Wall clock time and date at job start Tue Mar 31 2020 11:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47361 * 2 1 4 4 C 1.50710 * 109.46927 * 239.99854 * 2 1 3 5 5 H 1.07995 * 120.00185 * 240.00023 * 4 2 1 6 6 C 1.37879 * 119.99516 * 60.00455 * 4 2 1 7 7 N 1.31512 * 120.00290 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99544 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47002 * 89.99920 * 8 6 4 10 10 H 1.48497 * 109.47168 * 209.99791 * 8 6 4 11 11 H 1.48504 * 109.47253 * 330.00284 * 8 6 4 12 12 N 1.46497 * 109.47212 * 120.00222 * 2 1 3 13 13 C 1.46509 * 119.99933 * 59.99580 * 12 2 1 14 14 C 1.34778 * 120.00142 * 239.99898 * 12 2 1 15 15 O 1.21712 * 119.99887 * 353.96533 * 14 12 2 16 16 C 1.46496 * 119.99887 * 174.23917 * 14 12 2 17 17 C 1.36682 * 125.44987 * 172.30619 * 16 14 12 18 18 C 1.37413 * 113.31275 * 179.97438 * 17 16 14 19 19 C 1.33960 * 115.08110 * 0.02562 * 18 17 16 20 20 Br 1.89104 * 124.53208 * 180.02562 * 19 18 17 21 21 S 1.70614 * 110.94076 * 359.75438 * 19 18 17 22 22 H 1.08994 * 109.47168 * 300.00204 * 1 2 3 23 23 H 1.09003 * 109.46623 * 59.99675 * 1 2 3 24 24 H 1.08998 * 109.46985 * 179.97438 * 1 2 3 25 25 H 0.96998 * 119.99600 * 180.02562 * 7 6 4 26 26 H 1.08993 * 109.47027 * 264.01069 * 13 12 2 27 27 H 1.08994 * 109.47048 * 24.01129 * 13 12 2 28 28 H 1.08997 * 109.46747 * 144.01265 * 13 12 2 29 29 H 1.08003 * 123.34176 * 359.95770 * 17 16 14 30 30 H 1.07999 * 122.45664 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.3446 -2.1615 -4.4124 10 1 2.4872 -0.1402 -5.1121 11 1 3.6307 -1.7567 -3.7120 12 7 2.0183 -0.6906 1.1961 13 6 1.6643 -2.0933 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 3.1781 1.0928 1.8386 16 6 3.1772 -0.6843 3.3395 17 6 4.0724 -0.1893 4.2459 18 6 4.2458 -1.0034 5.3393 19 6 3.5185 -2.1283 5.3307 20 35 3.5488 -3.4349 6.6974 21 16 2.5555 -2.2211 3.9254 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7082 1.1609 -3.4844 26 1 0.7984 -2.1451 2.0878 27 1 1.4257 -2.5697 0.4771 28 1 2.5056 -2.6084 1.8914 29 1 4.5922 0.7485 4.1156 30 1 4.9196 -0.7549 6.1459 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094208.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:53 Heat of formation + Delta-G solvation = -13.315970 kcal Electronic energy + Delta-G solvation = -16480.060747 eV Core-core repulsion = 13640.956655 eV Total energy + Delta-G solvation = -2839.104092 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 316.983 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.91574 -38.73513 -37.15625 -34.93006 -33.05230 -31.69283 -29.49729 -27.96209 -27.30839 -25.73505 -23.53685 -21.33376 -19.97420 -19.07150 -18.41302 -17.44098 -16.92811 -16.58764 -16.36741 -15.64416 -14.75965 -14.55716 -14.36888 -14.13949 -14.06959 -13.74970 -13.50757 -13.14421 -12.98327 -12.76531 -12.67192 -12.24310 -12.14109 -11.97130 -11.87963 -11.33630 -11.22251 -10.93774 -10.52637 -9.85576 -9.64409 -9.34824 -8.15399 -6.31993 -0.73408 -0.05770 0.69200 0.71482 1.23010 1.42896 1.44871 1.54398 2.09935 2.21691 2.44866 3.13379 3.56363 4.10439 4.12589 4.30408 4.46349 4.70282 4.75640 4.87174 4.87508 4.96929 5.03527 5.16630 5.44149 5.51798 5.63830 5.99020 6.13189 6.62021 6.74327 7.15666 7.40247 8.89316 Molecular weight = 316.98amu Principal moments of inertia in cm(-1) A = 0.032775 B = 0.003477 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.096435 B = 8050.587005 C = 8335.742470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.262 3.738 3 H 0.013 0.987 4 C -0.541 4.541 5 H 0.063 0.937 6 C 0.018 3.982 7 N -0.916 5.916 8 Si 0.965 3.035 9 H -0.265 1.265 10 H -0.287 1.287 11 H -0.272 1.272 12 N -0.592 5.592 13 C 0.062 3.938 14 C 0.565 3.435 15 O -0.589 6.589 16 C -0.274 4.274 17 C -0.063 4.063 18 C -0.105 4.105 19 C -0.260 4.260 20 Br 0.024 6.976 21 S 0.327 5.673 22 H 0.022 0.978 23 H 0.071 0.929 24 H 0.051 0.949 25 H 0.265 0.735 26 H 0.081 0.919 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.155 0.845 30 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.134 -12.295 19.255 23.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.161 3.839 3 H 0.031 0.969 4 C -0.580 4.580 5 H 0.081 0.919 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.790 3.210 9 H -0.190 1.190 10 H -0.212 1.212 11 H -0.197 1.197 12 N -0.321 5.321 13 C -0.083 4.083 14 C 0.353 3.647 15 O -0.472 6.472 16 C -0.396 4.396 17 C -0.097 4.097 18 C -0.139 4.139 19 C -0.458 4.458 20 Br 0.107 6.893 21 S 0.596 5.404 22 H 0.041 0.959 23 H 0.090 0.910 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.099 0.901 27 H 0.118 0.882 28 H 0.099 0.901 29 H 0.173 0.827 30 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 2.177 -13.198 18.958 23.202 hybrid contribution 1.360 1.482 -0.706 2.132 sum 3.537 -11.716 18.252 21.975 Atomic orbital electron populations 1.21901 0.96493 1.00552 1.00238 1.18665 0.91933 0.92301 0.81017 0.96899 1.21546 1.32181 1.13258 0.90969 0.91928 1.25705 0.94965 0.95560 1.01941 1.70012 1.37129 1.23751 1.24541 0.85450 0.78855 0.78279 0.78400 1.19048 1.21244 1.19672 1.48133 1.48468 1.12907 1.22583 1.22056 1.01145 0.81074 1.03995 1.17535 0.78740 0.85325 0.83079 1.90754 1.56866 1.21021 1.78564 1.24861 1.09666 1.03798 1.01302 1.20830 0.96136 1.00938 0.91820 1.20097 1.01536 0.92297 0.99929 1.26707 1.11574 1.02480 1.05068 1.96721 1.98289 1.49271 1.45010 1.83477 1.37919 1.13740 1.05249 0.95943 0.91049 0.92990 0.92542 0.90087 0.88151 0.90070 0.82724 0.81053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.27 8.97 71.98 0.65 -5.62 16 2 C 0.26 13.54 2.62 44.25 0.12 13.65 16 3 H 0.01 0.80 6.91 -2.39 -0.02 0.79 16 4 C -0.54 -28.95 7.95 25.60 0.20 -28.75 16 5 H 0.06 3.24 7.44 -2.91 -0.02 3.22 16 6 C 0.02 0.98 5.30 84.66 0.45 1.43 16 7 N -0.92 -51.96 11.32 21.45 0.24 -51.72 16 8 Si 0.97 42.33 29.54 68.60 2.03 44.36 16 9 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 10 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 12 N -0.59 -25.27 2.75 -831.71 -2.29 -27.56 16 13 C 0.06 1.92 7.76 127.77 0.99 2.91 16 14 C 0.56 24.48 7.62 86.39 0.66 25.14 16 15 O -0.59 -30.88 16.20 -4.39 -0.07 -30.95 16 16 C -0.27 -8.86 6.19 24.06 0.15 -8.71 16 17 C -0.06 -1.74 10.02 21.71 0.22 -1.53 16 18 C -0.11 -2.28 10.05 21.10 0.21 -2.06 16 19 C -0.26 -5.53 6.70 66.85 0.45 -5.08 16 20 Br 0.02 0.40 34.04 -20.37 -0.69 -0.29 16 21 S 0.33 7.57 17.90 -56.49 -1.01 6.56 16 22 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 24 H 0.05 2.17 7.67 -2.39 -0.02 2.16 16 25 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 26 H 0.08 2.08 7.48 -2.39 -0.02 2.06 16 27 H 0.10 3.23 7.12 -2.39 -0.02 3.21 16 28 H 0.08 2.16 5.16 -17.62 -0.09 2.07 16 29 H 0.16 4.30 8.06 -2.91 -0.02 4.28 16 30 H 0.17 2.77 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -66.11 286.66 3.38 -62.73 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: 1.09 Total: 5.50 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 4.09 Total: -8.62 kcal Atomic # 7 Polarization: -77.24 SS G_CDS: -2.05 Total: -79.28 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.07 Total: -30.95 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 16 Polarization: 7.57 SS G_CDS: -1.01 Total: 6.56 kcal Atomic # 35 Polarization: 0.40 SS G_CDS: -0.69 Total: -0.29 kcal Total: -66.11 3.38 -62.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094208.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.416 kcal (2) G-P(sol) polarization free energy of solvation -66.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds