Wall clock time and date at job start Tue Mar 31 2020 12:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.46936 * 2 1 4 4 H 1.08998 * 109.47215 * 184.82771 * 3 2 1 5 5 C 1.50700 * 109.47471 * 304.83197 * 3 2 1 6 6 H 1.07998 * 120.00362 * 120.27520 * 5 3 2 7 7 C 1.37884 * 119.99771 * 300.00097 * 5 3 2 8 8 N 1.31517 * 119.99942 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00149 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47139 * 359.97438 * 9 7 5 11 11 H 1.48489 * 109.47513 * 119.99757 * 9 7 5 12 12 H 1.48500 * 109.46990 * 240.00353 * 9 7 5 13 13 N 1.46907 * 109.47178 * 64.83068 * 3 2 1 14 14 C 1.46904 * 110.99762 * 86.13069 * 13 3 2 15 15 H 1.08995 * 109.46937 * 324.03077 * 14 13 3 16 16 C 1.52997 * 109.46940 * 84.03071 * 14 13 3 17 17 C 1.50699 * 109.46643 * 204.02889 * 14 13 3 18 18 C 1.33362 * 125.19354 * 139.99670 * 17 14 13 19 19 C 1.38446 * 114.93114 * 180.02562 * 18 17 14 20 20 C 1.33476 * 114.89410 * 0.02562 * 19 18 17 21 21 Br 1.89104 * 125.20538 * 179.97438 * 20 19 18 22 22 S 1.75882 * 125.19369 * 319.69567 * 17 14 13 23 23 H 1.09002 * 109.47306 * 302.89224 * 1 2 3 24 24 H 1.09000 * 109.47479 * 62.89668 * 1 2 3 25 25 H 1.09000 * 109.47143 * 182.89309 * 1 2 3 26 26 H 1.08997 * 109.47155 * 240.00246 * 2 1 3 27 27 H 1.08993 * 109.47328 * 120.00041 * 2 1 3 28 28 H 0.96998 * 119.99954 * 180.02562 * 8 7 5 29 29 H 1.00899 * 110.99701 * 322.17645 * 13 3 2 30 30 H 1.09006 * 109.46436 * 179.97438 * 16 14 13 31 31 H 1.08997 * 109.47188 * 299.99670 * 16 14 13 32 32 H 1.08995 * 109.47301 * 60.00228 * 16 14 13 33 33 H 1.08004 * 122.53140 * 0.02567 * 18 17 14 34 34 H 1.08007 * 122.55046 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1265 1.4437 -0.0865 5 6 1.4423 2.1866 -1.1662 6 1 0.8358 3.0635 -0.9938 7 6 1.6744 1.7513 -2.4538 8 7 2.4177 0.6869 -2.6641 9 14 0.9342 2.6740 -3.8995 10 1 0.1451 3.8280 -3.3985 11 1 2.0221 3.1642 -4.7833 12 1 0.0463 1.7632 -4.6658 13 7 1.6478 2.1005 1.2535 14 6 2.6334 1.8456 2.3126 15 1 3.0247 0.8336 2.2088 16 6 3.7808 2.8507 2.1940 17 6 1.9733 1.9935 3.6592 18 6 2.1922 1.2062 4.7131 19 6 1.4693 1.5347 5.8472 20 6 0.6624 2.5896 5.7132 21 35 -0.4531 3.2883 7.0709 22 16 0.8021 3.2353 4.0831 23 1 -0.3634 0.5581 0.8629 24 1 -0.3634 0.4682 -0.9148 25 1 -0.3633 -1.0263 0.0519 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.5813 0.3809 -3.5699 29 1 0.7251 1.8105 1.5409 30 1 4.5119 2.6618 2.9801 31 1 4.2583 2.7438 1.2200 32 1 3.3896 3.8627 2.2977 33 1 2.8813 0.3751 4.6841 34 1 1.5513 0.9792 6.7698 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183951.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:28 Heat of formation + Delta-G solvation = 25.709400 kcal Electronic energy + Delta-G solvation = -16735.688498 eV Core-core repulsion = 14034.109768 eV Total energy + Delta-G solvation = -2701.578730 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.31420 -36.68202 -33.70668 -31.76392 -31.12868 -28.82457 -27.57421 -26.11717 -23.95522 -23.24495 -21.39864 -19.33216 -18.95375 -17.18343 -16.09757 -15.42957 -14.92942 -14.66161 -13.91930 -13.67881 -12.96806 -12.90149 -12.80862 -12.63278 -12.30478 -12.10562 -11.70654 -11.40692 -11.19614 -10.95437 -10.82401 -10.70991 -10.55087 -10.53041 -10.31486 -9.97521 -9.85390 -9.59835 -9.01829 -8.47644 -8.41552 -8.36157 -7.37074 -6.00240 -4.01549 0.84366 1.11186 1.83708 2.05246 2.65032 3.30326 3.38924 3.43856 4.42045 4.79683 5.15299 5.31366 5.32219 5.43065 5.74767 5.81276 5.93072 6.09645 6.24228 6.29172 6.33913 6.34767 6.43109 6.53104 6.68847 6.87027 7.20908 7.22713 7.45057 7.65882 7.85860 8.22525 8.43467 8.54809 9.04216 9.62315 11.06929 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.027637 B = 0.003389 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.896263 B = 8260.258804 C = 8515.181470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.146 4.146 3 C 0.216 3.784 4 H 0.037 0.963 5 C -0.487 4.487 6 H 0.063 0.937 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.679 5.679 14 C 0.145 3.855 15 H 0.058 0.942 16 C -0.132 4.132 17 C -0.143 4.143 18 C -0.156 4.156 19 C -0.086 4.086 20 C -0.232 4.232 21 Br -0.007 7.007 22 S 0.199 5.801 23 H 0.029 0.971 24 H 0.065 0.935 25 H 0.023 0.977 26 H 0.094 0.906 27 H 0.010 0.990 28 H 0.258 0.742 29 H 0.329 0.671 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.144 0.856 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.523 2.322 18.905 19.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.186 4.186 3 C 0.108 3.892 4 H 0.054 0.946 5 C -0.526 4.526 6 H 0.081 0.919 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.311 5.311 14 C 0.033 3.967 15 H 0.075 0.925 16 C -0.190 4.190 17 C -0.262 4.262 18 C -0.187 4.187 19 C -0.121 4.121 20 C -0.428 4.428 21 Br 0.077 6.923 22 S 0.463 5.537 23 H 0.048 0.952 24 H 0.084 0.916 25 H 0.042 0.958 26 H 0.113 0.887 27 H 0.029 0.971 28 H 0.068 0.932 29 H 0.149 0.851 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.161 0.839 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.275 4.323 18.304 19.091 hybrid contribution 0.338 -2.003 -0.106 2.034 sum -2.937 2.321 18.198 18.579 Atomic orbital electron populations 1.21560 0.97659 0.97990 1.01304 1.22115 0.95052 1.01083 1.00309 1.19263 0.96124 0.88566 0.85218 0.94560 1.21072 1.30668 1.11357 0.89498 0.91922 1.24902 0.95506 0.95166 0.98741 1.69884 1.38913 1.24000 1.20789 0.86522 0.78936 0.79894 0.82566 1.19730 1.21209 1.21263 1.61119 1.03426 1.63241 1.03341 1.20128 0.93448 0.98457 0.84633 0.92476 1.21794 0.96385 0.99076 1.01772 1.25238 1.01551 0.98865 1.00580 1.20011 1.03905 1.02831 0.91926 1.20090 0.95812 0.96096 1.00060 1.26183 1.09155 1.07040 1.00449 1.96641 1.63872 1.85142 1.46668 1.84677 1.39508 1.29557 0.99942 0.95175 0.91563 0.95835 0.88747 0.97131 0.93164 0.85119 0.93370 0.91276 0.92232 0.83873 0.84082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.39 37.16 0.35 -2.33 16 2 C -0.15 -3.31 5.50 -26.73 -0.15 -3.45 16 3 C 0.22 5.07 2.13 -68.86 -0.15 4.92 16 4 H 0.04 0.94 7.04 -51.93 -0.37 0.57 16 5 C -0.49 -12.73 7.41 -34.44 -0.26 -12.99 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.53 5.27 -17.82 -0.09 1.43 16 8 N -0.90 -24.64 11.37 55.43 0.63 -24.01 16 9 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.68 -13.56 5.84 -102.17 -0.60 -14.16 16 14 C 0.15 2.46 2.85 -68.86 -0.20 2.27 16 15 H 0.06 1.00 7.16 -51.93 -0.37 0.63 16 16 C -0.13 -2.12 9.37 37.16 0.35 -1.77 16 17 C -0.14 -2.12 5.14 -36.01 -0.19 -2.30 16 18 C -0.16 -2.03 10.04 -41.21 -0.41 -2.45 16 19 C -0.09 -1.05 10.11 -41.17 -0.42 -1.46 16 20 C -0.23 -2.99 6.97 29.07 0.20 -2.78 16 21 Br -0.01 -0.08 34.07 -68.01 -2.32 -2.39 16 22 S 0.20 2.83 22.92 -107.50 -2.46 0.37 16 23 H 0.03 0.58 6.32 -51.93 -0.33 0.25 16 24 H 0.07 1.52 7.17 -51.93 -0.37 1.15 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.09 2.41 6.21 -51.93 -0.32 2.09 16 27 H 0.01 0.21 7.45 -51.93 -0.39 -0.17 16 28 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.33 6.49 5.97 -39.29 -0.23 6.25 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 1.21 7.37 -51.93 -0.38 0.83 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.14 1.63 8.06 -52.48 -0.42 1.21 16 34 H 0.14 1.41 8.06 -52.48 -0.42 0.98 16 LS Contribution 310.60 15.07 4.68 4.68 Total: -1.00 -26.28 310.60 -10.47 -36.75 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -4.42 Total: 3.72 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: -0.95 Total: -20.92 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.03 Total: -38.16 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -2.46 Total: 0.37 kcal Atomic # 35 Polarization: -0.08 SS G_CDS: -2.32 Total: -2.39 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -26.28 -10.47 -36.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183951.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.455 kcal (2) G-P(sol) polarization free energy of solvation -26.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds