Wall clock time and date at job start Tue Mar 31 2020 12:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46906 * 110.99573 * 2 1 4 4 C 1.53000 * 109.47072 * 293.95488 * 3 2 1 5 5 C 1.52996 * 109.47188 * 180.02562 * 4 3 2 6 6 C 1.50695 * 109.47567 * 179.97438 * 5 4 3 7 7 H 1.08005 * 119.99782 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00401 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00140 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99807 * 359.97438 * 8 6 5 11 11 H 1.48496 * 109.46795 * 90.00392 * 10 8 6 12 12 H 1.48502 * 109.46981 * 210.00137 * 10 8 6 13 13 H 1.48498 * 109.47192 * 330.00330 * 10 8 6 14 14 C 1.46898 * 111.00283 * 123.95141 * 2 1 3 15 15 C 1.50702 * 109.46796 * 66.04964 * 14 2 1 16 16 C 1.33366 * 125.19387 * 90.00008 * 15 14 2 17 17 C 1.38452 * 114.92846 * 180.02562 * 16 15 14 18 18 C 1.33475 * 114.89291 * 359.97438 * 17 16 15 19 19 Br 1.89104 * 125.20703 * 180.02562 * 18 17 16 20 20 S 1.75877 * 109.58717 * 359.73448 * 18 17 16 21 21 H 1.09004 * 109.47457 * 60.00221 * 1 2 3 22 22 H 1.09001 * 109.46615 * 179.97438 * 1 2 3 23 23 H 1.08990 * 109.47358 * 299.99539 * 1 2 3 24 24 H 1.08993 * 109.47164 * 53.95342 * 3 2 1 25 25 H 1.08996 * 109.46920 * 173.95376 * 3 2 1 26 26 H 1.09002 * 109.46936 * 299.99708 * 4 3 2 27 27 H 1.08996 * 109.47340 * 60.00144 * 4 3 2 28 28 H 1.08999 * 109.47452 * 300.00348 * 5 4 3 29 29 H 1.09012 * 109.47215 * 59.99738 * 5 4 3 30 30 H 0.96999 * 119.99997 * 179.97438 * 9 8 6 31 31 H 1.08999 * 109.46988 * 186.04548 * 14 2 1 32 32 H 1.08996 * 109.46945 * 306.05035 * 14 2 1 33 33 H 1.07997 * 122.53582 * 359.97438 * 16 15 14 34 34 H 1.08004 * 122.55240 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0575 -1.3183 5 6 2.1800 3.4857 -1.3185 6 6 1.8220 4.1612 -2.6172 7 1 1.2597 3.6253 -3.3675 8 6 2.2132 5.4630 -2.8479 9 7 1.9003 6.0526 -3.9810 10 14 3.1864 6.3897 -1.5504 11 1 4.6387 6.1757 -1.7744 12 1 2.8796 7.8397 -1.6432 13 1 2.8146 5.8903 -0.2022 14 6 1.9955 -0.7659 1.1376 15 6 1.6371 -2.2204 0.9728 16 6 2.3841 -3.1298 0.3455 17 6 1.8493 -4.4066 0.3191 18 6 0.6673 -4.5333 0.9260 19 35 -0.3209 -6.1397 1.0638 20 16 0.1734 -2.9794 1.5853 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8899 24 1 1.5610 1.9274 0.8308 25 1 3.0796 1.3445 0.1082 26 1 2.0657 1.5016 -2.1492 27 1 0.5471 2.0845 -1.4265 28 1 1.7461 4.0418 -0.4876 29 1 3.2644 3.4583 -1.2105 30 1 2.1752 6.9686 -4.1432 31 1 3.0798 -0.6610 1.1755 32 1 1.5611 -0.3872 2.0627 33 1 3.3339 -2.8884 -0.1082 34 1 2.3504 -5.2368 -0.1565 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057642214.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:52 Heat of formation + Delta-G solvation = 11.914315 kcal Electronic energy + Delta-G solvation = -15852.548892 eV Core-core repulsion = 13150.371962 eV Total energy + Delta-G solvation = -2702.176930 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 317.014 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -39.55417 -38.25598 -35.68459 -33.83774 -32.83155 -30.77000 -28.94255 -27.62074 -25.74979 -24.05494 -22.62205 -21.53829 -20.07464 -18.87799 -18.19463 -16.88661 -16.66999 -16.42246 -16.02598 -15.28808 -15.18650 -14.73308 -14.27338 -13.99820 -13.81390 -13.69426 -13.42597 -13.24348 -12.79366 -12.65275 -12.49739 -12.38446 -11.91970 -11.81378 -11.74437 -11.51335 -11.35701 -11.32042 -11.22907 -10.74395 -9.64943 -9.48884 -9.27843 -8.27712 -6.32132 -0.27445 0.04392 0.74099 0.87462 1.37637 1.39847 1.51818 1.62439 2.38113 3.03134 3.07710 3.69063 4.07073 4.18237 4.29661 4.32768 4.40765 4.52581 4.61499 4.69235 4.71298 4.88573 4.94561 4.98324 5.00128 5.14376 5.18176 5.38530 5.54679 5.62566 5.68527 6.03394 6.07411 6.32022 6.76649 7.32465 8.89465 Molecular weight = 317.01amu Principal moments of inertia in cm(-1) A = 0.047614 B = 0.002266 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.925354 B =12354.043762 C =12496.206821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.545 5.545 3 C 0.066 3.934 4 C -0.089 4.089 5 C -0.009 4.009 6 C -0.533 4.533 7 H 0.027 0.973 8 C -0.001 4.001 9 N -0.955 5.955 10 Si 0.956 3.044 11 H -0.265 1.265 12 H -0.286 1.286 13 H -0.243 1.243 14 C 0.120 3.880 15 C -0.156 4.156 16 C -0.126 4.126 17 C -0.087 4.087 18 C -0.223 4.223 19 Br 0.008 6.992 20 S 0.143 5.857 21 H 0.063 0.937 22 H 0.073 0.927 23 H 0.032 0.968 24 H 0.038 0.962 25 H 0.086 0.914 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.020 0.980 29 H 0.022 0.978 30 H 0.266 0.734 31 H 0.111 0.889 32 H 0.053 0.947 33 H 0.163 0.837 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.365 -26.848 16.817 31.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.269 5.269 3 C -0.062 4.062 4 C -0.127 4.127 5 C -0.047 4.047 6 C -0.571 4.571 7 H 0.045 0.955 8 C -0.197 4.197 9 N -0.596 5.596 10 Si 0.778 3.222 11 H -0.190 1.190 12 H -0.212 1.212 13 H -0.166 1.166 14 C -0.009 4.009 15 C -0.275 4.275 16 C -0.157 4.157 17 C -0.121 4.121 18 C -0.419 4.419 19 Br 0.092 6.908 20 S 0.406 5.594 21 H 0.082 0.918 22 H 0.092 0.908 23 H 0.050 0.950 24 H 0.056 0.944 25 H 0.104 0.896 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.038 0.962 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.129 0.871 32 H 0.072 0.928 33 H 0.180 0.820 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.840 -27.028 17.184 32.154 hybrid contribution 1.175 0.907 -0.377 1.531 sum -1.665 -26.121 16.807 31.106 Atomic orbital electron populations 1.22546 0.87432 1.02182 1.01094 1.61982 1.08346 1.14065 1.42552 1.22121 1.00577 0.86742 0.96723 1.21289 0.99718 0.94970 0.96708 1.19492 0.96427 0.93985 0.94834 1.21530 1.34876 0.98264 1.02462 0.95466 1.26101 0.97033 0.98696 0.97847 1.70085 1.48850 1.13934 1.26698 0.85581 0.79148 0.77095 0.80336 1.18985 1.21199 1.16646 1.20679 1.01979 0.86165 0.92030 1.24670 0.98122 0.99822 1.04919 1.20297 1.02860 0.91316 1.01199 1.20460 0.93569 0.99172 0.98859 1.26219 1.03081 0.97782 1.14832 1.96705 1.71446 1.25001 1.97657 1.84384 1.21813 0.97814 1.55402 0.91831 0.90833 0.94959 0.94383 0.89605 0.93376 0.93729 0.96192 0.95933 0.92547 0.87087 0.92850 0.81996 0.81802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.12 127.69 1.16 1.57 16 2 N -0.55 -14.02 4.75 -927.06 -4.41 -18.42 16 3 C 0.07 1.90 4.96 86.30 0.43 2.33 16 4 C -0.09 -3.43 5.08 30.59 0.16 -3.28 16 5 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 6 C -0.53 -31.20 9.66 25.60 0.25 -30.95 16 7 H 0.03 1.76 7.99 -2.91 -0.02 1.74 16 8 C 0.00 -0.04 5.47 84.65 0.46 0.43 16 9 N -0.95 -60.75 13.96 21.45 0.30 -60.45 16 10 Si 0.96 44.08 27.47 68.60 1.88 45.96 16 11 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 12 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 13 H -0.24 -10.24 6.54 99.48 0.65 -9.59 16 14 C 0.12 2.38 5.46 85.56 0.47 2.84 16 15 C -0.16 -3.01 5.24 24.58 0.13 -2.88 16 16 C -0.13 -2.23 10.05 21.22 0.21 -2.01 16 17 C -0.09 -1.47 10.11 21.24 0.21 -1.25 16 18 C -0.22 -4.11 6.97 66.74 0.46 -3.64 16 19 Br 0.01 0.14 34.07 -20.37 -0.69 -0.56 16 20 S 0.14 2.68 21.82 -56.49 -1.23 1.45 16 21 H 0.06 1.81 6.47 -2.38 -0.02 1.80 16 22 H 0.07 1.71 5.85 -2.39 -0.01 1.70 16 23 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.04 1.06 8.12 -2.39 -0.02 1.04 16 25 H 0.09 2.26 7.93 -2.39 -0.02 2.24 16 26 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.04 1.78 6.55 -2.39 -0.02 1.76 16 28 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 29 H 0.02 0.99 7.57 -2.38 -0.02 0.97 16 30 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 31 H 0.11 1.88 7.93 -2.39 -0.02 1.86 16 32 H 0.05 0.98 8.12 -2.39 -0.02 0.96 16 33 H 0.16 2.42 8.06 -2.91 -0.02 2.39 16 34 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -65.91 313.41 0.95 -64.97 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: 1.03 Total: 4.22 kcal Atomic # 6 Polarization: -41.24 SS G_CDS: 4.07 Total: -37.17 kcal Atomic # 7 Polarization: -74.76 SS G_CDS: -4.11 Total: -78.87 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.88 Total: 45.96 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -1.23 Total: 1.45 kcal Atomic # 35 Polarization: 0.14 SS G_CDS: -0.69 Total: -0.56 kcal Total: -65.91 0.95 -64.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057642214.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.881 kcal (2) G-P(sol) polarization free energy of solvation -65.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds