Wall clock time and date at job start Tue Mar 31 2020 11:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.76205 * 102.99914 * 2 1 4 4 C 1.38772 * 120.08974 * 359.72334 * 3 2 1 5 5 C 1.38199 * 120.00150 * 180.25160 * 4 3 2 6 6 C 1.38392 * 120.18678 * 0.04720 * 5 4 3 7 7 Cl 1.73607 * 119.90979 * 179.97438 * 6 5 4 8 8 C 1.38343 * 120.18560 * 359.95474 * 6 5 4 9 9 C 1.38653 * 119.99543 * 0.02562 * 8 6 5 10 10 N 1.40130 * 120.09570 * 179.97438 * 9 8 6 11 11 C 1.34783 * 120.00040 * 24.82016 * 10 9 8 12 12 O 1.21301 * 119.99736 * 5.52534 * 11 10 9 13 13 C 1.50694 * 120.00009 * 185.52979 * 11 10 9 14 14 S 1.81008 * 109.46981 * 179.97438 * 13 11 10 15 15 C 1.76202 * 99.99726 * 180.02562 * 14 13 11 16 16 H 1.07992 * 120.00396 * 359.97438 * 15 14 13 17 17 C 1.38802 * 119.99514 * 180.02562 * 15 14 13 18 18 N 1.31630 * 119.99954 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99722 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47280 * 89.99731 * 19 17 15 21 21 H 1.48498 * 109.46735 * 209.99444 * 19 17 15 22 22 H 1.48495 * 109.46957 * 329.99453 * 19 17 15 23 23 H 1.09005 * 109.46876 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47177 * 299.99366 * 1 2 3 25 25 H 1.08998 * 109.47566 * 60.00289 * 1 2 3 26 26 H 1.08006 * 120.00042 * 0.25357 * 4 3 2 27 27 H 1.08005 * 119.90674 * 180.02562 * 5 4 3 28 28 H 1.07995 * 120.00494 * 180.02562 * 8 6 5 29 29 H 0.96999 * 120.00087 * 204.82583 * 10 9 8 30 30 H 1.08997 * 109.47270 * 299.99906 * 13 11 10 31 31 H 1.09000 * 109.47439 * 59.99691 * 13 11 10 32 32 H 0.97005 * 119.99646 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1969 2.6649 -0.0058 5 6 1.5098 4.0110 -0.0110 6 6 2.8326 4.4179 -0.0115 7 17 3.2175 6.1107 -0.0188 8 6 3.8490 3.4794 -0.0058 9 6 3.5437 2.1269 -0.0001 10 7 4.5716 1.1746 0.0051 11 6 5.7855 1.4958 0.4949 12 8 5.9608 2.5742 1.0221 13 6 6.9249 0.5155 0.3875 14 16 8.4111 1.2340 1.1301 15 6 9.5504 -0.0852 0.8721 16 1 9.2263 -0.9900 0.3797 17 6 10.8641 0.0383 1.3028 18 7 11.2589 1.1410 1.9035 19 14 12.0718 -1.3604 1.0299 20 1 12.7464 -1.1833 -0.2811 21 1 13.0871 -1.3562 2.1136 22 1 11.3419 -2.6536 1.0404 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.1635 2.3507 -0.0062 27 1 0.7199 4.7475 -0.0151 28 1 4.8802 3.8002 -0.0058 29 1 4.4096 0.2841 -0.3438 30 1 6.6641 -0.4036 0.9122 31 1 7.1151 0.2929 -0.6624 32 1 12.1771 1.2274 2.2041 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049305794.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:22 Heat of formation + Delta-G solvation = -14.897924 kcal Electronic energy + Delta-G solvation = -18535.913374 eV Core-core repulsion = 15353.921240 eV Total energy + Delta-G solvation = -3181.992134 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 317.005 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.52349 -38.51574 -36.56594 -34.71925 -32.46902 -31.43113 -30.69073 -29.20439 -28.44650 -25.53315 -23.46702 -22.88597 -20.51650 -18.58685 -17.78689 -17.33318 -16.64837 -15.84041 -15.60188 -15.02035 -14.83669 -14.67949 -14.37979 -14.25370 -13.94551 -13.61740 -13.43603 -13.00367 -12.69861 -12.56295 -12.37091 -12.02389 -11.79362 -11.09901 -11.07025 -11.04449 -10.81059 -10.65404 -10.47496 -9.88114 -9.71357 -9.50926 -9.10287 -8.52272 -8.32402 -7.54036 -6.56531 -6.25721 -3.97471 0.77212 1.04335 1.13399 1.95465 2.10023 2.74439 2.80710 3.20754 3.24217 3.28751 3.42652 3.53100 4.15699 4.46434 4.65720 4.66405 4.81402 4.86283 5.07739 5.09905 5.10676 5.25774 5.41477 5.59550 5.72071 5.75239 5.88813 6.01901 6.06084 6.17879 6.68284 7.32755 7.56206 8.23891 8.31347 9.19810 10.81670 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.016023 B = 0.003280 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.060781 B = 8534.105802 C =10180.904571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.112 6.112 3 C -0.124 4.124 4 C -0.101 4.101 5 C -0.119 4.119 6 C -0.013 4.013 7 Cl -0.063 7.063 8 C -0.111 4.111 9 C 0.198 3.802 10 N -0.671 5.671 11 C 0.533 3.467 12 O -0.489 6.489 13 C -0.155 4.155 14 S -0.054 6.054 15 C -0.537 4.537 16 H 0.074 0.926 17 C 0.075 3.925 18 N -0.867 5.867 19 Si 0.920 3.080 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.272 1.272 23 H 0.109 0.891 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.134 0.866 27 H 0.135 0.865 28 H 0.166 0.834 29 H 0.413 0.587 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.854 0.483 -6.060 24.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.128 5.872 3 C -0.240 4.240 4 C -0.125 4.125 5 C -0.141 4.141 6 C -0.043 4.043 7 Cl -0.035 7.035 8 C -0.133 4.133 9 C 0.095 3.905 10 N -0.317 5.317 11 C 0.321 3.679 12 O -0.361 6.361 13 C -0.305 4.305 14 S 0.172 5.828 15 C -0.686 4.686 16 H 0.092 0.908 17 C -0.135 4.135 18 N -0.502 5.502 19 Si 0.746 3.254 20 H -0.202 1.202 21 H -0.207 1.207 22 H -0.196 1.196 23 H 0.128 0.872 24 H 0.105 0.895 25 H 0.104 0.896 26 H 0.152 0.848 27 H 0.153 0.847 28 H 0.184 0.816 29 H 0.251 0.749 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.625 1.410 -5.091 23.234 hybrid contribution -0.369 -1.321 -0.917 1.650 sum -22.994 0.089 -6.009 23.766 Atomic orbital electron populations 1.23688 0.94361 1.07282 1.05770 1.85393 1.06944 1.02015 1.92802 1.21469 0.94607 0.97605 1.10287 1.20828 0.97950 0.91923 1.01780 1.20838 0.94692 0.95775 1.02765 1.20734 0.93972 0.85470 1.04122 1.98378 1.94702 1.13583 1.96791 1.21346 1.01541 0.89901 1.00554 1.17104 0.85746 0.89044 0.98576 1.43809 1.10312 1.15162 1.62445 1.20638 0.82347 0.88552 0.76345 1.90690 1.82052 1.23471 1.39906 1.23562 0.99275 1.01363 1.06293 1.85424 0.97521 1.24059 1.75758 1.22855 0.97018 1.03267 1.45416 0.90768 1.24994 0.97460 0.96641 0.94408 1.70012 1.17967 1.25608 1.36601 0.86151 0.79992 0.81167 0.78107 1.20225 1.20726 1.19637 0.87221 0.89543 0.89613 0.84796 0.84690 0.81642 0.74950 0.88588 0.88511 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 9.15 101.05 0.92 0.15 16 2 S -0.11 -1.06 21.27 -107.50 -2.29 -3.35 16 3 C -0.12 -1.43 6.12 -38.91 -0.24 -1.67 16 4 C -0.10 -0.97 9.36 -39.40 -0.37 -1.34 16 5 C -0.12 -1.23 9.82 -39.54 -0.39 -1.62 16 6 C -0.01 -0.17 6.32 -39.49 -0.25 -0.42 16 7 Cl -0.06 -0.78 28.95 -51.86 -1.50 -2.29 16 8 C -0.11 -1.66 8.50 -39.39 -0.33 -2.00 16 9 C 0.20 2.79 6.44 -83.44 -0.54 2.25 16 10 N -0.67 -9.65 5.17 -9.71 -0.05 -9.70 16 11 C 0.53 9.71 7.66 -10.99 -0.08 9.63 16 12 O -0.49 -10.50 13.03 5.54 0.07 -10.43 16 13 C -0.15 -3.00 6.16 36.00 0.22 -2.78 16 14 S -0.05 -1.43 20.57 -107.50 -2.21 -3.64 16 15 C -0.54 -15.00 9.50 30.94 0.29 -14.71 16 16 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 17 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 18 N -0.87 -25.79 13.22 55.49 0.73 -25.06 16 19 Si 0.92 21.13 29.55 -169.99 -5.02 16.10 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 23 H 0.11 0.45 8.14 -51.92 -0.42 0.02 16 24 H 0.09 0.42 7.76 -51.93 -0.40 0.02 16 25 H 0.08 0.38 7.74 -51.93 -0.40 -0.02 16 26 H 0.13 0.89 5.88 -52.48 -0.31 0.58 16 27 H 0.14 1.06 8.06 -52.48 -0.42 0.63 16 28 H 0.17 2.87 5.79 -52.49 -0.30 2.57 16 29 H 0.41 4.91 7.64 -40.82 -0.31 4.60 16 30 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 31 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 32 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 321.01 15.07 4.84 4.84 Total: -1.00 -32.61 321.01 -9.25 -41.86 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -2.96 Total: 2.17 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -0.86 Total: -10.51 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.68 Total: -34.76 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.07 Total: -10.43 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -2.49 SS G_CDS: -4.50 Total: -6.98 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.50 Total: -2.29 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.61 -9.25 -41.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049305794.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.959 kcal (2) G-P(sol) polarization free energy of solvation -32.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds