Wall clock time and date at job start Tue Mar 31 2020 12:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.46936 * 2 1 4 4 H 1.08998 * 109.47215 * 184.82771 * 3 2 1 5 5 C 1.50700 * 109.47471 * 304.83197 * 3 2 1 6 6 H 1.07998 * 120.00362 * 120.27520 * 5 3 2 7 7 C 1.37884 * 119.99771 * 300.00097 * 5 3 2 8 8 N 1.31517 * 119.99942 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00149 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47139 * 359.97438 * 9 7 5 11 11 H 1.48489 * 109.47513 * 119.99757 * 9 7 5 12 12 H 1.48500 * 109.46990 * 240.00353 * 9 7 5 13 13 N 1.46907 * 109.47178 * 64.83068 * 3 2 1 14 14 C 1.46904 * 110.99762 * 86.13069 * 13 3 2 15 15 H 1.08995 * 109.46937 * 324.03077 * 14 13 3 16 16 C 1.52997 * 109.46940 * 84.03071 * 14 13 3 17 17 C 1.50699 * 109.46643 * 204.02889 * 14 13 3 18 18 C 1.33362 * 125.19354 * 139.99670 * 17 14 13 19 19 C 1.38446 * 114.93114 * 180.02562 * 18 17 14 20 20 C 1.33476 * 114.89410 * 0.02562 * 19 18 17 21 21 Br 1.89104 * 125.20538 * 179.97438 * 20 19 18 22 22 S 1.75882 * 125.19369 * 319.69567 * 17 14 13 23 23 H 1.09002 * 109.47306 * 302.89224 * 1 2 3 24 24 H 1.09000 * 109.47479 * 62.89668 * 1 2 3 25 25 H 1.09000 * 109.47143 * 182.89309 * 1 2 3 26 26 H 1.08997 * 109.47155 * 240.00246 * 2 1 3 27 27 H 1.08993 * 109.47328 * 120.00041 * 2 1 3 28 28 H 0.96998 * 119.99954 * 180.02562 * 8 7 5 29 29 H 1.00899 * 110.99701 * 322.17645 * 13 3 2 30 30 H 1.09006 * 109.46436 * 179.97438 * 16 14 13 31 31 H 1.08997 * 109.47188 * 299.99670 * 16 14 13 32 32 H 1.08995 * 109.47301 * 60.00228 * 16 14 13 33 33 H 1.08004 * 122.53140 * 0.02567 * 18 17 14 34 34 H 1.08007 * 122.55046 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1265 1.4437 -0.0865 5 6 1.4423 2.1866 -1.1662 6 1 0.8358 3.0635 -0.9938 7 6 1.6744 1.7513 -2.4538 8 7 2.4177 0.6869 -2.6641 9 14 0.9342 2.6740 -3.8995 10 1 0.1451 3.8280 -3.3985 11 1 2.0221 3.1642 -4.7833 12 1 0.0463 1.7632 -4.6658 13 7 1.6478 2.1005 1.2535 14 6 2.6334 1.8456 2.3126 15 1 3.0247 0.8336 2.2088 16 6 3.7808 2.8507 2.1940 17 6 1.9733 1.9935 3.6592 18 6 2.1922 1.2062 4.7131 19 6 1.4693 1.5347 5.8472 20 6 0.6624 2.5896 5.7132 21 35 -0.4531 3.2883 7.0709 22 16 0.8021 3.2353 4.0831 23 1 -0.3634 0.5581 0.8629 24 1 -0.3634 0.4682 -0.9148 25 1 -0.3633 -1.0263 0.0519 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.5813 0.3809 -3.5699 29 1 0.7251 1.8105 1.5409 30 1 4.5119 2.6618 2.9801 31 1 4.2583 2.7438 1.2200 32 1 3.3896 3.8627 2.2977 33 1 2.8813 0.3751 4.6841 34 1 1.5513 0.9792 6.7698 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183951.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:25 Heat of formation + Delta-G solvation = 12.308045 kcal Electronic energy + Delta-G solvation = -16736.269625 eV Core-core repulsion = 14034.109768 eV Total energy + Delta-G solvation = -2702.159857 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -39.54355 -38.14661 -35.31757 -33.35488 -32.44861 -30.34176 -28.72515 -27.98245 -25.43693 -24.72156 -22.76104 -20.92113 -20.20383 -18.54918 -17.79005 -16.86420 -16.48911 -16.21483 -15.36453 -15.08289 -14.58868 -14.36410 -14.14477 -13.91836 -13.79477 -13.36548 -13.09249 -12.96884 -12.81688 -12.55144 -12.39299 -12.38207 -11.92970 -11.75742 -11.67936 -11.60054 -11.41200 -11.25009 -10.94180 -10.40744 -9.53274 -9.47432 -9.00705 -8.04021 -6.11137 -0.20303 0.10005 0.82756 0.98945 1.42127 1.45937 1.56155 1.64830 2.47159 3.25676 3.50089 3.75590 4.32527 4.38284 4.45088 4.50635 4.55800 4.61537 4.74394 4.87096 4.91381 5.00885 5.11509 5.15673 5.32443 5.35515 5.42775 5.44757 5.67923 5.76216 5.86562 6.33805 6.66366 6.79977 7.00158 7.56350 9.01589 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.027637 B = 0.003389 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.896263 B = 8260.258804 C = 8515.181470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.139 4.139 3 C 0.224 3.776 4 H 0.007 0.993 5 C -0.496 4.496 6 H 0.051 0.949 7 C 0.016 3.984 8 N -0.919 5.919 9 Si 0.947 3.053 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.283 1.283 13 N -0.681 5.681 14 C 0.149 3.851 15 H 0.052 0.948 16 C -0.127 4.127 17 C -0.163 4.163 18 C -0.141 4.141 19 C -0.083 4.083 20 C -0.231 4.231 21 Br 0.010 6.990 22 S 0.171 5.829 23 H 0.045 0.955 24 H 0.041 0.959 25 H 0.043 0.957 26 H 0.064 0.936 27 H 0.026 0.974 28 H 0.258 0.742 29 H 0.331 0.669 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.162 0.838 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.076 2.124 20.697 21.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.179 4.179 3 C 0.116 3.884 4 H 0.025 0.975 5 C -0.535 4.535 6 H 0.069 0.931 7 C -0.182 4.182 8 N -0.560 5.560 9 Si 0.774 3.226 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.209 1.209 13 N -0.313 5.313 14 C 0.037 3.963 15 H 0.070 0.930 16 C -0.185 4.185 17 C -0.283 4.283 18 C -0.172 4.172 19 C -0.117 4.117 20 C -0.427 4.427 21 Br 0.094 6.906 22 S 0.435 5.565 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.045 0.955 28 H 0.067 0.933 29 H 0.151 0.849 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.180 0.820 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -3.833 4.136 20.109 20.885 hybrid contribution 0.512 -1.932 -0.538 2.069 sum -3.321 2.204 19.572 19.974 Atomic orbital electron populations 1.21448 0.96224 0.99267 1.00707 1.21963 0.96254 1.00163 0.99511 1.18969 0.94074 0.89155 0.86250 0.97497 1.21284 1.30342 1.11089 0.90762 0.93104 1.25522 0.95940 0.95865 1.00879 1.70002 1.39886 1.25043 1.21079 0.85670 0.78189 0.78855 0.79895 1.19514 1.21127 1.20940 1.60967 1.04242 1.62898 1.03229 1.20034 0.92972 0.98267 0.85005 0.93037 1.21741 0.96641 0.98749 1.01362 1.24931 1.02983 1.00338 1.00027 1.20288 1.03237 1.02308 0.91383 1.20361 0.94878 0.95780 1.00701 1.26343 1.09400 1.07038 0.99967 1.96666 1.63403 1.85045 1.45497 1.84751 1.39992 1.30141 1.01609 0.93653 0.93961 0.93824 0.91793 0.95537 0.93271 0.84897 0.90744 0.93625 0.92602 0.82007 0.81406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.90 9.39 71.98 0.68 -4.22 16 2 C -0.14 -6.32 5.50 30.59 0.17 -6.15 16 3 C 0.22 10.69 2.13 44.17 0.09 10.79 16 4 H 0.01 0.38 7.04 -2.39 -0.02 0.36 16 5 C -0.50 -26.36 7.41 25.60 0.19 -26.17 16 6 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 7 C 0.02 0.87 5.27 84.66 0.45 1.31 16 8 N -0.92 -51.47 11.37 21.45 0.24 -51.23 16 9 Si 0.95 43.41 29.54 68.60 2.03 45.44 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 N -0.68 -27.25 5.84 -477.16 -2.79 -30.03 16 14 C 0.15 4.95 2.85 44.17 0.13 5.08 16 15 H 0.05 1.77 7.16 -2.39 -0.02 1.76 16 16 C -0.13 -4.03 9.37 71.98 0.67 -3.36 16 17 C -0.16 -4.58 5.14 24.58 0.13 -4.46 16 18 C -0.14 -3.27 10.04 21.22 0.21 -3.06 16 19 C -0.08 -1.75 10.11 21.24 0.21 -1.54 16 20 C -0.23 -5.40 6.97 66.74 0.47 -4.93 16 21 Br 0.01 0.21 34.07 -20.37 -0.69 -0.49 16 22 S 0.17 4.66 22.92 -56.49 -1.29 3.37 16 23 H 0.04 1.70 6.32 -2.39 -0.02 1.68 16 24 H 0.04 1.92 7.17 -2.39 -0.02 1.90 16 25 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.06 3.32 6.21 -2.39 -0.01 3.30 16 27 H 0.03 1.09 7.45 -2.39 -0.02 1.07 16 28 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 29 H 0.33 12.89 5.97 -89.69 -0.54 12.36 16 30 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 31 H 0.04 1.64 7.37 -2.39 -0.02 1.62 16 32 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 34 H 0.17 2.64 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -56.06 310.60 1.46 -54.60 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 0.57 Total: 15.05 kcal Atomic # 6 Polarization: -40.10 SS G_CDS: 3.39 Total: -36.70 kcal Atomic # 7 Polarization: -78.72 SS G_CDS: -2.54 Total: -81.26 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: 4.66 SS G_CDS: -1.29 Total: 3.37 kcal Atomic # 35 Polarization: 0.21 SS G_CDS: -0.69 Total: -0.49 kcal Total: -56.06 1.46 -54.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183951.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.906 kcal (2) G-P(sol) polarization free energy of solvation -56.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds