Wall clock time and date at job start Tue Mar 31 2020 12:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46906 * 110.99573 * 2 1 4 4 C 1.53000 * 109.47072 * 293.95488 * 3 2 1 5 5 C 1.52996 * 109.47188 * 180.02562 * 4 3 2 6 6 C 1.50695 * 109.47567 * 179.97438 * 5 4 3 7 7 H 1.08005 * 119.99782 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00401 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00140 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99807 * 359.97438 * 8 6 5 11 11 H 1.48496 * 109.46795 * 90.00392 * 10 8 6 12 12 H 1.48502 * 109.46981 * 210.00137 * 10 8 6 13 13 H 1.48498 * 109.47192 * 330.00330 * 10 8 6 14 14 C 1.46898 * 111.00283 * 123.95141 * 2 1 3 15 15 C 1.50702 * 109.46796 * 66.04964 * 14 2 1 16 16 C 1.33366 * 125.19387 * 90.00008 * 15 14 2 17 17 C 1.38452 * 114.92846 * 180.02562 * 16 15 14 18 18 C 1.33475 * 114.89291 * 359.97438 * 17 16 15 19 19 Br 1.89104 * 125.20703 * 180.02562 * 18 17 16 20 20 S 1.75877 * 109.58717 * 359.73448 * 18 17 16 21 21 H 1.09004 * 109.47457 * 60.00221 * 1 2 3 22 22 H 1.09001 * 109.46615 * 179.97438 * 1 2 3 23 23 H 1.08990 * 109.47358 * 299.99539 * 1 2 3 24 24 H 1.08993 * 109.47164 * 53.95342 * 3 2 1 25 25 H 1.08996 * 109.46920 * 173.95376 * 3 2 1 26 26 H 1.09002 * 109.46936 * 299.99708 * 4 3 2 27 27 H 1.08996 * 109.47340 * 60.00144 * 4 3 2 28 28 H 1.08999 * 109.47452 * 300.00348 * 5 4 3 29 29 H 1.09012 * 109.47215 * 59.99738 * 5 4 3 30 30 H 0.96999 * 119.99997 * 179.97438 * 9 8 6 31 31 H 1.08999 * 109.46988 * 186.04548 * 14 2 1 32 32 H 1.08996 * 109.46945 * 306.05035 * 14 2 1 33 33 H 1.07997 * 122.53582 * 359.97438 * 16 15 14 34 34 H 1.08004 * 122.55240 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0575 -1.3183 5 6 2.1800 3.4857 -1.3185 6 6 1.8220 4.1612 -2.6172 7 1 1.2597 3.6253 -3.3675 8 6 2.2132 5.4630 -2.8479 9 7 1.9003 6.0526 -3.9810 10 14 3.1864 6.3897 -1.5504 11 1 4.6387 6.1757 -1.7744 12 1 2.8796 7.8397 -1.6432 13 1 2.8146 5.8903 -0.2022 14 6 1.9955 -0.7659 1.1376 15 6 1.6371 -2.2204 0.9728 16 6 2.3841 -3.1298 0.3455 17 6 1.8493 -4.4066 0.3191 18 6 0.6673 -4.5333 0.9260 19 35 -0.3209 -6.1397 1.0638 20 16 0.1734 -2.9794 1.5853 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8899 24 1 1.5610 1.9274 0.8308 25 1 3.0796 1.3445 0.1082 26 1 2.0657 1.5016 -2.1492 27 1 0.5471 2.0845 -1.4265 28 1 1.7461 4.0418 -0.4876 29 1 3.2644 3.4583 -1.2105 30 1 2.1752 6.9686 -4.1432 31 1 3.0798 -0.6610 1.1755 32 1 1.5611 -0.3872 2.0627 33 1 3.3339 -2.8884 -0.1082 34 1 2.3504 -5.2368 -0.1565 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057642214.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:54 Heat of formation + Delta-G solvation = 29.761144 kcal Electronic energy + Delta-G solvation = -15851.774995 eV Core-core repulsion = 13150.371962 eV Total energy + Delta-G solvation = -2701.403033 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.66291 -37.26639 -33.88967 -32.40640 -31.54121 -29.76336 -27.45566 -26.57236 -24.53557 -22.93367 -21.26462 -19.96611 -19.31269 -17.42333 -16.69310 -15.82849 -15.72171 -15.23162 -14.27102 -14.02916 -13.94694 -13.49150 -13.15641 -12.92847 -12.69959 -12.51002 -11.99048 -11.77591 -11.66081 -11.47373 -11.12458 -11.06051 -10.96704 -10.73171 -10.59696 -9.92505 -9.69291 -9.63207 -9.17414 -8.85500 -8.72090 -8.53047 -8.24849 -6.03242 -4.01073 0.49428 0.78607 1.48942 1.63210 2.37426 3.30529 3.37859 3.41004 4.07479 4.45556 4.50786 4.94064 5.06782 5.20130 5.30121 5.31726 5.38527 5.51934 5.67591 5.69235 5.79959 5.92240 6.04384 6.12189 6.13714 6.51127 6.52761 6.88502 7.10228 7.16111 7.34088 7.45772 7.80917 8.55914 9.02431 9.59257 11.10363 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.047614 B = 0.002266 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.925354 B =12354.043762 C =12496.206821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.535 5.535 3 C 0.054 3.946 4 C -0.097 4.097 5 C -0.013 4.013 6 C -0.519 4.519 7 H 0.072 0.928 8 C 0.065 3.935 9 N -0.904 5.904 10 Si 0.881 3.119 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.266 1.266 14 C 0.118 3.882 15 C -0.144 4.144 16 C -0.126 4.126 17 C -0.085 4.085 18 C -0.213 4.213 19 Br 0.001 6.999 20 S 0.149 5.851 21 H 0.081 0.919 22 H 0.064 0.936 23 H 0.024 0.976 24 H 0.031 0.969 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.013 0.987 29 H 0.011 0.989 30 H 0.263 0.737 31 H 0.097 0.903 32 H 0.045 0.955 33 H 0.150 0.850 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.602 -26.111 14.567 30.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.259 5.259 3 C -0.073 4.073 4 C -0.135 4.135 5 C -0.051 4.051 6 C -0.557 4.557 7 H 0.090 0.910 8 C -0.136 4.136 9 N -0.544 5.544 10 Si 0.708 3.292 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.191 1.191 14 C -0.011 4.011 15 C -0.263 4.263 16 C -0.157 4.157 17 C -0.119 4.119 18 C -0.409 4.409 19 Br 0.085 6.915 20 S 0.412 5.588 21 H 0.100 0.900 22 H 0.083 0.917 23 H 0.043 0.957 24 H 0.049 0.951 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.031 0.969 29 H 0.029 0.971 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.063 0.937 33 H 0.168 0.832 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.068 -26.259 14.920 30.475 hybrid contribution 1.632 0.781 0.420 1.858 sum -2.436 -25.478 15.340 29.839 Atomic orbital electron populations 1.22583 0.87465 1.01750 1.01627 1.62084 1.08170 1.14975 1.40655 1.22375 0.99653 0.85900 0.99386 1.21478 1.00660 0.96852 0.94522 1.19551 0.95698 0.92141 0.97692 1.21142 1.35537 0.97863 1.01112 0.91021 1.25045 0.95729 0.97543 0.95286 1.69917 1.47054 1.13286 1.24102 0.86767 0.80658 0.78923 0.82842 1.20301 1.21446 1.19100 1.20645 1.01205 0.86389 0.92885 1.24665 0.97712 0.99885 1.04032 1.20070 1.02500 0.91291 1.01829 1.20230 0.93741 0.98726 0.99212 1.26043 1.02669 0.97522 1.14683 1.96699 1.71566 1.25605 1.97672 1.84401 1.21732 0.97453 1.55227 0.90044 0.91706 0.95712 0.95088 0.91010 0.91897 0.92733 0.96880 0.97073 0.92772 0.88486 0.93706 0.83198 0.83519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.12 60.07 0.55 0.73 16 2 N -0.53 -7.38 4.75 -244.37 -1.16 -8.55 16 3 C 0.05 0.84 4.96 -3.82 -0.02 0.82 16 4 C -0.10 -1.90 5.08 -26.73 -0.14 -2.04 16 5 C -0.01 -0.31 4.04 -27.89 -0.11 -0.42 16 6 C -0.52 -14.86 9.66 -34.44 -0.33 -15.19 16 7 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 8 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 9 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 10 Si 0.88 21.72 27.47 -169.99 -4.67 17.06 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 14 C 0.12 1.32 5.46 -4.98 -0.03 1.29 16 15 C -0.14 -1.54 5.24 -36.01 -0.19 -1.72 16 16 C -0.13 -1.26 10.05 -41.21 -0.41 -1.67 16 17 C -0.08 -0.81 10.11 -41.17 -0.42 -1.22 16 18 C -0.21 -2.13 6.97 29.07 0.20 -1.93 16 19 Br 0.00 0.01 34.07 -68.01 -2.32 -2.31 16 20 S 0.15 1.51 21.82 -107.50 -2.35 -0.83 16 21 H 0.08 1.16 6.47 -51.93 -0.34 0.82 16 22 H 0.06 0.79 5.85 -51.93 -0.30 0.49 16 23 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.03 0.48 8.12 -51.93 -0.42 0.05 16 25 H 0.07 1.06 7.93 -51.93 -0.41 0.65 16 26 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.05 1.07 6.55 -51.93 -0.34 0.73 16 28 H 0.01 0.31 7.20 -51.93 -0.37 -0.07 16 29 H 0.01 0.26 7.57 -51.92 -0.39 -0.14 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.10 0.98 7.93 -51.93 -0.41 0.57 16 32 H 0.04 0.47 8.12 -51.93 -0.42 0.05 16 33 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.15 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 313.41 15.07 4.72 4.72 Total: -1.00 -30.38 313.41 -10.68 -41.07 By element: Atomic # 1 Polarization: 0.39 SS G_CDS: -4.69 Total: -4.30 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: -0.99 Total: -19.54 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: -0.39 Total: -35.86 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.06 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.35 Total: -0.83 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -2.32 Total: -2.31 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.38 -10.68 -41.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057642214.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.827 kcal (2) G-P(sol) polarization free energy of solvation -30.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds