 Polarization: -68.18 SS G_CDS: -1.79 Total: -69.97 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -0.06 Total: -35.78 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Atomic # 17 Polarization: -2.26 SS G_CDS: -0.07 Total: -2.34 kcal Atomic # 35 Polarization: -0.29 SS G_CDS: -0.69 Total: -0.98 kcal Total: -64.46 4.30 -60.17 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049270.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.928 kcal (2) G-P(sol) polarization free energy of solvation -64.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds