Wall clock time and date at job start Tue Mar 31 2020 11:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47066 * 2 1 4 4 C 1.50706 * 109.47328 * 119.99981 * 2 1 3 5 5 H 1.08000 * 120.00266 * 119.99645 * 4 2 1 6 6 C 1.37882 * 119.99609 * 300.00179 * 4 2 1 7 7 N 1.31508 * 120.00060 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99462 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47354 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46989 * 119.99945 * 8 6 4 11 11 H 1.48496 * 109.47105 * 239.99694 * 8 6 4 12 12 N 1.46499 * 109.47011 * 239.99945 * 2 1 3 13 13 C 1.46496 * 120.00035 * 299.99912 * 12 2 1 14 14 C 1.34779 * 119.99800 * 120.00103 * 12 2 1 15 15 O 1.21708 * 120.00112 * 6.08522 * 14 12 2 16 16 C 1.46500 * 119.99793 * 186.08082 * 14 12 2 17 17 C 1.36676 * 125.44923 * 186.84821 * 16 14 12 18 18 C 1.37420 * 113.30927 * 179.80329 * 17 16 14 19 19 C 1.33963 * 115.07952 * 0.49398 * 18 17 16 20 20 Br 1.89109 * 124.52808 * 179.76333 * 19 18 17 21 21 S 1.70614 * 110.94149 * 359.72984 * 19 18 17 22 22 H 1.09006 * 109.46965 * 300.00159 * 1 2 3 23 23 H 1.08990 * 109.47202 * 60.00148 * 1 2 3 24 24 H 1.09004 * 109.47176 * 180.02562 * 1 2 3 25 25 H 0.97010 * 119.99798 * 179.97438 * 7 6 4 26 26 H 1.08995 * 109.47251 * 95.93332 * 13 12 2 27 27 H 1.09004 * 109.47224 * 335.93328 * 13 12 2 28 28 H 1.09000 * 109.47457 * 215.93676 * 13 12 2 29 29 H 1.07998 * 123.34852 * 359.97438 * 17 16 14 30 30 H 1.07997 * 122.45889 * 180.23767 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9436 0.8302 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.1465 -2.2869 3.6038 10 1 3.1467 -0.1873 4.8165 11 1 1.1662 -1.5866 4.8161 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.1788 1.0925 -1.8382 16 6 3.1714 -0.6815 -3.3427 17 6 4.0536 -0.1790 -4.2576 18 6 4.2278 -0.9945 -5.3499 19 6 3.5054 -2.1226 -5.3372 20 35 3.5338 -3.4290 -6.7042 21 16 2.5570 -2.2236 -3.9225 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 0.7089 1.1614 3.4845 26 1 0.7978 -2.1451 -2.0869 27 1 1.4268 -2.5699 -0.4770 28 1 2.5053 -2.6082 -1.8924 29 1 4.5653 0.7639 -4.1332 30 1 4.8949 -0.7425 -6.1609 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094207.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:49 Heat of formation + Delta-G solvation = -13.362573 kcal Electronic energy + Delta-G solvation = -16480.256502 eV Core-core repulsion = 13641.150389 eV Total energy + Delta-G solvation = -2839.106113 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.91641 -38.73464 -37.15702 -34.93140 -33.05120 -31.69325 -29.49682 -27.96420 -27.31008 -25.73355 -23.53675 -21.33488 -19.97338 -19.07159 -18.41650 -17.44186 -16.92336 -16.58815 -16.37221 -15.64034 -14.76228 -14.55536 -14.36792 -14.14211 -14.07111 -13.75507 -13.51247 -13.14431 -12.98489 -12.77194 -12.68355 -12.23745 -12.11963 -11.96651 -11.87909 -11.33276 -11.21302 -10.93922 -10.53493 -9.85581 -9.64615 -9.34736 -8.15632 -6.32085 -0.73329 -0.05623 0.69345 0.71625 1.23048 1.42178 1.44542 1.55304 2.10571 2.21070 2.44760 3.13298 3.56325 4.10344 4.12390 4.30486 4.46333 4.70249 4.75725 4.87127 4.87488 4.96971 5.03523 5.16725 5.44152 5.51826 5.63906 5.98943 6.13138 6.61991 6.74473 7.15656 7.40177 8.89288 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.032824 B = 0.003477 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.820346 B = 8051.252468 C = 8339.379259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.262 3.738 3 H 0.013 0.987 4 C -0.540 4.540 5 H 0.063 0.937 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.965 3.035 9 H -0.265 1.265 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.592 5.592 13 C 0.062 3.938 14 C 0.565 3.435 15 O -0.588 6.588 16 C -0.274 4.274 17 C -0.063 4.063 18 C -0.105 4.105 19 C -0.260 4.260 20 Br 0.023 6.977 21 S 0.327 5.673 22 H 0.071 0.929 23 H 0.022 0.978 24 H 0.051 0.949 25 H 0.265 0.735 26 H 0.081 0.919 27 H 0.100 0.900 28 H 0.081 0.919 29 H 0.155 0.845 30 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.114 -12.285 -19.283 23.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.161 3.839 3 H 0.031 0.969 4 C -0.579 4.579 5 H 0.081 0.919 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.790 3.210 9 H -0.189 1.189 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.321 5.321 13 C -0.082 4.082 14 C 0.353 3.647 15 O -0.472 6.472 16 C -0.396 4.396 17 C -0.097 4.097 18 C -0.139 4.139 19 C -0.458 4.458 20 Br 0.107 6.893 21 S 0.596 5.404 22 H 0.089 0.911 23 H 0.041 0.959 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.119 0.881 28 H 0.099 0.901 29 H 0.173 0.827 30 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 2.171 -13.203 -18.979 23.222 hybrid contribution 1.345 1.503 0.704 2.137 sum 3.516 -11.700 -18.275 21.982 Atomic orbital electron populations 1.21899 0.96483 1.00562 1.00234 1.18670 0.91941 0.92305 0.81027 0.96895 1.21578 1.32090 1.13231 0.90957 0.91908 1.25706 0.94964 0.95582 1.01949 1.70020 1.37168 1.23777 1.24477 0.85401 0.78236 0.78482 0.78859 1.18874 1.21301 1.19854 1.48129 1.48438 1.12910 1.22620 1.22050 1.01129 0.81077 1.03991 1.17534 0.78727 0.85311 0.83098 1.90753 1.56790 1.21025 1.78626 1.24861 1.09942 1.03664 1.01160 1.20828 0.96144 1.00955 0.91783 1.20100 1.01496 0.92277 0.99995 1.26720 1.11651 1.02443 1.05033 1.96721 1.98280 1.49293 1.45015 1.83487 1.38752 1.13431 1.04720 0.91062 0.95936 0.92974 0.92551 0.90059 0.88148 0.90104 0.82720 0.81061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.26 8.97 71.98 0.65 -5.62 16 2 C 0.26 13.51 2.62 44.25 0.12 13.63 16 3 H 0.01 0.81 6.91 -2.39 -0.02 0.79 16 4 C -0.54 -28.88 7.95 25.60 0.20 -28.68 16 5 H 0.06 3.26 7.43 -2.91 -0.02 3.24 16 6 C 0.02 0.97 5.30 84.66 0.45 1.41 16 7 N -0.92 -51.94 11.32 21.45 0.24 -51.70 16 8 Si 0.97 42.34 29.54 68.60 2.03 44.37 16 9 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 10 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 12 N -0.59 -25.26 2.75 -831.72 -2.29 -27.55 16 13 C 0.06 1.93 7.76 127.77 0.99 2.92 16 14 C 0.56 24.46 7.62 86.40 0.66 25.12 16 15 O -0.59 -30.85 16.19 -4.37 -0.07 -30.92 16 16 C -0.27 -8.85 6.20 24.06 0.15 -8.70 16 17 C -0.06 -1.74 10.01 21.71 0.22 -1.52 16 18 C -0.11 -2.28 10.05 21.10 0.21 -2.06 16 19 C -0.26 -5.54 6.70 66.85 0.45 -5.09 16 20 Br 0.02 0.40 34.04 -20.37 -0.69 -0.29 16 21 S 0.33 7.56 17.88 -56.49 -1.01 6.55 16 22 H 0.07 3.73 6.07 -2.38 -0.01 3.71 16 23 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.05 2.18 7.67 -2.39 -0.02 2.16 16 25 H 0.27 14.21 8.31 -92.70 -0.77 13.44 16 26 H 0.08 2.08 7.48 -2.39 -0.02 2.07 16 27 H 0.10 3.23 7.12 -2.38 -0.02 3.22 16 28 H 0.08 2.16 5.15 -17.76 -0.09 2.06 16 29 H 0.16 4.30 8.06 -2.91 -0.02 4.28 16 30 H 0.17 2.77 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -66.10 286.64 3.38 -62.71 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: 1.09 Total: 5.42 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 4.09 Total: -8.59 kcal Atomic # 7 Polarization: -77.20 SS G_CDS: -2.05 Total: -79.25 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -0.07 Total: -30.92 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: 7.56 SS G_CDS: -1.01 Total: 6.55 kcal Atomic # 35 Polarization: 0.40 SS G_CDS: -0.69 Total: -0.29 kcal Total: -66.10 3.38 -62.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094207.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.351 kcal (2) G-P(sol) polarization free energy of solvation -66.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds