Wall clock time and date at job start Tue Mar 31 2020 10:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46905 * 110.99995 * 2 1 4 4 C 1.52997 * 109.47053 * 66.04702 * 3 2 1 5 5 C 1.53001 * 109.47019 * 179.97438 * 4 3 2 6 6 C 1.50693 * 109.47092 * 180.02562 * 5 4 3 7 7 H 1.08001 * 120.00195 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00120 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99860 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00074 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47044 * 60.00515 * 10 8 6 12 12 H 1.48505 * 109.46893 * 179.97438 * 10 8 6 13 13 H 1.48492 * 109.47435 * 300.00328 * 10 8 6 14 14 C 1.46897 * 110.99814 * 236.04544 * 2 1 3 15 15 C 1.50694 * 109.47330 * 293.95439 * 14 2 1 16 16 C 1.38286 * 119.92597 * 269.72654 * 15 14 2 17 17 C 1.38110 * 120.07347 * 179.72493 * 16 15 14 18 18 C 1.38906 * 119.92413 * 0.54584 * 17 16 15 19 19 N 1.39678 * 120.07227 * 179.70626 * 18 17 16 20 20 C 1.46852 * 110.99926 * 124.23444 * 19 18 17 21 21 C 1.53031 * 109.52106 * 174.15673 * 20 19 18 22 22 C 1.53125 * 109.27706 * 59.18067 * 21 20 19 23 23 C 1.53113 * 109.16251 * 302.34241 * 22 21 20 24 24 C 1.46839 * 111.00033 * 0.02562 * 19 18 17 25 25 C 1.38911 * 119.85079 * 359.73014 * 18 17 16 26 26 C 1.38104 * 119.92729 * 359.97438 * 25 18 17 27 27 H 1.08992 * 109.47459 * 183.95199 * 1 2 3 28 28 H 1.09004 * 109.47040 * 303.95350 * 1 2 3 29 29 H 1.09000 * 109.47033 * 63.95302 * 1 2 3 30 30 H 1.09002 * 109.46783 * 186.04686 * 3 2 1 31 31 H 1.09005 * 109.46676 * 306.04728 * 3 2 1 32 32 H 1.09002 * 109.47313 * 299.99660 * 4 3 2 33 33 H 1.08994 * 109.47205 * 59.99990 * 4 3 2 34 34 H 1.09002 * 109.46818 * 299.99985 * 5 4 3 35 35 H 1.08994 * 109.47122 * 59.99961 * 5 4 3 36 36 H 0.97005 * 120.00268 * 180.02562 * 9 8 6 37 37 H 1.09009 * 109.47296 * 53.95365 * 14 2 1 38 38 H 1.09002 * 109.47055 * 173.95064 * 14 2 1 39 39 H 1.07997 * 119.96072 * 359.97438 * 16 15 14 40 40 H 1.07996 * 120.03467 * 180.27543 * 17 16 15 41 41 H 1.08997 * 109.45947 * 294.17645 * 20 19 18 42 42 H 1.09000 * 109.46017 * 54.13911 * 20 19 18 43 43 H 1.08995 * 109.50847 * 299.23767 * 21 20 19 44 44 H 1.09004 * 109.50084 * 179.11576 * 21 20 19 45 45 H 1.08997 * 109.52096 * 182.43306 * 22 21 20 46 46 H 1.08999 * 109.52245 * 62.24946 * 22 21 20 47 47 H 1.09001 * 109.50116 * 297.71449 * 23 22 21 48 48 H 1.08996 * 109.50536 * 177.59575 * 23 22 21 49 49 H 1.09001 * 109.46941 * 305.85790 * 24 19 18 50 50 H 1.09000 * 109.46325 * 65.82380 * 24 19 18 51 51 H 1.08005 * 120.03560 * 180.02562 * 25 18 17 52 52 H 1.07999 * 119.96318 * 179.97438 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1804 3.4856 1.3185 6 6 1.8225 4.1611 2.6171 7 1 1.2594 3.6255 3.3672 8 6 2.2138 5.4629 2.8479 9 7 2.8989 6.1153 1.9344 10 14 1.7694 6.3004 4.4574 11 1 2.3602 5.5423 5.5895 12 1 2.3033 7.6862 4.4582 13 1 0.2923 6.3384 4.6044 14 6 1.9954 -0.7660 -1.1376 15 6 1.6369 -2.2204 -0.9729 16 6 2.4980 -3.0718 -0.3051 17 6 2.1698 -4.4041 -0.1474 18 6 0.9786 -4.8909 -0.6704 19 7 0.6465 -6.2390 -0.5181 20 6 -0.6628 -6.3885 0.1300 21 6 -1.0583 -7.8667 0.1486 22 6 0.0035 -8.6645 0.9108 23 6 1.3656 -8.4531 0.2443 24 6 1.6908 -6.9578 0.2228 25 6 0.1186 -4.0340 -1.3456 26 6 0.4500 -2.7016 -1.4944 27 1 -0.3634 -1.0251 0.0708 28 1 -0.3633 0.5740 0.8525 29 1 -0.3633 0.4513 -0.9233 30 1 3.0798 1.3444 -0.1083 31 1 1.5611 1.9274 -0.8310 32 1 0.5473 2.0845 1.4265 33 1 2.0659 1.5016 2.1491 34 1 3.2647 3.4581 1.2105 35 1 1.7465 4.0418 0.4876 36 1 3.1746 7.0310 2.0969 37 1 1.5611 -0.3872 -2.0629 38 1 3.0797 -0.6611 -1.1757 39 1 3.4262 -2.6936 0.0971 40 1 2.8407 -5.0675 0.3781 41 1 -0.6067 -6.0145 1.1522 42 1 -1.4093 -5.8197 -0.4242 43 1 -1.1279 -8.2378 -0.8738 44 1 -2.0229 -7.9791 0.6437 45 1 -0.2520 -9.7239 0.8895 46 1 0.0460 -8.3199 1.9440 47 1 1.3341 -8.8334 -0.7767 48 1 2.1328 -8.9843 0.8076 49 1 2.6538 -6.8026 -0.2639 50 1 1.7358 -6.5811 1.2447 51 1 -0.8085 -4.4093 -1.7531 52 1 -0.2179 -2.0351 -2.0197 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057626087.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:25 Heat of formation + Delta-G solvation = -0.015067 kcal Electronic energy + Delta-G solvation = -25755.319141 eV Core-core repulsion = 22331.950525 eV Total energy + Delta-G solvation = -3423.368617 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.35365 -39.57787 -38.13523 -35.77407 -34.74985 -33.24538 -32.56502 -31.34764 -30.83428 -28.65135 -27.85105 -25.95902 -24.94661 -24.66000 -23.03003 -22.60801 -21.57981 -21.47845 -20.55321 -18.48742 -18.44081 -16.85172 -16.77035 -16.50960 -16.40288 -16.06847 -15.90536 -15.61279 -15.04638 -14.99592 -14.88748 -14.79913 -14.40434 -14.28735 -14.13202 -13.88822 -13.65809 -13.37246 -13.15858 -13.04255 -12.73920 -12.70554 -12.57109 -12.51358 -12.28457 -12.19464 -12.06346 -11.89492 -11.70412 -11.42961 -11.38490 -11.34811 -11.28665 -11.08937 -10.54080 -10.51766 -9.82197 -9.26553 -8.68299 -8.19551 -6.30543 0.40588 0.51892 1.39670 1.43048 1.50976 2.40998 2.58450 2.88474 3.13116 3.26441 3.77412 3.82964 3.91092 3.99061 4.01633 4.08649 4.15696 4.19140 4.29612 4.34221 4.38647 4.49651 4.51688 4.51916 4.60170 4.63384 4.66192 4.73509 4.77099 4.78965 4.85357 4.89430 4.94057 4.95440 5.05010 5.09516 5.10175 5.16336 5.20681 5.23895 5.26868 5.37604 5.41913 5.45121 5.52488 5.74448 5.77289 5.85196 5.86406 6.08554 6.10329 6.17959 6.28494 6.37538 6.85761 7.38265 8.91972 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.023842 B = 0.001932 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.102036 B =14492.016074 C =14891.990418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.544 5.544 3 C 0.067 3.933 4 C -0.089 4.089 5 C 0.026 3.974 6 C -0.543 4.543 7 H 0.058 0.942 8 C -0.002 4.002 9 N -0.932 5.932 10 Si 0.966 3.034 11 H -0.267 1.267 12 H -0.282 1.282 13 H -0.267 1.267 14 C 0.096 3.904 15 C -0.108 4.108 16 C -0.082 4.082 17 C -0.178 4.178 18 C 0.102 3.898 19 N -0.493 5.493 20 C 0.056 3.944 21 C -0.115 4.115 22 C -0.124 4.124 23 C -0.115 4.115 24 C 0.047 3.953 25 C -0.146 4.146 26 C -0.090 4.090 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.028 0.972 30 H 0.069 0.931 31 H 0.026 0.974 32 H 0.049 0.951 33 H 0.049 0.951 34 H -0.008 1.008 35 H -0.009 1.009 36 H 0.264 0.736 37 H 0.045 0.955 38 H 0.081 0.919 39 H 0.125 0.875 40 H 0.136 0.864 41 H 0.035 0.965 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.059 0.941 47 H 0.068 0.932 48 H 0.083 0.917 49 H 0.081 0.919 50 H 0.042 0.958 51 H 0.135 0.865 52 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.348 -31.818 -6.642 33.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.268 5.268 3 C -0.060 4.060 4 C -0.127 4.127 5 C -0.012 4.012 6 C -0.581 4.581 7 H 0.076 0.924 8 C -0.199 4.199 9 N -0.573 5.573 10 Si 0.790 3.210 11 H -0.192 1.192 12 H -0.207 1.207 13 H -0.192 1.192 14 C -0.031 4.031 15 C -0.110 4.110 16 C -0.101 4.101 17 C -0.199 4.199 18 C 0.004 3.996 19 N -0.208 5.208 20 C -0.069 4.069 21 C -0.153 4.153 22 C -0.161 4.161 23 C -0.153 4.153 24 C -0.079 4.079 25 C -0.167 4.167 26 C -0.110 4.110 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.047 0.953 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.011 0.989 35 H 0.009 0.991 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.100 0.900 39 H 0.143 0.857 40 H 0.154 0.846 41 H 0.053 0.947 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.096 0.904 46 H 0.078 0.922 47 H 0.087 0.913 48 H 0.101 0.899 49 H 0.100 0.900 50 H 0.060 0.940 51 H 0.153 0.847 52 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.177 -32.180 -6.700 33.446 hybrid contribution -0.078 1.739 0.551 1.826 sum -6.255 -30.441 -6.148 31.679 Atomic orbital electron populations 1.22452 0.87180 1.02289 1.00508 1.62024 1.08583 1.13205 1.42981 1.22044 0.99628 0.87448 0.96894 1.21394 0.99719 0.95259 0.96309 1.18970 0.94719 0.92126 0.95367 1.21652 1.35024 0.98387 1.03077 0.92410 1.25996 0.94971 0.98280 1.00692 1.70090 1.39216 1.11778 1.36179 0.85497 0.78901 0.77310 0.79317 1.19230 1.20707 1.19179 1.21033 1.00512 0.90009 0.91554 1.19680 0.95783 0.94688 1.00805 1.21014 0.99440 0.92958 0.96674 1.21426 0.98981 0.96117 1.03368 1.19097 0.95119 0.88628 0.96713 1.59113 1.04666 1.07832 1.49232 1.22296 0.88986 0.98764 0.96902 1.21624 0.99178 0.92869 1.01633 1.21621 0.94605 1.00895 0.98992 1.21614 0.97948 0.93841 1.01870 1.22339 0.94508 0.94948 0.96145 1.20861 1.00808 0.93014 1.01973 1.21043 0.95833 0.95317 0.98757 0.90445 0.92076 0.95339 0.91255 0.95529 0.93207 0.93210 0.98918 0.99083 0.92772 0.93724 0.90014 0.85747 0.84622 0.94697 0.89906 0.91103 0.89925 0.90374 0.92226 0.91300 0.89887 0.90040 0.93992 0.84747 0.85244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.66 8.94 127.69 1.14 1.80 16 2 N -0.54 -16.56 4.75 -927.02 -4.41 -20.96 16 3 C 0.07 2.41 4.96 86.30 0.43 2.84 16 4 C -0.09 -3.84 5.08 30.59 0.16 -3.68 16 5 C 0.03 1.40 4.97 29.85 0.15 1.55 16 6 C -0.54 -31.82 9.11 25.60 0.23 -31.58 16 7 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 8 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 9 N -0.93 -57.63 13.29 21.45 0.28 -57.34 16 10 Si 0.97 45.04 29.54 68.60 2.03 47.07 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 13 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 14 C 0.10 2.44 5.12 85.56 0.44 2.88 16 15 C -0.11 -2.55 4.89 -19.84 -0.10 -2.64 16 16 C -0.08 -1.87 9.69 22.25 0.22 -1.66 16 17 C -0.18 -3.70 8.82 22.40 0.20 -3.50 16 18 C 0.10 2.06 5.64 38.21 0.22 2.28 16 19 N -0.49 -8.34 4.70 -695.41 -3.27 -11.61 16 20 C 0.06 0.80 5.26 86.32 0.45 1.25 16 21 C -0.12 -1.21 6.09 30.65 0.19 -1.02 16 22 C -0.12 -1.18 6.00 30.67 0.18 -0.99 16 23 C -0.12 -1.21 6.09 30.65 0.19 -1.02 16 24 C 0.05 0.67 4.15 86.33 0.36 1.03 16 25 C -0.15 -2.89 9.16 22.40 0.21 -2.69 16 26 C -0.09 -1.90 7.95 22.25 0.18 -1.73 16 27 H 0.08 1.93 6.16 -2.39 -0.01 1.91 16 28 H 0.06 1.84 6.30 -2.38 -0.02 1.83 16 29 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 2.46 7.93 -2.39 -0.02 2.44 16 31 H 0.03 0.95 8.12 -2.38 -0.02 0.93 16 32 H 0.05 2.11 6.47 -2.39 -0.02 2.09 16 33 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 34 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 35 H -0.01 -0.54 8.14 -2.39 -0.02 -0.55 16 36 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 37 H 0.04 1.07 8.06 -2.38 -0.02 1.06 16 38 H 0.08 2.03 7.87 -2.39 -0.02 2.01 16 39 H 0.12 2.72 8.06 -2.91 -0.02 2.70 16 40 H 0.14 2.38 5.81 -2.91 -0.02 2.36 16 41 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.08 1.14 6.70 -2.39 -0.02 1.12 16 43 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.08 1.14 6.98 -2.39 -0.02 1.13 16 50 H 0.04 0.62 7.74 -2.39 -0.02 0.60 16 51 H 0.13 2.21 7.15 -2.91 -0.02 2.19 16 52 H 0.13 2.39 8.03 -2.91 -0.02 2.37 16 Total: -1.00 -65.91 397.98 0.78 -65.12 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.86 Total: 14.25 kcal Atomic # 6 Polarization: -41.82 SS G_CDS: 5.29 Total: -36.53 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -7.39 Total: -89.91 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -65.91 0.78 -65.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057626087.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.109 kcal (2) G-P(sol) polarization free energy of solvation -65.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds