Wall clock time and date at job start Tue Mar 31 2020 10:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46893 * 111.00335 * 2 1 4 4 C 1.53000 * 109.47186 * 293.95361 * 3 2 1 5 5 C 1.53001 * 109.47355 * 179.97438 * 4 3 2 6 6 C 1.50694 * 109.47168 * 180.02562 * 5 4 3 7 7 H 1.08000 * 120.00563 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99902 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99913 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99766 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47353 * 269.99586 * 10 8 6 12 12 H 1.48501 * 109.47293 * 30.00037 * 10 8 6 13 13 H 1.48504 * 109.46680 * 149.99835 * 10 8 6 14 14 C 1.46898 * 111.00045 * 123.95688 * 2 1 3 15 15 C 1.53008 * 109.47407 * 66.04148 * 14 2 1 16 16 H 1.09003 * 110.62701 * 308.11021 * 15 14 2 17 17 C 1.55135 * 110.70356 * 71.40089 * 15 14 2 18 18 C 1.54912 * 101.65096 * 154.03806 * 17 15 14 19 19 N 1.47840 * 104.79700 * 322.93076 * 18 17 15 20 20 C 1.46898 * 110.99945 * 146.36390 * 19 18 17 21 21 C 1.50695 * 109.47143 * 69.15750 * 20 19 18 22 22 C 1.38234 * 119.99792 * 269.72444 * 21 20 19 23 23 C 1.38238 * 119.99440 * 179.76656 * 22 21 20 24 24 C 1.38228 * 120.00454 * 0.50688 * 23 22 21 25 25 C 1.38236 * 119.99896 * 359.74725 * 24 23 22 26 26 C 1.38234 * 119.99948 * 359.97438 * 25 24 23 27 27 C 1.47445 * 108.56510 * 24.09454 * 19 18 17 28 28 H 1.08996 * 109.46680 * 59.99711 * 1 2 3 29 29 H 1.08999 * 109.47065 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46177 * 300.00264 * 1 2 3 31 31 H 1.09002 * 109.47091 * 173.95726 * 3 2 1 32 32 H 1.08992 * 109.47497 * 53.95617 * 3 2 1 33 33 H 1.09002 * 109.46807 * 60.00192 * 4 3 2 34 34 H 1.08998 * 109.47285 * 299.99794 * 4 3 2 35 35 H 1.09007 * 109.46922 * 59.99890 * 5 4 3 36 36 H 1.09003 * 109.46836 * 300.00646 * 5 4 3 37 37 H 0.97001 * 119.99646 * 179.97438 * 9 8 6 38 38 H 1.09000 * 109.47476 * 186.03971 * 14 2 1 39 39 H 1.09002 * 109.47492 * 306.04358 * 14 2 1 40 40 H 1.08998 * 110.99373 * 272.13201 * 17 15 14 41 41 H 1.09004 * 110.99514 * 35.94530 * 17 15 14 42 42 H 1.09005 * 110.37043 * 204.10138 * 18 17 15 43 43 H 1.09000 * 110.46331 * 81.81237 * 18 17 15 44 44 H 1.09007 * 109.46907 * 189.15645 * 20 19 18 45 45 H 1.08996 * 109.47010 * 309.15612 * 20 19 18 46 46 H 1.07996 * 120.00199 * 359.97438 * 22 21 20 47 47 H 1.08007 * 119.99390 * 180.23081 * 23 22 21 48 48 H 1.08007 * 120.00239 * 179.72091 * 24 23 22 49 49 H 1.08003 * 120.00263 * 179.97438 * 25 24 23 50 50 H 1.07997 * 120.00036 * 179.97438 * 26 25 24 51 51 H 1.09001 * 109.88516 * 239.60355 * 27 19 18 52 52 H 1.09003 * 110.02064 * 118.49760 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6316 2.0574 -1.3183 5 6 2.1794 3.4859 -1.3180 6 6 1.8204 4.1618 -2.6162 7 1 1.2574 3.6263 -3.3663 8 6 2.2107 5.4641 -2.8464 9 7 2.8958 6.1165 -1.9328 10 14 1.7662 6.3016 -4.4559 11 1 2.8430 6.0652 -5.4508 12 1 0.4884 5.7444 -4.9675 13 1 1.6140 7.7612 -4.2287 14 6 1.9955 -0.7660 1.1375 15 6 1.6314 -2.2427 0.9703 16 1 0.5629 -2.3564 0.7870 17 6 2.4594 -2.8857 -0.1732 18 6 2.4772 -4.3750 0.2526 19 7 2.5864 -4.3449 1.7267 20 6 1.8590 -5.4688 2.3314 21 6 2.5711 -6.7580 2.0121 22 6 2.2406 -7.4660 0.8718 23 6 2.8972 -8.6461 0.5765 24 6 3.8768 -9.1236 1.4268 25 6 4.2036 -8.4183 2.5700 26 6 3.5510 -7.2352 2.8623 27 6 2.0617 -3.0546 2.2100 28 1 -0.3632 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 3.0798 1.3442 0.1082 32 1 1.5613 1.9273 0.8309 33 1 0.5473 2.0845 -1.4264 34 1 2.0659 1.5015 -2.1492 35 1 3.2637 3.4592 -1.2096 36 1 1.7448 4.0416 -0.4871 37 1 3.1707 7.0325 -2.0950 38 1 3.0798 -0.6613 1.1755 39 1 1.5612 -0.3873 2.0628 40 1 1.9609 -2.7603 -1.1344 41 1 3.4690 -2.4758 -0.2025 42 1 3.3382 -4.8834 -0.1814 43 1 1.5537 -4.8688 -0.0496 44 1 1.8171 -5.3349 3.4124 45 1 0.8462 -5.5041 1.9301 46 1 1.4719 -7.0954 0.2099 47 1 2.6416 -9.1973 -0.3165 48 1 4.3866 -10.0480 1.1984 49 1 4.9686 -8.7915 3.2346 50 1 3.8060 -6.6844 3.7556 51 1 2.8398 -2.5180 2.7530 52 1 1.2033 -3.2210 2.8608 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076110142.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:32 Heat of formation + Delta-G solvation = 18.969459 kcal Electronic energy + Delta-G solvation = -25517.994854 eV Core-core repulsion = 22095.449468 eV Total energy + Delta-G solvation = -3422.545386 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.06111 -38.94787 -37.26810 -34.11991 -33.21569 -31.51472 -31.19372 -30.31572 -29.50151 -27.12882 -26.65648 -25.41620 -23.62748 -22.88834 -21.86546 -21.47839 -20.79348 -20.01845 -19.79323 -17.18830 -16.44769 -16.20030 -15.88719 -15.49855 -15.33892 -15.22484 -14.84156 -14.39586 -14.01402 -13.88293 -13.71128 -13.62612 -13.52546 -13.16455 -12.93931 -12.59573 -12.28620 -12.24566 -11.91891 -11.77710 -11.56448 -11.52983 -11.27675 -11.26953 -11.12032 -10.98559 -10.91093 -10.73013 -10.56214 -10.47585 -10.39536 -9.57794 -9.29782 -9.19858 -9.08932 -9.01976 -8.53057 -8.31592 -8.03174 -5.97032 -3.98872 1.04127 1.12480 3.33929 3.39835 3.40106 3.43428 3.92920 4.07056 4.42324 4.48967 4.51828 4.56049 4.68187 4.71299 4.82433 4.88890 4.95349 5.14445 5.20019 5.23843 5.26565 5.33684 5.37963 5.38700 5.41922 5.52336 5.61596 5.66534 5.70698 5.73147 5.74875 5.82101 5.89827 5.94404 6.06823 6.09759 6.14570 6.16232 6.22371 6.28398 6.32819 6.36155 6.68981 6.73103 6.74871 6.80624 6.82522 7.15458 7.38549 7.42670 7.71793 7.87137 8.03726 8.47268 9.08355 9.64874 11.14402 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.031280 B = 0.001745 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.925981 B =16042.739503 C =16309.103022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.540 5.540 3 C 0.056 3.944 4 C -0.104 4.104 5 C 0.021 3.979 6 C -0.518 4.518 7 H 0.055 0.945 8 C 0.055 3.945 9 N -0.896 5.896 10 Si 0.892 3.108 11 H -0.281 1.281 12 H -0.274 1.274 13 H -0.287 1.287 14 C 0.066 3.934 15 C -0.105 4.105 16 H 0.076 0.924 17 C -0.110 4.110 18 C 0.041 3.959 19 N -0.523 5.523 20 C 0.088 3.912 21 C -0.074 4.074 22 C -0.113 4.113 23 C -0.121 4.121 24 C -0.123 4.123 25 C -0.122 4.122 26 C -0.100 4.100 27 C 0.047 3.953 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.020 0.980 31 H 0.068 0.932 32 H 0.027 0.973 33 H 0.046 0.954 34 H 0.055 0.945 35 H 0.015 0.985 36 H 0.013 0.987 37 H 0.260 0.740 38 H 0.076 0.924 39 H 0.029 0.971 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.043 0.957 44 H 0.081 0.919 45 H 0.043 0.957 46 H 0.118 0.882 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.122 0.878 51 H 0.080 0.920 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.601 -29.973 10.816 31.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.264 5.264 3 C -0.071 4.071 4 C -0.142 4.142 5 C -0.016 4.016 6 C -0.556 4.556 7 H 0.073 0.927 8 C -0.146 4.146 9 N -0.536 5.536 10 Si 0.720 3.280 11 H -0.207 1.207 12 H -0.199 1.199 13 H -0.213 1.213 14 C -0.063 4.063 15 C -0.124 4.124 16 H 0.094 0.906 17 C -0.148 4.148 18 C -0.086 4.086 19 N -0.246 5.246 20 C -0.040 4.040 21 C -0.075 4.075 22 C -0.131 4.131 23 C -0.139 4.139 24 C -0.141 4.141 25 C -0.140 4.140 26 C -0.118 4.118 27 C -0.081 4.081 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.039 0.961 31 H 0.087 0.913 32 H 0.045 0.955 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.034 0.966 36 H 0.031 0.969 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.048 0.952 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.061 0.939 44 H 0.099 0.901 45 H 0.061 0.939 46 H 0.136 0.864 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.140 0.860 51 H 0.098 0.902 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.854 -30.070 10.586 31.890 hybrid contribution -1.310 1.016 -0.318 1.688 sum -2.164 -29.054 10.269 30.891 Atomic orbital electron populations 1.22437 0.88174 1.00915 1.01104 1.62034 1.07487 1.15068 1.41793 1.22302 0.99504 0.86175 0.99076 1.21640 0.99985 0.98129 0.94437 1.19079 0.96242 0.89388 0.96935 1.21256 1.34685 0.97579 1.02088 0.92706 1.25034 0.95284 0.97518 0.96716 1.69970 1.38415 1.11291 1.33915 0.86600 0.78835 0.78608 0.83987 1.20666 1.19919 1.21276 1.22070 1.00316 0.92065 0.91848 1.22408 1.00108 0.94799 0.95112 0.90619 1.22631 1.00937 0.92927 0.98306 1.23130 1.00480 0.97680 0.87312 1.63628 1.53473 1.01295 1.06241 1.21248 0.94243 0.88503 1.00000 1.19739 0.97107 0.95523 0.95101 1.21072 1.00124 0.95282 0.96664 1.21120 0.96776 0.96464 0.99577 1.21151 0.97972 0.99997 0.95018 1.21158 0.99915 0.95480 0.97465 1.21023 0.95468 0.95763 0.99564 1.22856 0.98779 0.89670 0.96844 0.90736 0.92175 0.96118 0.91309 0.95452 0.93520 0.92648 0.96619 0.96878 0.93075 0.90581 0.95245 0.90370 0.90491 0.90452 0.93871 0.90067 0.93872 0.86438 0.86201 0.86283 0.86162 0.86047 0.90176 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.14 60.07 0.55 0.85 16 2 N -0.54 -7.96 4.68 -242.92 -1.14 -9.09 16 3 C 0.06 0.99 4.96 -3.83 -0.02 0.97 16 4 C -0.10 -2.19 5.08 -26.73 -0.14 -2.33 16 5 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 6 C -0.52 -14.92 9.11 -34.44 -0.31 -15.24 16 7 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 10 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 C 0.07 0.80 4.25 -3.82 -0.02 0.78 16 15 C -0.10 -1.07 2.90 -88.80 -0.26 -1.33 16 16 H 0.08 0.79 6.24 -51.93 -0.32 0.46 16 17 C -0.11 -1.16 6.44 -24.59 -0.16 -1.32 16 18 C 0.04 0.39 5.62 -2.30 -0.01 0.38 16 19 N -0.52 -4.99 5.15 -232.69 -1.20 -6.19 16 20 C 0.09 0.72 4.73 -4.98 -0.02 0.70 16 21 C -0.07 -0.64 5.09 -104.63 -0.53 -1.17 16 22 C -0.11 -0.92 8.93 -39.58 -0.35 -1.28 16 23 C -0.12 -0.92 10.05 -39.59 -0.40 -1.32 16 24 C -0.12 -0.91 10.05 -39.59 -0.40 -1.30 16 25 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 26 C -0.10 -0.82 9.70 -39.58 -0.38 -1.21 16 27 C 0.05 0.43 6.45 -2.84 -0.02 0.41 16 28 H 0.07 1.09 6.47 -51.93 -0.34 0.75 16 29 H 0.06 0.69 6.18 -51.93 -0.32 0.37 16 30 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 1.21 7.93 -51.93 -0.41 0.80 16 32 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 33 H 0.05 0.97 6.55 -51.93 -0.34 0.63 16 34 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 36 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 38 H 0.08 0.95 7.79 -51.93 -0.40 0.55 16 39 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.08 0.89 7.94 -51.93 -0.41 0.48 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.04 0.39 7.00 -51.93 -0.36 0.02 16 44 H 0.08 0.60 7.98 -51.92 -0.41 0.19 16 45 H 0.04 0.34 7.79 -51.93 -0.40 -0.06 16 46 H 0.12 0.85 7.50 -52.49 -0.39 0.46 16 47 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 48 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 49 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 50 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 51 H 0.08 0.76 7.82 -51.93 -0.41 0.36 16 52 H 0.05 0.44 7.56 -51.93 -0.39 0.05 16 LS Contribution 405.08 15.07 6.10 6.10 Total: -1.00 -30.75 405.08 -13.16 -43.91 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -9.54 Total: -3.33 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: -3.11 Total: -21.79 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: -1.60 Total: -41.82 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.75 -13.16 -43.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076110142.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.882 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds