Wall clock time and date at job start Tue Mar 31 2020 11:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47361 * 2 1 4 4 C 1.50710 * 109.46927 * 239.99854 * 2 1 3 5 5 H 1.07995 * 120.00185 * 240.00023 * 4 2 1 6 6 C 1.37879 * 119.99516 * 60.00455 * 4 2 1 7 7 N 1.31512 * 120.00290 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99544 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47002 * 89.99920 * 8 6 4 10 10 H 1.48497 * 109.47168 * 209.99791 * 8 6 4 11 11 H 1.48504 * 109.47253 * 330.00284 * 8 6 4 12 12 N 1.46497 * 109.47212 * 120.00222 * 2 1 3 13 13 C 1.46509 * 119.99933 * 59.99580 * 12 2 1 14 14 C 1.34778 * 120.00142 * 239.99898 * 12 2 1 15 15 O 1.21712 * 119.99887 * 353.96533 * 14 12 2 16 16 C 1.46496 * 119.99887 * 174.23917 * 14 12 2 17 17 C 1.36682 * 125.44987 * 172.30619 * 16 14 12 18 18 C 1.37413 * 113.31275 * 179.97438 * 17 16 14 19 19 C 1.33960 * 115.08110 * 0.02562 * 18 17 16 20 20 Br 1.89104 * 124.53208 * 180.02562 * 19 18 17 21 21 S 1.70614 * 110.94076 * 359.75438 * 19 18 17 22 22 H 1.08994 * 109.47168 * 300.00204 * 1 2 3 23 23 H 1.09003 * 109.46623 * 59.99675 * 1 2 3 24 24 H 1.08998 * 109.46985 * 179.97438 * 1 2 3 25 25 H 0.96998 * 119.99600 * 180.02562 * 7 6 4 26 26 H 1.08993 * 109.47027 * 264.01069 * 13 12 2 27 27 H 1.08994 * 109.47048 * 24.01129 * 13 12 2 28 28 H 1.08997 * 109.46747 * 144.01265 * 13 12 2 29 29 H 1.08003 * 123.34176 * 359.95770 * 17 16 14 30 30 H 1.07999 * 122.45664 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.3446 -2.1615 -4.4124 10 1 2.4872 -0.1402 -5.1121 11 1 3.6307 -1.7567 -3.7120 12 7 2.0183 -0.6906 1.1961 13 6 1.6643 -2.0933 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.1781 1.0928 1.8386 16 6 3.1772 -0.6843 3.3395 17 6 4.0724 -0.1893 4.2459 18 6 4.2458 -1.0034 5.3393 19 6 3.5185 -2.1283 5.3307 20 35 3.5488 -3.4349 6.6974 21 16 2.5555 -2.2211 3.9254 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7082 1.1609 -3.4844 26 1 0.7984 -2.1451 2.0878 27 1 1.4257 -2.5697 0.4771 28 1 2.5056 -2.6084 1.8914 29 1 4.5922 0.7485 4.1156 30 1 4.9196 -0.7549 6.1459 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094208.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:54 Heat of formation + Delta-G solvation = 4.136184 kcal Electronic energy + Delta-G solvation = -16479.303965 eV Core-core repulsion = 13640.956655 eV Total energy + Delta-G solvation = -2838.347310 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -39.34119 -37.56124 -35.41427 -33.05447 -31.96092 -29.97746 -28.23509 -26.51414 -25.29553 -24.50868 -22.03659 -19.74733 -18.75698 -17.58784 -16.51476 -15.90533 -15.64659 -14.93201 -14.82623 -14.11832 -13.43745 -13.04850 -13.02856 -12.68292 -12.63995 -12.50337 -11.88843 -11.67137 -11.15124 -11.02642 -10.89694 -10.83910 -10.75499 -10.36057 -10.30529 -10.22434 -9.36368 -9.20904 -8.68745 -8.57646 -8.48854 -7.74444 -6.13226 -4.21771 0.41543 0.98531 1.70411 1.81812 2.35862 3.23521 3.31170 3.33683 3.62819 3.75931 4.34978 4.92689 5.16198 5.18678 5.31283 5.41157 5.71561 5.79871 6.02489 6.17019 6.22983 6.67322 6.74231 6.95857 7.26413 7.41476 7.63425 7.92407 8.09646 8.33678 8.70571 8.86896 9.44808 10.92222 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.032775 B = 0.003477 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.096435 B = 8050.587005 C = 8335.742470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.259 3.741 3 H 0.067 0.933 4 C -0.529 4.529 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.583 5.583 13 C 0.066 3.934 14 C 0.571 3.429 15 O -0.533 6.533 16 C -0.230 4.230 17 C -0.075 4.075 18 C -0.105 4.105 19 C -0.265 4.265 20 Br -0.004 7.004 21 S 0.281 5.719 22 H 0.012 0.988 23 H 0.096 0.904 24 H 0.031 0.969 25 H 0.264 0.736 26 H 0.054 0.946 27 H 0.104 0.896 28 H 0.060 0.940 29 H 0.158 0.842 30 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.865 -9.675 17.704 20.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.159 3.841 3 H 0.084 0.916 4 C -0.568 4.568 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.314 5.314 13 C -0.080 4.080 14 C 0.357 3.643 15 O -0.412 6.412 16 C -0.352 4.352 17 C -0.108 4.108 18 C -0.139 4.139 19 C -0.462 4.462 20 Br 0.080 6.920 21 S 0.549 5.451 22 H 0.031 0.969 23 H 0.115 0.885 24 H 0.050 0.950 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.123 0.877 28 H 0.078 0.922 29 H 0.176 0.824 30 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.928 -10.523 17.387 20.414 hybrid contribution 1.411 0.720 -0.387 1.631 sum 3.339 -9.802 17.000 19.905 Atomic orbital electron populations 1.22115 0.97796 0.99631 1.01065 1.19056 0.91002 0.94573 0.79453 0.91560 1.21290 1.32135 1.13198 0.90159 0.92103 1.24884 0.94836 0.94920 0.98992 1.69870 1.36147 1.22476 1.23919 0.86472 0.79233 0.79300 0.82278 1.20546 1.21044 1.19874 1.48188 1.48401 1.11161 1.23626 1.21811 0.99135 0.83770 1.03261 1.16961 0.79710 0.85802 0.81867 1.90804 1.54840 1.18575 1.77031 1.25310 1.06790 1.00874 1.02249 1.20651 0.97395 1.00938 0.91791 1.19964 1.01079 0.92836 1.00056 1.26450 1.12782 1.02101 1.04901 1.96665 1.98417 1.50550 1.46389 1.83856 1.38885 1.16802 1.05544 0.96852 0.88549 0.94978 0.92566 0.92793 0.87739 0.92200 0.82425 0.83751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.97 37.16 0.33 -3.08 16 2 C 0.26 6.44 2.62 -69.08 -0.18 6.26 16 3 H 0.07 1.92 6.91 -51.93 -0.36 1.56 16 4 C -0.53 -13.91 7.95 -34.43 -0.27 -14.18 16 5 H 0.06 1.57 7.44 -52.49 -0.39 1.18 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.49 11.32 55.43 0.63 -23.86 16 8 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 12 N -0.58 -12.28 2.75 -176.87 -0.49 -12.76 16 13 C 0.07 1.08 7.76 59.85 0.46 1.55 16 14 C 0.57 12.01 7.62 -12.93 -0.10 11.91 16 15 O -0.53 -13.17 16.20 5.18 0.08 -13.09 16 16 C -0.23 -3.78 6.19 -36.82 -0.23 -4.01 16 17 C -0.07 -1.08 10.02 -40.44 -0.41 -1.48 16 18 C -0.10 -1.28 10.05 -41.39 -0.42 -1.70 16 19 C -0.26 -3.24 6.70 29.23 0.20 -3.05 16 20 Br 0.00 -0.04 34.04 -68.01 -2.32 -2.35 16 21 S 0.28 3.62 17.90 -107.50 -1.92 1.69 16 22 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 23 H 0.10 2.45 6.07 -51.93 -0.32 2.13 16 24 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 25 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 26 H 0.05 0.76 7.48 -51.93 -0.39 0.37 16 27 H 0.10 1.76 7.12 -51.93 -0.37 1.39 16 28 H 0.06 0.86 5.16 -27.97 -0.14 0.72 16 29 H 0.16 2.18 8.06 -52.48 -0.42 1.76 16 30 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 286.66 15.07 4.32 4.32 Total: -1.00 -29.39 286.66 -8.19 -37.58 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -2.77 Total: -0.98 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -0.70 Total: -6.10 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.14 Total: -36.62 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.08 Total: -13.09 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 3.62 SS G_CDS: -1.92 Total: 1.69 kcal Atomic # 35 Polarization: -0.04 SS G_CDS: -2.32 Total: -2.35 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.39 -8.19 -37.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094208.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.717 kcal (2) G-P(sol) polarization free energy of solvation -29.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds