Wall clock time and date at job start Tue Mar 31 2020 11:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.76205 * 102.99914 * 2 1 4 4 C 1.38772 * 120.08974 * 359.72334 * 3 2 1 5 5 C 1.38199 * 120.00150 * 180.25160 * 4 3 2 6 6 C 1.38392 * 120.18678 * 0.04720 * 5 4 3 7 7 Cl 1.73607 * 119.90979 * 179.97438 * 6 5 4 8 8 C 1.38343 * 120.18560 * 359.95474 * 6 5 4 9 9 C 1.38653 * 119.99543 * 0.02562 * 8 6 5 10 10 N 1.40130 * 120.09570 * 179.97438 * 9 8 6 11 11 C 1.34783 * 120.00040 * 24.82016 * 10 9 8 12 12 O 1.21301 * 119.99736 * 5.52534 * 11 10 9 13 13 C 1.50694 * 120.00009 * 185.52979 * 11 10 9 14 14 S 1.81008 * 109.46981 * 179.97438 * 13 11 10 15 15 C 1.76202 * 99.99726 * 180.02562 * 14 13 11 16 16 H 1.07992 * 120.00396 * 359.97438 * 15 14 13 17 17 C 1.38802 * 119.99514 * 180.02562 * 15 14 13 18 18 N 1.31630 * 119.99954 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99722 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47280 * 89.99731 * 19 17 15 21 21 H 1.48498 * 109.46735 * 209.99444 * 19 17 15 22 22 H 1.48495 * 109.46957 * 329.99453 * 19 17 15 23 23 H 1.09005 * 109.46876 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47177 * 299.99366 * 1 2 3 25 25 H 1.08998 * 109.47566 * 60.00289 * 1 2 3 26 26 H 1.08006 * 120.00042 * 0.25357 * 4 3 2 27 27 H 1.08005 * 119.90674 * 180.02562 * 5 4 3 28 28 H 1.07995 * 120.00494 * 180.02562 * 8 6 5 29 29 H 0.96999 * 120.00087 * 204.82583 * 10 9 8 30 30 H 1.08997 * 109.47270 * 299.99906 * 13 11 10 31 31 H 1.09000 * 109.47439 * 59.99691 * 13 11 10 32 32 H 0.97005 * 119.99646 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1969 2.6649 -0.0058 5 6 1.5098 4.0110 -0.0110 6 6 2.8326 4.4179 -0.0115 7 17 3.2175 6.1107 -0.0188 8 6 3.8490 3.4794 -0.0058 9 6 3.5437 2.1269 -0.0001 10 7 4.5716 1.1746 0.0051 11 6 5.7855 1.4958 0.4949 12 8 5.9608 2.5742 1.0221 13 6 6.9249 0.5155 0.3875 14 16 8.4111 1.2340 1.1301 15 6 9.5504 -0.0852 0.8721 16 1 9.2263 -0.9900 0.3797 17 6 10.8641 0.0383 1.3028 18 7 11.2589 1.1410 1.9035 19 14 12.0718 -1.3604 1.0299 20 1 12.7464 -1.1833 -0.2811 21 1 13.0871 -1.3562 2.1136 22 1 11.3419 -2.6536 1.0404 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 0.1635 2.3507 -0.0062 27 1 0.7199 4.7475 -0.0151 28 1 4.8802 3.8002 -0.0058 29 1 4.4096 0.2841 -0.3438 30 1 6.6641 -0.4036 0.9122 31 1 7.1151 0.2929 -0.6624 32 1 12.1771 1.2274 2.2041 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049305794.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:20 Heat of formation + Delta-G solvation = -35.055123 kcal Electronic energy + Delta-G solvation = -18536.787455 eV Core-core repulsion = 15353.921240 eV Total energy + Delta-G solvation = -3182.866215 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 317.005 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.72464 -39.65124 -37.55241 -35.93214 -34.59365 -32.37533 -31.91749 -29.74211 -29.66852 -27.67100 -24.46930 -23.89220 -21.80987 -20.01411 -19.30341 -18.35224 -17.97997 -16.89399 -16.87986 -16.78690 -16.17807 -15.98235 -15.39966 -15.17716 -15.04366 -14.85616 -14.49434 -14.28892 -13.81402 -13.52238 -13.38560 -13.17392 -13.05747 -12.89655 -12.75571 -12.62908 -12.03651 -11.77039 -11.63421 -11.26865 -11.14863 -11.01196 -10.52465 -10.32089 -9.54511 -8.69182 -8.35751 -8.34205 -6.14258 -0.17047 0.07948 0.41506 1.03559 1.21597 1.37659 1.42868 1.43789 1.45257 1.55863 2.02714 2.25507 2.45264 2.99001 3.23581 3.60045 3.73954 4.00408 4.13927 4.17693 4.21656 4.32999 4.34007 4.43081 4.55577 4.76655 4.91535 4.95291 5.14264 5.16564 5.41730 5.62931 6.15366 6.19273 6.90578 7.05929 8.73402 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.016023 B = 0.003280 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.060781 B = 8534.105802 C =10180.904571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.137 6.137 3 C -0.118 4.118 4 C -0.092 4.092 5 C -0.105 4.105 6 C -0.028 4.028 7 Cl -0.068 7.068 8 C -0.134 4.134 9 C 0.167 3.833 10 N -0.653 5.653 11 C 0.536 3.464 12 O -0.530 6.530 13 C -0.130 4.130 14 S -0.141 6.141 15 C -0.548 4.548 16 H 0.085 0.915 17 C 0.015 3.985 18 N -0.911 5.911 19 Si 0.999 3.001 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.257 1.257 23 H 0.127 0.873 24 H 0.098 0.902 25 H 0.102 0.898 26 H 0.175 0.825 27 H 0.167 0.833 28 H 0.132 0.868 29 H 0.426 0.574 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.867 -1.555 -6.990 27.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.104 5.896 3 C -0.233 4.233 4 C -0.116 4.116 5 C -0.126 4.126 6 C -0.058 4.058 7 Cl -0.039 7.039 8 C -0.156 4.156 9 C 0.066 3.934 10 N -0.299 5.299 11 C 0.324 3.676 12 O -0.406 6.406 13 C -0.281 4.281 14 S 0.086 5.914 15 C -0.696 4.696 16 H 0.103 0.897 17 C -0.190 4.190 18 N -0.547 5.547 19 Si 0.820 3.180 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.181 1.181 23 H 0.145 0.855 24 H 0.117 0.883 25 H 0.121 0.879 26 H 0.192 0.808 27 H 0.184 0.816 28 H 0.150 0.850 29 H 0.265 0.735 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -25.693 -0.655 -6.046 26.403 hybrid contribution 0.305 -0.693 -0.669 1.010 sum -25.388 -1.348 -6.716 26.296 Atomic orbital electron populations 1.23871 0.90229 1.08963 1.07208 1.85553 1.11442 1.00281 1.92334 1.21686 0.93686 0.99445 1.08501 1.21325 0.99351 0.91122 0.99780 1.21234 0.94039 0.96965 1.00365 1.20861 0.94732 0.84991 1.05177 1.98370 1.94900 1.13750 1.96868 1.21150 1.00644 0.91226 1.02616 1.17230 0.86691 0.88476 1.01017 1.43415 1.09192 1.15869 1.61445 1.20348 0.83244 0.87604 0.76391 1.90692 1.82868 1.24907 1.42086 1.23370 0.96246 1.01647 1.06833 1.85586 1.01972 1.26435 1.77383 1.23212 0.97541 1.03458 1.45345 0.89706 1.26118 0.99595 0.99487 0.93824 1.70178 1.18535 1.28078 1.37932 0.84952 0.77112 0.77746 0.78175 1.19322 1.20363 1.18105 0.85453 0.88311 0.87879 0.80797 0.81598 0.85021 0.73491 0.86576 0.86513 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.84 9.15 113.37 1.04 0.19 16 2 S -0.14 -2.21 21.27 -56.49 -1.20 -3.41 16 3 C -0.12 -2.46 6.12 22.70 0.14 -2.32 16 4 C -0.09 -1.43 9.36 22.39 0.21 -1.22 16 5 C -0.11 -1.88 9.82 22.30 0.22 -1.66 16 6 C -0.03 -0.71 6.32 22.33 0.14 -0.56 16 7 Cl -0.07 -1.69 28.95 -2.72 -0.08 -1.77 16 8 C -0.13 -4.17 8.50 22.39 0.19 -3.98 16 9 C 0.17 4.69 6.44 38.22 0.25 4.93 16 10 N -0.65 -18.80 5.17 -303.01 -1.57 -20.37 16 11 C 0.54 20.15 7.66 87.65 0.67 20.82 16 12 O -0.53 -24.20 13.03 -3.10 -0.04 -24.24 16 13 C -0.13 -5.10 6.16 71.23 0.44 -4.66 16 14 S -0.14 -7.72 20.57 -56.49 -1.16 -8.89 16 15 C -0.55 -30.97 9.50 67.95 0.65 -30.32 16 16 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 17 C 0.01 0.83 5.49 84.86 0.47 1.30 16 18 N -0.91 -55.73 13.22 21.65 0.29 -55.44 16 19 Si 1.00 43.34 29.55 68.60 2.03 45.36 16 20 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 21 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 22 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 23 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 24 H 0.10 0.45 7.76 -2.39 -0.02 0.43 16 25 H 0.10 0.36 7.74 -2.39 -0.02 0.34 16 26 H 0.17 1.31 5.88 -2.91 -0.02 1.29 16 27 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 28 H 0.13 5.00 5.79 -2.91 -0.02 4.98 16 29 H 0.43 9.76 7.64 -92.71 -0.71 9.06 16 30 H 0.12 4.07 8.14 -2.40 -0.02 4.05 16 31 H 0.12 4.09 8.14 -2.40 -0.02 4.07 16 32 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 Total: -1.00 -75.08 321.01 3.13 -71.94 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.47 Total: 14.29 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: 4.40 Total: -17.48 kcal Atomic # 7 Polarization: -74.53 SS G_CDS: -1.28 Total: -75.81 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.04 Total: -24.24 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: -9.93 SS G_CDS: -2.36 Total: -12.29 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -0.08 Total: -1.77 kcal Total: -75.08 3.13 -71.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049305794.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.888 kcal (2) G-P(sol) polarization free energy of solvation -75.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds